Green fluorescent protein
Aequorea victoria
State in the Current Structure
| Assembly | Oligomeric State | Construct | Mutations and Modifications | Ligands, Ions and Associated Components | Method and Experimental Conditions | Structure Quality |
|---|---|---|---|---|---|---|
| 1 | Protein monomer Monomer Protein × 1 PDB declaration: monomeric（1） Consistent with protein copy count | Chain A； UniProt 3–238 | Non-standard monomer：Yes (specific site not provided by mmCIF) | No other associated polymer | X-RAY DIFFRACTION X-ray crystallization conditions：VAPOR DIFFUSION, SITTING DROP；291 K；200 mM NH4F 20 % PEG 3350 | Resolution 1.65 Å R-free 0.219 |
Other States of the Same Protein in the Database
Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.
| Other PDB | Difference from Current Entry 7A8D | Assembly / Oligomeric State | Construct | Mutations and Modifications | Ligands, Ions and Non-polymers | Method and Experimental Conditions | Structure Quality |
|---|---|---|---|---|---|---|---|
| 28QL GFP bound to distal DARPin (AHIR dodecamer scaffold system) Deposited 2026-02-13 | Different construct Different mutation/modification Different oligomeric state Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer；Protein × 2 PDB declaration: dimeric |
Chain B
3–229（227 aa）
|
Not recorded | No recorded non-water small molecule |
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 2.72 Å |
| 5BT0 Switching GFP fluorescence using genetically encoded phenyl azide chemistry through two different non-native post-translational modifications routes at the same position. Deposited 2015-06-02 | Different construct Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
3–234（232 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) | SO4 SULFATE ION × 3 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 8.5；297 K；50 mM MMT, 2.5 M (NH4)2SO4
|
Resolution 2.03 Å R-free 0.204 |
| 5BT0 Switching GFP fluorescence using genetically encoded phenyl azide chemistry through two different non-native post-translational modifications routes at the same position. Deposited 2015-06-02 | Different construct Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 2 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain B
3–234（232 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) | SO4 SULFATE ION × 3 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 8.5；297 K；50 mM MMT, 2.5 M (NH4)2SO4
|
Resolution 2.03 Å R-free 0.204 |
| 5BTT Switching GFP fluorescence using genetically encoded phenyl azide chemistry through two different non-native post-translational modifications routes at the same position. Deposited 2015-06-03 | Different construct Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
3–231（229 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) | SO4 SULFATE ION × 5 GOL GLYCEROL × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 8.5；297 K；50 mM MMT, 2.5 M (NH4)2SO4
|
Resolution 2.14 Å R-free 0.207 |
| 5BTT Switching GFP fluorescence using genetically encoded phenyl azide chemistry through two different non-native post-translational modifications routes at the same position. Deposited 2015-06-03 | Different construct Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 2 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain B
3–231（229 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) | SO4 SULFATE ION × 6 GOL GLYCEROL × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 8.5；297 K；50 mM MMT, 2.5 M (NH4)2SO4
|
Resolution 2.14 Å R-free 0.207 |
| 5DPG sfGFP mutant - 133 p-cyano-L-phenylalanine Deposited 2015-09-12 | Different construct Different mutation/modification Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
1–238（238 aa）
|
Mutation：M1V, R2S, S30R, T65(CRO), Y66(CRO), G67(CRO), A72S, Q80R, D133(4CF), A206V Non-standard monomer：Yes (specific site not provided by mmCIF) | EDO 1,2-ETHANEDIOL × 10 NA SODIUM ION × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 6.5；298 K；22% PEG 3350, 2% Tacsimate pH 6, 0.1 M Bis-Tris pH 6.5
|
Resolution 1.85 Å R-free 0.192 |
| 5DPH sfGFP mutant - 149 p-cyano-L-phenylalanine Deposited 2015-09-12 | Different construct Different mutation/modification Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
1–238（238 aa）
|
Mutation：M1V, R2S, S30R, T65(CRO), Y66(CRO), G67(CRO), A72S, Q80R, A206V, N149(4CF) Non-standard monomer：Yes (specific site not provided by mmCIF) | CO2 CARBON DIOXIDE × 1 MG MAGNESIUM ION × 5 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 8.5；298 K；0.1 M Tris pH 8.5, 20% PEG 4000, 0.21 M MgCl2-6H2O
|
Resolution 1.42 Å R-free 0.208 |
| 5DPH sfGFP mutant - 149 p-cyano-L-phenylalanine Deposited 2015-09-12 | Different construct Different mutation/modification Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 2 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain B
1–238（238 aa）
|
Mutation：M1V, R2S, S30R, T65(CRO), Y66(CRO), G67(CRO), A72S, Q80R, A206V, N149(4CF) Non-standard monomer：Yes (specific site not provided by mmCIF) | CO2 CARBON DIOXIDE × 1 MG MAGNESIUM ION × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 8.5；298 K；0.1 M Tris pH 8.5, 20% PEG 4000, 0.21 M MgCl2-6H2O
|
Resolution 1.42 Å R-free 0.208 |
| 5DPI sfGFP double mutant - 133/149 p-cyano-L-phenylalanine Deposited 2015-09-12 | Different construct Different mutation/modification Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
1–238（238 aa）
|
Mutation：M1V, R2S, S30R, T65(CRO), Y66(CRO), G67(CRO), A72S, Q80R, A206V, D133(4CF), N149(4CF) Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 7.5；298 K；0.2 M potassium sodium formate, 30% PEG 3350
|
Resolution 2.54 Å R-free 0.243 |
| 5DPI sfGFP double mutant - 133/149 p-cyano-L-phenylalanine Deposited 2015-09-12 | Different construct Different mutation/modification Different experimental conditions Different structure-quality metrics | Assembly 2 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain B
1–238（238 aa）
|
Mutation：M1V, R2S, S30R, T65(CRO), Y66(CRO), G67(CRO), A72S, Q80R, A206V, D133(4CF), N149(4CF) Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 7.5；298 K；0.2 M potassium sodium formate, 30% PEG 3350
|
Resolution 2.54 Å R-free 0.243 |
| 5DPI sfGFP double mutant - 133/149 p-cyano-L-phenylalanine Deposited 2015-09-12 | Different construct Different mutation/modification Different experimental conditions Different structure-quality metrics | Assembly 3 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain C
1–238（238 aa）
|
Mutation：M1V, R2S, S30R, T65(CRO), Y66(CRO), G67(CRO), A72S, Q80R, A206V, D133(4CF), N149(4CF) Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 7.5；298 K；0.2 M potassium sodium formate, 30% PEG 3350
|
Resolution 2.54 Å R-free 0.243 |
| 5DPI sfGFP double mutant - 133/149 p-cyano-L-phenylalanine Deposited 2015-09-12 | Different construct Different mutation/modification Different experimental conditions Different structure-quality metrics | Assembly 4 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain D
1–238（238 aa）
|
