← Back to search
6qd7

EM structure of a EBOV-GP bound to 3T0331 neutralizing antibody

Method: ELECTRON MICROSCOPY
▼

1. Protein Identity and Related Structures Protein Identity & Related Structures

Envelope glycoprotein,Virion spike glycoprotein,EBOV-GP1

Ebola virus

UniProt Q05320

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Other combination Heteromer Protein 12 其他Polymer 3 Light chain × 3 Heavy chain × 3 ;alpha-D-mannopyranose-(1-6)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose ; × 3 alpha-D-mannopyranose × 3 2-acetamido-2-deoxy-beta-D-glucopyranose × 3 Consistent with protein count

Other States of the Same Protein in the Database

Monomer
2rlj

1 assemblies

Homodimer

None

Homotetramer

None

Other homooligomers
2ebo

1 assemblies

Heteromeric or nucleic-acid complex
3csy 3csy 5fhc 5hj3 5hj3 5jq3 5jq7 5jqb 5kel 5kem 5ken 6eay

41 assemblies; showing the first 12

View Construct and Data Evidence
UniProt name VGP_EBOZM
Isoform —
PDB entities 3, 4
Chains and sequence ranges Author chain A； PDBConstruct 4–283； UniProt 32–311 Author chain C； PDBConstruct 4–283； UniProt 32–311 Author chain E； PDBConstruct 4–283； UniProt 32–311 Author chain B； PDBConstruct 1–131； UniProt 502–632 Author chain D； PDBConstruct 1–131； UniProt 502–632 Author chain F； PDBConstruct 1–131； UniProt 502–632

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

▼

2. Structure Basics 2. Structure Basics

Entry ID entry_id6qd7
Deposition date deposition_date2019-01-01
Structure title titleEM structure of a EBOV-GP bound to 3T0331 neutralizing antibody
Keywords keywordsAntibody, immune response, viral infection, EBOV, VIRAL PROTEIN; VIRAL PROTEIN
Experimental Method methodELECTRON MICROSCOPY
▼

3. Official assembly/model SAXS Official SAXS Profiles

This page reads only the latest assembly calculations. Every curve maps to an explicit PDB entry, official biological assembly and coordinate model.

6qd7__assembly_1__model_1

Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

Download this curve (.dat)

6qd7__assembly_1__model_1 | I(q)

10-2 10-1 106 107 108 q (1/Angstrom) I(q)
100 plotted points; both axes use logarithmic scales.

6qd7__assembly_1__model_1 | P(r) · Pending

The new assembly/model P(r) has not been calculated yet This placeholder does not display legacy data r (Angstrom) P(r)
P(r) will be calculated and displayed separately for the same assembly/model.
Rg（Guinier）42.65 Å
Rg (electron density)42.12 Å
Total Rg42.41 Å
Atom count14436
Residues1842
Excluded volume255460 ų
Maximum q0.500 Å⁻¹
Assembly Model Structure unit Oligomeric description Status CRYSOL Actions
1 1 6qd7__assembly_1__model_1 dodecameric （12） Success 4.1.3-1-20251215 (887e7ef) View Download
▶

4. Crystallography and Experiment 4. Crystallography & Experiment

▶

5. Entities and Polymers Entities & Polymers (7)

▼

6. Fold Classification (SCOP + CATH) 9 domains

SCOP 2.08 (9 domains)

Domain ID domain_idd6qd7a_
Class classf — Membrane and cell surface proteins and peptides
Fold Fold foldf.64 — Filovirus surface glycoprotein-like
Superfamily Superfamily superfamilyf.64.1 — Filovirus surface glycoprotein-like
Family Family familyf.64.1.1 — Filovirus surface glycoproteins
Domain ID domain_idd6qd7c_
Class classf — Membrane and cell surface proteins and peptides
Fold Fold foldf.64 — Filovirus surface glycoprotein-like
Superfamily Superfamily superfamilyf.64.1 — Filovirus surface glycoprotein-like
Family Family familyf.64.1.1 — Filovirus surface glycoproteins
Domain ID domain_idd6qd7e_
Class classf — Membrane and cell surface proteins and peptides
Fold Fold foldf.64 — Filovirus surface glycoprotein-like
Superfamily Superfamily superfamilyf.64.1 — Filovirus surface glycoprotein-like
Family Family familyf.64.1.1 — Filovirus surface glycoproteins
Domain ID domain_idd6qd7h_
Class classb — All beta proteins
Fold Fold foldb.1 — Immunoglobulin-like beta-sandwich
Superfamily Superfamily superfamilyb.1.1 — Immunoglobulin
Family Family familyb.1.1.1 — V set domains (antibody variable domain-like)
Domain ID domain_idd6qd7l_
Class classb — All beta proteins
Fold Fold foldb.1 — Immunoglobulin-like beta-sandwich
Superfamily Superfamily superfamilyb.1.1 — Immunoglobulin
Family Family familyb.1.1.0 — automated matches
Domain ID domain_idd6qd7p_
Class classb — All beta proteins
Fold Fold foldb.1 — Immunoglobulin-like beta-sandwich
Superfamily Superfamily superfamilyb.1.1 — Immunoglobulin
Family Family familyb.1.1.0 — automated matches
Domain ID domain_idd6qd7u_
Class classb — All beta proteins
Fold Fold foldb.1 — Immunoglobulin-like beta-sandwich
Superfamily Superfamily superfamilyb.1.1 — Immunoglobulin
Family Family familyb.1.1.1 — V set domains (antibody variable domain-like)
Domain ID domain_idd6qd7x_
Class classb — All beta proteins
Fold Fold foldb.1 — Immunoglobulin-like beta-sandwich
Superfamily Superfamily superfamilyb.1.1 — Immunoglobulin
Family Family familyb.1.1.1 — V set domains (antibody variable domain-like)
Domain ID domain_idd6qd7z_
Class classb — All beta proteins
Fold Fold foldb.1 — Immunoglobulin-like beta-sandwich
Superfamily Superfamily superfamilyb.1.1 — Immunoglobulin
Family Family familyb.1.1.0 — automated matches
▶

7. Citations (1)