6prk

X-ray Crystal Structure of Bacillus subtilis RicA in complex with RicF

Method: X-RAY DIFFRACTION
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1. Protein Identity and Related Structures Protein Identity & Related Structures

RicF

Bacillus subtilis (strain 168)

UniProt O34412

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 4 RicA × 2 (O31779) Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name YLBF_BACSU
Isoform —
PDB entities 1
Chains and sequence ranges Author chain A; PDBConstruct 1–121; UniProt 1–121

RicA

Bacillus subtilis (strain 168)

UniProt O31779

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 4 RicF × 2 (O34412) Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name YMCA_BACSU
Isoform —
PDB entities 2
Chains and sequence ranges Author chain B; PDBConstruct 3–124; UniProt 1–122

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

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2. Structure Basics 2. Structure Basics

Entry ID entry_id6prk
Deposition date deposition_date2019-07-10
Structure title titleX-ray Crystal Structure of Bacillus subtilis RicA in complex with RicF
Keywords keywordsRNA processing, biofilms, competence, sporulation, METAL BINDING PROTEIN; METAL BINDING PROTEIN
Experimental Method methodX-RAY DIFFRACTION
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3. Official assembly/model SAXS Official SAXS Profiles

This page reads only the latest assembly calculations. Every curve maps to an explicit PDB entry, official biological assembly and coordinate model.

6prk__assembly_1__model_1

Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

Download this curve (.dat)

6prk__assembly_1__model_1 | I(q)

10-2 10-1 106 107 q (1/Angstrom) I(q)
100 plotted points; both axes use logarithmic scales.

6prk__assembly_1__model_1 | P(r) · Pending

The new assembly/model P(r) has not been calculated yet This placeholder does not display legacy data r (Angstrom) P(r)
P(r) will be calculated and displayed separately for the same assembly/model.
Rg(Guinier)32.31 Å
Rg (electron density)31.35 Å
Total Rg32.16 Å
Atom count3810
Residues464
Excluded volume67368 ų
Maximum q0.500 Å⁻¹
Assembly Model Structure unit Oligomeric description Status CRYSOL Actions
1 1 6prk__assembly_1__model_1 tetrameric (4) Success 4.1.3-1-20251215 (887e7ef) View Download
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4. Crystallography and Experiment 4. Crystallography & Experiment

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5. Entities and Polymers Entities & Polymers (2)

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6. Fold Classification (SCOP + CATH) 1 domains

CATH v4.4 (1 domains)

Domain ID domain_id6prkB00
Class class1 — Mainly Alpha
Architecture architecture20 — Up-down Bundle
Topology topology1500 — YheA-like fold
Homologous superfamily homologous superfamily10 — YheA/YmcA-like
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7. Citations (1)