Mutation：M1V, R2S, S30R, T65(CRO), Y66(CRO), G67(CRO), A72S, Q80R, A206V, D133(4CF), N149(4CF) Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 7.5；298 K；0.2 M potassium sodium formate, 30% PEG 3350
|
Resolution 2.54 Å R-free 0.243 |
| 5DPI sfGFP double mutant - 133/149 p-cyano-L-phenylalanine Deposited 2015-09-12 | Different construct Different mutation/modification Different experimental conditions Different structure-quality metrics | Assembly 5 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain E
1–238（238 aa）
|
Mutation：M1V, R2S, S30R, T65(CRO), Y66(CRO), G67(CRO), A72S, Q80R, A206V, D133(4CF), N149(4CF) Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 7.5；298 K；0.2 M potassium sodium formate, 30% PEG 3350
|
Resolution 2.54 Å R-free 0.243 |
| 5DPI sfGFP double mutant - 133/149 p-cyano-L-phenylalanine Deposited 2015-09-12 | Different construct Different mutation/modification Different experimental conditions Different structure-quality metrics | Assembly 6 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain F
1–238（238 aa）
|
Mutation：M1V, R2S, S30R, T65(CRO), Y66(CRO), G67(CRO), A72S, Q80R, A206V, D133(4CF), N149(4CF) Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 7.5；298 K；0.2 M potassium sodium formate, 30% PEG 3350
|
Resolution 2.54 Å R-free 0.243 |
| 5DPJ sfGFP double mutant - 133/149 p-ethynyl-L-phenylalanine Deposited 2015-09-12 | Different construct Different mutation/modification Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
1–238（238 aa）
|
Mutation：M1V, R2S, S30R, T65(CRO), Y66(CRO), G67(CRO), A72S, Q80R, D133(5DW), N149(5DW), A206V Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 7；298 K；22% PEG 3350 and 0.20 M sodium citrate tribasic, pH 7
|
Resolution 2.50 Å R-free 0.244 |
| 5DPJ sfGFP double mutant - 133/149 p-ethynyl-L-phenylalanine Deposited 2015-09-12 | Different construct Different mutation/modification Different experimental conditions Different structure-quality metrics | Assembly 2 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain B
1–238（238 aa）
|
Mutation：M1V, R2S, S30R, T65(CRO), Y66(CRO), G67(CRO), A72S, Q80R, D133(5DW), N149(5DW), A206V Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 7；298 K；22% PEG 3350 and 0.20 M sodium citrate tribasic, pH 7
|
Resolution 2.50 Å R-free 0.244 |
| 5DPJ sfGFP double mutant - 133/149 p-ethynyl-L-phenylalanine Deposited 2015-09-12 | Different construct Different mutation/modification Different experimental conditions Different structure-quality metrics | Assembly 3 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain C
1–238（238 aa）
|
Mutation：M1V, R2S, S30R, T65(CRO), Y66(CRO), G67(CRO), A72S, Q80R, D133(5DW), N149(5DW), A206V Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 7；298 K；22% PEG 3350 and 0.20 M sodium citrate tribasic, pH 7
|
Resolution 2.50 Å R-free 0.244 |
| 5DPJ sfGFP double mutant - 133/149 p-ethynyl-L-phenylalanine Deposited 2015-09-12 | Different construct Different mutation/modification Different experimental conditions Different structure-quality metrics | Assembly 4 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain D
1–238（238 aa）
|
Mutation：M1V, R2S, S30R, T65(CRO), Y66(CRO), G67(CRO), A72S, Q80R, D133(5DW), N149(5DW), A206V Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 7；298 K；22% PEG 3350 and 0.20 M sodium citrate tribasic, pH 7
|
Resolution 2.50 Å R-free 0.244 |
| 5DY6 Enhanced superfolder GFP with DBCO at 148 Deposited 2015-09-24 | Different construct Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
5–232（228 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) | SO4 SULFATE ION × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 6；294 K；0.1 M PCTP Buffer, 15% PEG 1500
|
Resolution 2.66 Å R-free 0.290 |
| 5DY6 Enhanced superfolder GFP with DBCO at 148 Deposited 2015-09-24 | Different construct Different experimental conditions Different structure-quality metrics | Assembly 2 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain B
5–232（228 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 6；294 K；0.1 M PCTP Buffer, 15% PEG 1500
|
Resolution 2.66 Å R-free 0.290 |
| 5EHU sfGFP mutant with unnatural amino acid 4-azidoethoxy-L-phenylalanine incorporated at the 149 site Deposited 2015-10-28 | Different construct Different mutation/modification Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
2–238（237 aa）
|
Mutation：S30R, A72S, Q80R, N149(4LZ), A206V Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 7.5；298 K；A 40 mg/mL solution of sfGFP-149-AePhe in a 20 mM Hepes buffer pH 7.5 was combined with a precipitation solution (20% PEG 8000, 100 mM Hepes pH 7.5) in a 1:1 ratio to form crystals in a sitting drop well at room temperature
|
Resolution 1.45 Å R-free 0.208 |
| 5EHU sfGFP mutant with unnatural amino acid 4-azidoethoxy-L-phenylalanine incorporated at the 149 site Deposited 2015-10-28 | Different construct Different mutation/modification Different experimental conditions Different structure-quality metrics | Assembly 2 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain B
2–238（237 aa）
|
Mutation：S30R, A72S, Q80R, N149(4LZ), A206V Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 7.5；298 K；A 40 mg/mL solution of sfGFP-149-AePhe in a 20 mM Hepes buffer pH 7.5 was combined with a precipitation solution (20% PEG 8000, 100 mM Hepes pH 7.5) in a 1:1 ratio to form crystals in a sitting drop well at room temperature
|
Resolution 1.45 Å R-free 0.208 |
| 5JZK The Structure of Ultra Stable Green Fluorescent Protein Deposited 2016-05-17 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein homooligomer Homooligomer；Protein × 2 PDB declaration: dimeric |
Chain A
3–238（236 aa）
Fragment：UNP residues 3-238
Chain B
3–238（236 aa）
Fragment：UNP residues 3-238
|
Non-standard monomer：Yes (specific site not provided by mmCIF) Non-standard monomer：Yes (specific site not provided by mmCIF) | NO3 NITRATE ION × 4 EDO 1,2-ETHANEDIOL × 2 CL CHLORIDE ION × 1 GOL GLYCEROL × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；281 K；20 % w/v PEG 3350, 0.1 M Bis-Tris propane pH 6.5, 0.2 M Sodium nitrate
|
Resolution 1.90 Å R-free 0.176 |
| 5JZL The Structure of Monomeric Ultra Stable Green Fluorescent Protein Deposited 2016-05-17 | Different construct Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
3–238（236 aa）
Fragment：UNP residues 3-238
|
Non-standard monomer：Yes (specific site not provided by mmCIF) | CL CHLORIDE ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；281 K；22% w/v PEG 8000, 0.2 M sodium chloride, 0.1 M phosphate-citrate buffer pH 3.7, 4% v/v acetone
|
Resolution 1.80 Å R-free 0.217 |
| 5JZL The Structure of Monomeric Ultra Stable Green Fluorescent Protein Deposited 2016-05-17 | Different construct Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 2 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain B
3–238（236 aa）
Fragment：UNP residues 3-238
|
Non-standard monomer：Yes (specific site not provided by mmCIF) | CL CHLORIDE ION × 1 NA SODIUM ION × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；281 K；22% w/v PEG 8000, 0.2 M sodium chloride, 0.1 M phosphate-citrate buffer pH 3.7, 4% v/v acetone
|
Resolution 1.80 Å R-free 0.217 |
| 5MFC Designed armadillo repeat protein YIIIM5AII in complex with (KR)4-GFP Deposited 2016-11-18 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer；Protein × 2 PDB declaration: dimeric |
Chain B
3–238（236 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) | ACT ACETATE ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 4.6；277 K；8% w/v PEG 4000, 0.1M Na acetate trihydrate pH 4.6,
|
Resolution 2.40 Å R-free 0.240 |
| 5MFC Designed armadillo repeat protein YIIIM5AII in complex with (KR)4-GFP Deposited 2016-11-18 | Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 2 Protein heterocomplex Heteromer；Protein × 2 PDB declaration: dimeric |
Chain D
3–238（236 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 4.6；277 K；8% w/v PEG 4000, 0.1M Na acetate trihydrate pH 4.6,
|
Resolution 2.40 Å R-free 0.240 |
| 5NHN Super-Folder Green Fluorescent Protein Artificiall dimer linked via 148 position Deposited 2017-03-22 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein homooligomer Homooligomer；Protein × 2 PDB declaration: dimeric |
Chain A
3–231（229 aa）
Chain B
3–231（229 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) Non-standard monomer：Yes (specific site not provided by mmCIF) | DB5 [(4~{S})-4,5,6,7,8,9-hexahydro-1~{H}-cycloocta[d][1,2,3]triazol-4-yl] hydrogen carbonate × 1 GOL GLYCEROL × 1 EDO 1,2-ETHANEDIOL × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；300 K；Condition C6 of the PACT Premier screen:
0.1 M PCTP Buffer, pH 9.0, 25% PEG 1500
|
Resolution 1.96 Å R-free 0.209 |
| 5NI3 sfGFP 204-204 mutant dimer Deposited 2017-03-23 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein homooligomer Homooligomer；Protein × 2 PDB declaration: dimeric |
Chain A
3–229（227 aa）
Chain D
3–233（231 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) Non-standard monomer：Yes (specific site not provided by mmCIF) | NA SODIUM ION × 6 DB5 [(4~{S})-4,5,6,7,8,9-hexahydro-1~{H}-cycloocta[d][1,2,3]triazol-4-yl] hydrogen carbonate × 1 GOL GLYCEROL × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；291 K；PACT condition C6: 0.1M PCTP Buffer, pH 9.0, 25% PEG 1500
|
Resolution 1.28 Å R-free 0.191 |
| 5NI3 sfGFP 204-204 mutant dimer Deposited 2017-03-23 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 2 Protein homooligomer Homooligomer；Protein × 2 PDB declaration: dimeric |
Chain B
3–233（231 aa）
Chain C
3–233（231 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) Non-standard monomer：Yes (specific site not provided by mmCIF) | NA SODIUM ION × 4 DB5 [(4~{S})-4,5,6,7,8,9-hexahydro-1~{H}-cycloocta[d][1,2,3]triazol-4-yl] hydrogen carbonate × 1 GOL GLYCEROL × 4 CL CHLORIDE ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；291 K；PACT condition C6: 0.1M PCTP Buffer, pH 9.0, 25% PEG 1500
|
Resolution 1.28 Å R-free 0.191 |
| 5YR2 Structure of cpGFP66BPA Deposited 2017-11-08 | Different construct Different mutation/modification Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
146–235（90 aa）
Chain A
3–144（142 aa）
|
Mutation：Y163(BPA) Non-standard monomer：Yes (specific site not provided by mmCIF) Mutation：Y163(BPA) Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 5.5；289.15 K；PEG 3350 25%, 0.2M MgCl2,0.1M Bis-Tris pH 5.5
|
Resolution 1.80 Å R-free 0.215 |
| 5YR2 Structure of cpGFP66BPA Deposited 2017-11-08 | Different construct Different mutation/modification Different experimental conditions Different structure-quality metrics | Assembly 2 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain B
146–235（90 aa）
Chain B
3–144（142 aa）
|
Mutation：Y163(BPA) Non-standard monomer：Yes (specific site not provided by mmCIF) Mutation：Y163(BPA) Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 5.5；289.15 K；PEG 3350 25%, 0.2M MgCl2,0.1M Bis-Tris pH 5.5
|
Resolution 1.80 Å R-free 0.215 |
| 5Z6Y Structure of sfYFP48S95C66BPA Deposited 2018-01-25 | Different construct Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
3–230（228 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 4；289 K；0.1M sodium malonate pH 4.0, 12% PEG 3350
|
Resolution 1.87 Å R-free 0.236 |
| 6B9C Superfolder Green Fluorescent Protein with 4-nitro-L-phenylalanine at the chromophore (position 66) Deposited 2017-10-10 | Different mutation/modification Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
3–238（236 aa）
|
Mutation：S30R, A72S, Q80R, A206V Non-standard monomer：Yes (specific site not provided by mmCIF) | CO2 CARBON DIOXIDE × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 7；298 K；1.4 M DL-Malic acid
|
Resolution 1.70 Å R-free 0.195 |
| 6B9C Superfolder Green Fluorescent Protein with 4-nitro-L-phenylalanine at the chromophore (position 66) Deposited 2017-10-10 | Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 2 Protein homooligomer Homooligomer；Protein × 2 PDB declaration: dimeric |
Chain A
3–238（236 aa）
|
Mutation：S30R, A72S, Q80R, A206V Non-standard monomer：Yes (specific site not provided by mmCIF) | CO2 CARBON DIOXIDE × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 7；298 K；1.4 M DL-Malic acid
|
Resolution 1.70 Å R-free 0.195 |
| 6H01 Crystal structure of a domain-swapped dark-state sfGFP containing the unnatural amino acid ortho-nitrobenzyl-tyrosine (ONBY) at residue 66 Deposited 2018-07-06 | Different construct Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein homooligomer Homooligomer；Protein × 2 PDB declaration: dimeric |
Chain A
3–238（236 aa）
Chain C
3–238（236 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 7.5；291 K；1.1 M tri-Na-citrate
0.1 M Na-HEPES
|
Resolution 2.78 Å R-free 0.239 |
| 6H01 Crystal structure of a domain-swapped dark-state sfGFP containing the unnatural amino acid ortho-nitrobenzyl-tyrosine (ONBY) at residue 66 Deposited 2018-07-06 | Different construct Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 2 Protein homooligomer Homooligomer；Protein × 2 PDB declaration: dimeric |
Chain B
3–238（236 aa）
Chain D
3–238（236 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 7.5；291 K；1.1 M tri-Na-citrate
0.1 M Na-HEPES
|
Resolution 2.78 Å R-free 0.239 |
| 6HUT GFP8 - a stabilized variant of cycle-3 GFP Deposited 2018-10-09 | Different construct Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
1–245（245 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 7.5；296 K；200 mM HEPES, 10% v/v isopropanol, 200 mM NaCl
|
Resolution 1.29 Å R-free 0.203 |
| 6KRG Crystal structure of sfGFP Y182TMSiPhe Deposited 2019-08-21 | Different construct Different mutation/modification Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
1–236（236 aa）
|
Mutation：Y182T Non-standard monomer：Yes (specific site not provided by mmCIF) | GOL GLYCEROL × 2 CL CHLORIDE ION × 3 NA SODIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
EVAPORATION；289 K；PEG 6000, SODIUM CHLORIDE
|
Resolution 1.40 Å R-free 0.173 |
| 6OA8 Superfolder Green Fluorescent Protein with 4-cyano-L-phenylalanine at the chromophore (position 66) Deposited 2019-03-15 | Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
3–238（236 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) | EDO 1,2-ETHANEDIOL × 3 SO4 SULFATE ION × 8 NA SODIUM ION × 4 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 8.5；295 K；0.1 M Tris-HCl, 2.0 M ammonium sulfate, pH 8.5
|
Resolution 1.37 Å R-free 0.189 |
| 6UN5 Crystal structure of green fluorescent protein (GFP); S65T, Y66(2,3,5-F3Y); ih circular permutant (50-51) Deposited 2019-10-10 | Different construct Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Insufficient information Homooligomer；Protein × 2 PDB declaration: dimeric |
Chain A
51–237（187 aa）
Chain B
51–237（187 aa）
|
Mutation：;A72S, Q80R, T105K, E111V, I128T, K166T, I167V, S205T, A206V, S232R, Y241I, C250S,A72S, Q80R, T105K, E111V, I128T, K166T, I167V, S205T, A206V ; Non-standard monomer：Yes (specific site not provided by mmCIF) Mutation：;A72S, Q80R, T105K, E111V, I128T, K166T, I167V, S205T, A206V, S232R, Y241I, C250S,A72S, Q80R, T105K, E111V, I128T, K166T, I167V, S205T, A206V ; Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；293 K；0.15 M ammonium acetate, 31% PEG 3350
|
Resolution 1.36 Å R-free 0.205 |
| 6UN6 Crystal structure of green fluorescent protein (GFP); S65T, Y66(3-NO2Y); ih circular permutant (50-51) Deposited 2019-10-10 | Different construct Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Insufficient information Homooligomer；Protein × 2 PDB declaration: dimeric |
Chain A
51–237（187 aa）
Chain B
51–237（187 aa）
|
Mutation：A72S, Q80R, T105K, E111V, I128T, K166T, I167V, S205T, A206V, S232R, Y241I, C250S Non-standard monomer：Yes (specific site not provided by mmCIF) Mutation：A72S, Q80R, T105K, E111V, I128T, K166T, I167V, S205T, A206V, S232R, Y241I, C250S Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；293 K；0.15 M ammonium acetate, 34% PEG 3350
|
Resolution 1.50 Å R-free 0.181 |
| 6UN7 Crystal structure of green fluorescent protein (GFP); S65T, Y66(3-OMeY); ih circular permutant (50-51) Deposited 2019-10-10 | Different construct Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Insufficient information Homooligomer；Protein × 2 PDB declaration: dimeric |
Chain A
51–237（187 aa）
Chain B
51–237（187 aa）
|
Mutation：A72S, Q80R, T105K, E111V, I128T, K166T, I167V, S205T, A206V, S232R, Y241I, C250S Non-standard monomer：Yes (specific site not provided by mmCIF) Mutation：A72S, Q80R, T105K, E111V, I128T, K166T, I167V, S205T, A206V, S232R, Y241I, C250S Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；293 K；0.15 M ammonium acetate, 34% PEG 3350
|
Resolution 1.50 Å R-free 0.191 |
| 6WV3 Human VKOR with warfarin Deposited 2020-05-05 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Insufficient information Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
1–144（144 aa）
Fragment：GPF (UNP residues 1-144) + VKOR + GFP (UNP residues 146-231)
Chain A
146–231（86 aa）
Fragment：GPF (UNP residues 1-144) + VKOR + GFP (UNP residues 146-231)
|
Non-standard monomer：Yes (specific site not provided by mmCIF) Non-standard monomer：Yes (specific site not provided by mmCIF) | OLC (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate × 3 SWF S-WARFARIN × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
LIPIDIC CUBIC PHASE；pH 6.5；295 K；37% PEG400, 0.1 M MES, pH 6.5
|
Resolution 2.20 Å R-free 0.223 |
| 6WV4 Human VKOR C43S with warfarin Deposited 2020-05-05 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Insufficient information Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
1–144（144 aa）
Fragment：GPF (UNP residues 1-144) + VKOR + GFP (UNP residues 146-231)
Chain A
146–231（86 aa）
Fragment：GPF (UNP residues 1-144) + VKOR + GFP (UNP residues 146-231)
|
Mutation：C43S Non-standard monomer：Yes (specific site not provided by mmCIF) Mutation：C43S Non-standard monomer：Yes (specific site not provided by mmCIF) | SWF S-WARFARIN × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
LIPIDIC CUBIC PHASE；pH 6.5；295 K；25-33% PEG400, 185-220 mM potassium formate, 0.1 M MES, pH 6.5
|
Resolution 3.01 Å R-free 0.292 |
| 6WV5 Human VKOR C43S mutant with vitamin K1 epoxide Deposited 2020-05-05 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Insufficient information Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
1–144（144 aa）
Fragment：GPF (UNP residues 1-144) + VKOR + GFP (UNP residues 146-231)
Chain A
146–231（86 aa）
Fragment：GPF (UNP residues 1-144) + VKOR + GFP (UNP residues 146-231)
|
Mutation：C43S Non-standard monomer：Yes (specific site not provided by mmCIF) Mutation：C43S Non-standard monomer：Yes (specific site not provided by mmCIF) | UAV (2R,3R)-2-hydroxy-3-methyl-2-[(2E,7S)-3,7,11,15-tetramethylhexadec-2-en-1-yl]-2,3-dihydronaphthalene-1,4-dione × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
LIPIDIC CUBIC PHASE；pH 6.5；295 K；25% PEG400, 0.1 M ammonium citrate dibasic, 0.1 M MES, pH 6.5
|
Resolution 2.80 Å R-free 0.270 |
| 6WV6 Human VKOR with phenindione Deposited 2020-05-05 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Insufficient information Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
1–144（144 aa）
Fragment：GPF (UNP residues 1-144) + VKOR + GFP (UNP residues 146-231)
Chain A
146–231（86 aa）
Fragment：GPF (UNP residues 1-144) + VKOR + GFP (UNP residues 146-231)
|
Non-standard monomer：Yes (specific site not provided by mmCIF) Non-standard monomer：Yes (specific site not provided by mmCIF) | OLC (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate × 2 UAS Phenindione × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
LIPIDIC CUBIC PHASE；pH 6.5；295 K；34% PEG400, 80 mM lithium sulfate, 0.1 M MES, pH 6.5
|
Resolution 2.70 Å R-free 0.268 |
| 6WV7 Human VKOR with Chlorophacinone Deposited 2020-05-05 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Insufficient information Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
1–144（144 aa）
Fragment：GPF (UNP residues 1-144) + VKOR + GFP (UNP residues 146-231)
Chain A
146–231（86 aa）
Fragment：GPF (UNP residues 1-144) + VKOR + GFP (UNP residues 146-231)
|
Non-standard monomer：Yes (specific site not provided by mmCIF) Non-standard monomer：Yes (specific site not provided by mmCIF) | UAJ Chlorophacinone × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
LIPIDIC CUBIC PHASE；pH 6.5；295 K；33% PEG400, 5% DMSO, 0.1 M sodium acetate, 0.1 M MES, pH 6.5
|
Resolution 2.48 Å R-free 0.245 |
| 6WV7 Human VKOR with Chlorophacinone Deposited 2020-05-05 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 2 Insufficient information Monomer；Protein × 1 PDB declaration: monomeric |
Chain B
1–144（144 aa）
Fragment：GPF (UNP residues 1-144) + VKOR + GFP (UNP residues 146-231)
Chain B
146–231（86 aa）
Fragment：GPF (UNP residues 1-144) + VKOR + GFP (UNP residues 146-231)
|
Non-standard monomer：Yes (specific site not provided by mmCIF) Non-standard monomer：Yes (specific site not provided by mmCIF) | UAJ Chlorophacinone × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
LIPIDIC CUBIC PHASE；pH 6.5；295 K；33% PEG400, 5% DMSO, 0.1 M sodium acetate, 0.1 M MES, pH 6.5
|
Resolution 2.48 Å R-free 0.245 |
| 6WV8 Takifugu rubripes VKOR-like C138S mutant with vitamin K1 Deposited 2020-05-05 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Insufficient information Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
146–238（93 aa）
|
Mutation：C138S Non-standard monomer：Yes (specific site not provided by mmCIF) | PQN PHYLLOQUINONE × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
LIPIDIC CUBIC PHASE；pH 6；295 K；25% PEG 400, 300 mM ammonium fluoride, 0.1 M MES pH 6.0
|
Resolution 3.01 Å R-free 0.293 |
| 6WVB Takifugu rubripes VKOR-like with warfarin Deposited 2020-05-05 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Insufficient information Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
146–238（93 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) | SWF S-WARFARIN × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
LIPIDIC CUBIC PHASE；pH 5.5；295 K；23% PEG400, 0.1 M Sodium nitrate, 0.1 M MES pH 5.5
|
Resolution 2.87 Å R-free 0.286 |
| 6WVH Human VKOR with Brodifacoum Deposited 2020-05-06 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Insufficient information Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
1–144（144 aa）
Fragment：GPF (UNP residues 1-144) + VKOR + GFP (UNP residues 146-231)
Chain A
146–231（86 aa）
Fragment：GPF (UNP residues 1-144) + VKOR + GFP (UNP residues 146-231)
|
Non-standard monomer：Yes (specific site not provided by mmCIF) Non-standard monomer：Yes (specific site not provided by mmCIF) | UA7 Brodifacoum × 1 OLC (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
LIPIDIC CUBIC PHASE；pH 6.5；295 K；32% PEG400, 0.1 M ammonium acetate, 1% 1,2,3-heptanetriol, 0.1 M MES, pH 6.5
|
Resolution 1.99 Å R-free 0.215 |
| 6WVH Human VKOR with Brodifacoum Deposited 2020-05-06 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 2 Insufficient information Monomer；Protein × 1 PDB declaration: monomeric |
Chain B
1–144（144 aa）
Fragment：GPF (UNP residues 1-144) + VKOR + GFP (UNP residues 146-231)
Chain B
146–231（86 aa）
Fragment：GPF (UNP residues 1-144) + VKOR + GFP (UNP residues 146-231)
|
Non-standard monomer：Yes (specific site not provided by mmCIF) Non-standard monomer：Yes (specific site not provided by mmCIF) | UA7 Brodifacoum × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
LIPIDIC CUBIC PHASE；pH 6.5；295 K；32% PEG400, 0.1 M ammonium acetate, 1% 1,2,3-heptanetriol, 0.1 M MES, pH 6.5
|
Resolution 1.99 Å R-free 0.215 |
| 7A7M rsGreen0.7b in the green-on state Deposited 2020-08-30 | Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
3–238（236 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；293 K；150 mM KBr
30 % PEG 2000 mme
|
Resolution 1.60 Å R-free 0.198 |
| 7A7N rsGreen0.7b in the green-off state Deposited 2020-08-30 | Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
3–238（236 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；293 K；100 mM MMT pH 5.0
25 % PEG 1500
|
Resolution 1.20 Å R-free 0.170 |
| 7A7O rsGreen0.7-K206A in the green-on state Deposited 2020-08-30 | Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
3–238（236 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；293 K；200 mM Ammonium acetate
100 mM Bis-tris pH 5.5
25 % PEG 3350
|
Resolution 1.80 Å R-free 0.241 |
| 7A7P rsGreen0.7-K206A partially in the green-off state Deposited 2020-08-30 | Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
3–238（236 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) | NO3 NITRATE ION × 1 EDO 1,2-ETHANEDIOL × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；293 K；22 % PEG 4000
140 mM Mg(NO3)2
|
Resolution 1.48 Å R-free 0.197 |
| 7A7Q rsGreenF-K206A in the green-on state Deposited 2020-08-30 | Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
3–238（236 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) | PEG DI(HYDROXYETHYL)ETHER × 1 GOL GLYCEROL × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；293 K；200 mM NaCl
100 mM MES pH 6.0
20 % PEG 6000
|
Resolution 2.00 Å R-free 0.218 |
| 7A7R rsGreenF-K206A in the green-off state Deposited 2020-08-30 | Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
3–238（236 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) | PEG DI(HYDROXYETHYL)ETHER × 1 GOL GLYCEROL × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；293 K；200 mM NaCl
100 mM MES pH 6.0
20 % PEG 6000
|
Resolution 2.35 Å R-free 0.243 |
| 7A7S rsGreenF in the green-on state Deposited 2020-08-30 | Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
3–238（236 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；293 K；100 mM MIB pH 4.0
25 % PEG 1500
|
Resolution 1.73 Å R-free 0.235 |
| 7A7T rsGreenF partially in the green-off state Deposited 2020-08-30 | Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
3–238（236 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；293 K；100 mM MIB pH 4.0
25 % PEG 1500
|
Resolution 1.58 Å R-free 0.197 |
| 7A7U rsGreen1 in the green-on state Deposited 2020-08-30 | Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
3–238（236 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；293 K；2.0 M (NH4)2SO4
200 mM NaCl
100 mM Na-cacodylate pH 6.5
|
Resolution 2.15 Å R-free 0.201 |
| 7A7V rsGreen1-K206A partially in the green-off state Deposited 2020-08-30 | Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
3–238（236 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) | GOL GLYCEROL × 1 PEG DI(HYDROXYETHYL)ETHER × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；293 K；100 mM Bis-tris pH 5.5
200 mM (NH4)2SO4
16 % PEG 8000
|
Resolution 2.00 Å R-free 0.194 |
| 7A7W rsGreen0.7-F145M partially in the green-on state Deposited 2020-08-30 | Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
3–238（236 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；293 K；200 mM NH4HCO2
20 % PEG 4000
|
Resolution 1.30 Å R-free 0.165 |
| 7A7X rsGreen0.7-F145M in the green-off state Deposited 2020-08-30 | Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
3–238（236 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；293 K；100 mM MMT pH 8.0
25 % PEG 1500
|
Resolution 1.85 Å R-free 0.207 |
| 7A7Y rsGreen0.7-F145Q in the green-on state Deposited 2020-08-30 | Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
3–238（236 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) | NO3 NITRATE ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 6.5；293 K；200 mM KNO3
20 % PEG 3350
|
Resolution 0.97 Å R-free 0.142 |
| 7A7Z rsGreen0.7-K206A-E222G in the green-on state Deposited 2020-08-30 | Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
3–238（236 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；293 K；200 mM (Li)2SO4
100 mM Tris pH 8.5
40 % PEG 400
|
Resolution 1.10 Å R-free 0.142 |
| 7A80 rsGreen0.7-K206A-E222V in the green-on state Deposited 2020-08-30 | Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
3–238（236 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) | NO3 NITRATE ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；291 K；26 % PEG 4000
500 mM Mg(NO3)
50 mM HEPES pH 7.5
|
Resolution 2.05 Å R-free 0.234 |
| 7A80 rsGreen0.7-K206A-E222V in the green-on state Deposited 2020-08-30 | Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 2 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain B
3–238（236 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) | NO3 NITRATE ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；291 K；26 % PEG 4000
500 mM Mg(NO3)
50 mM HEPES pH 7.5
|
Resolution 2.05 Å R-free 0.234 |
| 7A80 rsGreen0.7-K206A-E222V in the green-on state Deposited 2020-08-30 | Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 3 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain C
3–238（236 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) | NO3 NITRATE ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；291 K；26 % PEG 4000
500 mM Mg(NO3)
50 mM HEPES pH 7.5
|
Resolution 2.05 Å R-free 0.234 |
| 7A80 rsGreen0.7-K206A-E222V in the green-on state Deposited 2020-08-30 | Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 4 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain D
3–238（236 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) | NO3 NITRATE ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；291 K；26 % PEG 4000
500 mM Mg(NO3)
50 mM HEPES pH 7.5
|
Resolution 2.05 Å R-free 0.234 |
| 7A81 rsGreen0.7-K206A-F145A partially in the green-on state Deposited 2020-08-30 | Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
3–238（236 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；293 K；200 mM NaCl
100 mM MES pH 6.0
20 % PEG 6000
4% 2,2,2-trifluoroethanol
|
Resolution 1.70 Å R-free 0.248 |
| 7A82 rsGreen0.7-K206A-F145A partially in the green-off state Deposited 2020-08-30 | Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
3–238（236 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；293 K；200 mM NaCl
100 mM MES pH 6.0
20 % PEG 6000
200 mM NDSB-211
|
Resolution 1.90 Å R-free 0.250 |
| 7A83 rsGreen0.7-K206A-F145H in the green-on-state Deposited 2020-08-30 | Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
3–238（236 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) | PGE TRIETHYLENE GLYCOL × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；293 K；125 mM MES pH 6.0
9 % PEG 4000
|
Resolution 1.73 Å R-free 0.192 |
| 7A84 rsGreen0.7-K206A-F145H partially in the green-off state Deposited 2020-08-30 | Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
3–238（236 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；293 K；100 mM MES pH 6.0
14 % PEG 400
300 mM NGSB-195
|
Resolution 2.10 Å R-free 0.269 |
| 7A85 rsGreen0.7-K206A-F145L in the green-on state Deposited 2020-08-30 | Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
3–238（236 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) | PGE TRIETHYLENE GLYCOL × 1 PEG DI(HYDROXYETHYL)ETHER × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；293 K；100 mM MES pH 6.5
12 % PEG 20 000
10 mM NaBr
|
Resolution 1.52 Å R-free 0.237 |
| 7A86 rsGreen0.7-K206A-F145L partially in the green-off state Deposited 2020-08-30 | Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
3–238（236 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；293 K；100 mM MES pH 6.5
12 % PEG 20 000
4 % Pentaerythritol ethoxylate
|
Resolution 1.90 Å R-free 0.210 |
| 7A86 rsGreen0.7-K206A-F145L partially in the green-off state Deposited 2020-08-30 | Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 2 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain B
3–238（236 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) | PGE TRIETHYLENE GLYCOL × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；293 K；100 mM MES pH 6.5
12 % PEG 20 000
4 % Pentaerythritol ethoxylate
|
Resolution 1.90 Å R-free 0.210 |
| 7A87 rsGreen0.7-K206A-F145M in the green-on state Deposited 2020-08-30 | Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
3–238（236 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) | PEG DI(HYDROXYETHYL)ETHER × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；293 K；100 mM Bis-tris pH 6.5
20 % PEG 1500
|
Resolution 1.75 Å R-free 0.228 |
| 7A88 rsGreen0.7-K206A-F145M in the green-off state Deposited 2020-08-30 | Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
3–238（236 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) | PGE TRIETHYLENE GLYCOL × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；293 K；100 mM MMT
25 % PEG 1500
|
Resolution 1.95 Å R-free 0.226 |
| 7A89 rsGreen0.7-K206A-F145Q in the green-on state Deposited 2020-08-30 | Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
3–238（236 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；293 K；22 % PEG 4000
140 mM Mg(NO3)2
|
Resolution 2.50 Å R-free 0.234 |
| 7A89 rsGreen0.7-K206A-F145Q in the green-on state Deposited 2020-08-30 | Different experimental conditions Different structure-quality metrics | Assembly 2 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain B
3–238（236 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；293 K；22 % PEG 4000
140 mM Mg(NO3)2
|
Resolution 2.50 Å R-free 0.234 |
| 7A8A rsGreen0.7-K206A-F145Q partially in the green-off state Deposited 2020-08-30 | Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
3–238（236 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；293 K；200 mM NaCl
100 mM MES pH 6.0
20 % PEG 6000
|
Resolution 1.93 Å R-free 0.254 |
| 7A8B rsGreen0.7-K206A-F145S partially in the green-on state Deposited 2020-08-30 | Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
3–238（236 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；293 K；100 mM MES pH 6.0
14 % PEG 4000
|
Resolution 1.55 Å R-free 0.232 |
| 7A8C rsGreen0.7-K206A-F145S in the green-off state Deposited 2020-08-30 | Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
3–238（236 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) | PGE TRIETHYLENE GLYCOL × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；293 K；100 mM MES pH 6.5
25 % PEG 4000
400 mM D-galactose
|
Resolution 2.13 Å R-free 0.253 |
| 7A8E rsGreen0.7-K206A-F165W partially in the green-off state Deposited 2020-08-30 | Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
3–238（236 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；293 K；100 mM HEPES pH 7.5
25 % PEG 4000
|
Resolution 2.20 Å R-free 0.261 |
| 7A8F rsGreen0.7-K206A-F165L in the green-on state Deposited 2020-08-30 | Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
3–238（236 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；293 K；100 mM HEPES pH 7.5
25 % PEG 4000
|
Resolution 2.27 Å R-free 0.257 |
| 7A8G rsGreen0.7-K206A-H148G in the green-on state Deposited 2020-08-30 | Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
3–238（236 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；293 K；200 mM TMAO
100mM Tris pH 8.5
20 % Peg 2000 mme
|
Resolution 2.00 Å R-free 0.217 |
| 7A8G rsGreen0.7-K206A-H148G in the green-on state Deposited 2020-08-30 | Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 2 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain B
3–238（236 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) | PGE TRIETHYLENE GLYCOL × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；293 K；200 mM TMAO
100mM Tris pH 8.5
20 % Peg 2000 mme
|
Resolution 2.00 Å R-free 0.217 |
| 7A8H rsGreen0.7-K206A-H148S in the green-on state Deposited 2020-08-30 | Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
3–238（236 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；293 K；100 mM Bis-tris pH 6.5
20 % PEG 5000 mme
|
Resolution 1.70 Å R-free 0.209 |
| 7A8H rsGreen0.7-K206A-H148S in the green-on state Deposited 2020-08-30 | Different experimental conditions Different structure-quality metrics | Assembly 2 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain B
3–238（236 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；293 K；100 mM Bis-tris pH 6.5
20 % PEG 5000 mme
|
Resolution 1.70 Å R-free 0.209 |
| 7A8H rsGreen0.7-K206A-H148S in the green-on state Deposited 2020-08-30 | Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 3 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain C
3–238（236 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) | EDO 1,2-ETHANEDIOL × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；293 K；100 mM Bis-tris pH 6.5
20 % PEG 5000 mme
|
Resolution 1.70 Å R-free 0.209 |
| 7A8H rsGreen0.7-K206A-H148S in the green-on state Deposited 2020-08-30 | Different experimental conditions Different structure-quality metrics | Assembly 4 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain D
3–238（236 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；293 K；100 mM Bis-tris pH 6.5
20 % PEG 5000 mme
|
Resolution 1.70 Å R-free 0.209 |
| 7A8I rsGreen0.7-K206A-H148S partially in the green-off state Deposited 2020-08-30 | Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
3–238（236 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；293 K；100 mM Bis-tris pH 6.5
20 % PEG 5000 mme
|
Resolution 2.00 Å R-free 0.228 |
| 7A8I rsGreen0.7-K206A-H148S partially in the green-off state Deposited 2020-08-30 | Different experimental conditions Different structure-quality metrics | Assembly 2 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain B
3–238（236 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；293 K；100 mM Bis-tris pH 6.5
20 % PEG 5000 mme
|
Resolution 2.00 Å R-free 0.228 |
| 7A8I rsGreen0.7-K206A-H148S partially in the green-off state Deposited 2020-08-30 | Different experimental conditions Different structure-quality metrics | Assembly 3 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain C
3–238（236 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；293 K；100 mM Bis-tris pH 6.5
20 % PEG 5000 mme
|
Resolution 2.00 Å R-free 0.228 |
| 7A8I rsGreen0.7-K206A-H148S partially in the green-off state Deposited 2020-08-30 | Different experimental conditions Different structure-quality metrics | Assembly 4 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain D
3–238（236 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；293 K；100 mM Bis-tris pH 6.5
20 % PEG 5000 mme
|
Resolution 2.00 Å R-free 0.228 |
| 7A8J rsGreen0.7-K206A-H148V in the green-on state Deposited 2020-08-30 | Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
3–238（236 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) | GOL GLYCEROL × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；293 K；100 mM MES pH 6.5
25 % PEG 550 mme
10 mM ZnSO4
|
Resolution 1.85 Å R-free 0.232 |
| 7A8K rsGreen0.7-K206A-H148V partially in the green-off state Deposited 2020-08-30 | Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
3–238（236 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) | PEG DI(HYDROXYETHYL)ETHER × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；293 K；50 mM HEPES pH 7.5
12 % PEG 4000
1% tryptone
|
Resolution 2.25 Å R-free 0.263 |
| 7A8L rsGreen0.7-K206A-N205C in the green-on state Deposited 2020-08-30 | Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
3–238（236 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；293 K；100 mM MES pH 6.5
25 % PEG 3000
|
Resolution 1.75 Å R-free 0.225 |
| 7A8M rsGreen0.7-K206A-N205G in the green-on state Deposited 2020-08-30 | Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
3–238（236 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；293 K；100 mM MES pH 6.0
20 % PEG 2000 mme
10 mM BaCl2
|
Resolution 1.60 Å R-free 0.245 |
| 7A8N rsGreen0.7-K206A-N205L in the green-on state Deposited 2020-08-30 | Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
3–238（236 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；293 K；100 mM HEPES pH 7.5
25 % PEG 8000
|
Resolution 2.10 Å R-free 0.258 |
| 7A8O rsGreen0.7-K206A-N205S in the green-on state Deposited 2020-08-30 | Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
3–238（236 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) | EDO 1,2-ETHANEDIOL × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；293 K；200 mM Maic acid pH 7.0
20 % PEG 3350
|
Resolution 1.60 Å R-free 0.201 |
| 7BWN Crystal Structure of a Designed Protein Heterocatenane Deposited 2020-04-15 | Different construct Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer；Protein × 2 PDB declaration: dimeric |
Chain F
1–238（238 aa）
|
Mutation：R2S,S30R,A72S,Q80R,A206V,M340E,L344K | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 5.5；298.15 K；Bis-Tris, (NH4)2SO4
|
Resolution 2.40 Å R-free 0.239 |
| 7BWN Crystal Structure of a Designed Protein Heterocatenane Deposited 2020-04-15 | Different construct Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 2 Protein heterocomplex Heteromer；Protein × 2 PDB declaration: dimeric |
Chain A
1–238（238 aa）
|
Mutation：R2S,S30R,A72S,Q80R,A206V,M340E,L344K | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 5.5；298.15 K；Bis-Tris, (NH4)2SO4
|
Resolution 2.40 Å R-free 0.239 |
| 7BWN Crystal Structure of a Designed Protein Heterocatenane Deposited 2020-04-15 | Different construct Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 3 Protein heterocomplex Heteromer；Protein × 2 PDB declaration: dimeric |
Chain C
1–238（238 aa）
|
Mutation：R2S,S30R,A72S,Q80R,A206V,M340E,L344K | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 5.5；298.15 K；Bis-Tris, (NH4)2SO4
|
Resolution 2.40 Å R-free 0.239 |
| 7BWN Crystal Structure of a Designed Protein Heterocatenane Deposited 2020-04-15 | Different construct Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 4 Protein heterocomplex Heteromer；Protein × 2 PDB declaration: dimeric |
Chain E
1–238（238 aa）
|
Mutation：R2S,S30R,A72S,Q80R,A206V,M340E,L344K | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 5.5；298.15 K；Bis-Tris, (NH4)2SO4
|
Resolution 2.40 Å R-free 0.239 |
| 7BWN Crystal Structure of a Designed Protein Heterocatenane Deposited 2020-04-15 | Different construct Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 5 Protein heterocomplex Heteromer；Protein × 2 PDB declaration: dimeric |
Chain H
1–238（238 aa）
|
Mutation：R2S,S30R,A72S,Q80R,A206V,M340E,L344K | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 5.5；298.15 K；Bis-Tris, (NH4)2SO4
|
Resolution 2.40 Å R-free 0.239 |
| 7BWN Crystal Structure of a Designed Protein Heterocatenane Deposited 2020-04-15 | Different construct Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 6 Protein heterocomplex Heteromer；Protein × 2 PDB declaration: dimeric |
Chain J
1–238（238 aa）
|
Mutation：R2S,S30R,A72S,Q80R,A206V,M340E,L344K | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 5.5；298.15 K；Bis-Tris, (NH4)2SO4
|
Resolution 2.40 Å R-free 0.239 |
| 7BWN Crystal Structure of a Designed Protein Heterocatenane Deposited 2020-04-15 | Different construct Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 7 Protein heterocomplex Heteromer；Protein × 2 PDB declaration: dimeric |
Chain M
1–238（238 aa）
|
Mutation：R2S,S30R,A72S,Q80R,A206V,M340E,L344K | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 5.5；298.15 K；Bis-Tris, (NH4)2SO4
|
Resolution 2.40 Å R-free 0.239 |
| 7BWN Crystal Structure of a Designed Protein Heterocatenane Deposited 2020-04-15 | Different construct Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 8 Protein heterocomplex Heteromer；Protein × 2 PDB declaration: dimeric |
Chain O
1–238（238 aa）
|
Mutation：R2S,S30R,A72S,Q80R,A206V,M340E,L344K | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 5.5；298.15 K；Bis-Tris, (NH4)2SO4
|
Resolution 2.40 Å R-free 0.239 |
| 7E53 Crystal structure of sfGFP complexed with the nanobody nb2 at 2.2 Angstron resolution Deposited 2021-02-16 | Different construct Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer；Protein × 2 PDB declaration: dimeric |
Chain A
3–232（230 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；293 K；30% (w/v) Polyethylene glycol 400, 100mM CAPS/ Sodium hydroxide, pH 10.5
|
Resolution 2.21 Å R-free 0.258 |
| 8DHY N-terminal fragment of MsbA fused to GFP in complex with copper(II) Deposited 2022-06-28 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Insufficient information Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
3–239（237 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) | CU COPPER (II) ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 7；293 K；70% Tacsimate pH 7.0
|
Resolution 2.15 Å R-free 0.228 |
| 8GW6 AtSLAC1 6D mutant in closed state Deposited 2022-09-16 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Insufficient information Homooligomer；Protein × 3 PDB declaration: trimeric |
Chain A
1–240（240 aa）
Chain B
1–240（240 aa）
Chain C
1–240（240 aa）
|
Mutation：T62D,S65D,S107D,S124D,S146D,T152D Mutation：T62D,S65D,S107D,S124D,S146D,T152D Mutation：T62D,S65D,S107D,S124D,S146D,T152D | CL CHLORIDE ION × 3 Y01 CHOLESTEROL HEMISUCCINATE × 3 |
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.30 Å |
| 8GW7 AtSLAC1 6D mutant in open state Deposited 2022-09-16 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Insufficient information Homooligomer；Protein × 3 PDB declaration: trimeric |
Chain A
1–240（240 aa）
Chain B
1–240（240 aa）
Chain C
1–240（240 aa）
|
Mutation：T62D,S65D,S107D,S124D,S146D,T152D Mutation：T62D,S65D,S107D,S124D,S146D,T152D Mutation：T62D,S65D,S107D,S124D,S146D,T152D | CL CHLORIDE ION × 6 Y01 CHOLESTEROL HEMISUCCINATE × 3 |
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.30 Å |
| 8J6M SIDT1 protein Deposited 2023-04-26 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Insufficient information Homooligomer；Protein × 2 PDB declaration: dimeric |
Chain A
3–236（234 aa）
Chain B
3–236（234 aa）
|
Not recorded | CLR CHOLESTEROL × 8 ZN ZINC ION × 2 NA SODIUM ION × 1 OLA OLEIC ACID × 2 |
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 2.77 Å |
| 8J6O transport T2 Deposited 2023-04-26 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Insufficient information Homooligomer；Protein × 2 PDB declaration: dimeric |
Chain A
3–236（234 aa）
Chain B
3–236（234 aa）
|
Not recorded | NAG 2-acetamido-2-deoxy-beta-D-glucopyranose × 4 ZN ZINC ION × 2 |
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.25 Å |
| 8J7M ion channel Deposited 2023-04-27 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Insufficient information Homooligomer；Protein × 4 PDB declaration: tetrameric |
Chain A
3–235（233 aa）
Chain B
3–235（233 aa）
Chain C
3–235（233 aa）
Chain D
3–235（233 aa）
|
Not recorded | POV (2S)-3-(hexadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate × 4 CLR CHOLESTEROL × 10 |
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.10 Å |
| 8RL9 RECQL5:sfGFP hetero dimer assembled by Di-Gluebody Deposited 2024-01-02 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer；Protein × 4 PDB declaration: tetrameric |
Chain B
1–238（238 aa）
|
Not recorded | ZN ZINC ION × 1 |
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.22 Å |
| 8RLB RECQL5:sfGFP hetero dimer assembled by Di-Gluebody - sfGFP local refinement Deposited 2024-01-02 | Different construct Different mutation/modification Different oligomeric state Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer；Protein × 3 PDB declaration: trimeric |
Chain B
1–238（238 aa）
|
Not recorded | No recorded non-water small molecule |
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 2.99 Å |
| 8RLC SPNS2:sfGFP hetero dimer assembled by Di-Gluebody Deposited 2024-01-02 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer；Protein × 4 PDB declaration: tetrameric |
Chain B
1–238（238 aa）
|
Not recorded | LMT DODECYL-BETA-D-MALTOSIDE × 1 |
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.90 Å |
| 8RLE SPNS2:sfGFP hetero dimer assembled by Di-Gluebody - sfGFP local refinement Deposited 2024-01-02 | Different construct Different mutation/modification Different oligomeric state Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer；Protein × 3 PDB declaration: trimeric |
Chain B
1–238（238 aa）
|
Not recorded | No recorded non-water small molecule |
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.75 Å |
| 8UBG DpHF19 filament Deposited 2023-09-22 | Different construct Different mutation/modification Different oligomeric state Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Protein homooligomer Homooligomer；Protein × 20 PDB declaration: 20-meric |
Chain A
3–238（236 aa）
Chain B
3–238（236 aa）
Chain C
3–238（236 aa）
Chain D
3–238（236 aa）
Chain E
3–238（236 aa）
Chain F
3–238（236 aa）
Chain G
3–238（236 aa）
Chain H
3–238（236 aa）
Chain I
3–238（236 aa）
Chain J
3–238（236 aa）
Chain K
3–238（236 aa）
Chain L
3–238（236 aa）
Chain M
3–238（236 aa）
Chain N
3–238（236 aa）
Chain O
3–238（236 aa）
Chain P
3–238（236 aa）
Chain Q
3–238（236 aa）
Chain R
3–238（236 aa）
Chain S
3–238（236 aa）
Chain T
3–238（236 aa）
|
Not recorded | No recorded non-water small molecule |
ELECTRON MICROSCOPY
cryo-EM buffer
pH 8
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.50 Å |
| 8XAL Cryo-EM structure of SARS-CoV-2 S-BQ.1 in complex with ACE2 Deposited 2023-12-04 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Insufficient information Heteromer；Protein × 5 PDB declaration: pentameric |
Chain I
3–238（236 aa）
Chain J
3–238（236 aa）
|
Not recorded | NAG 2-acetamido-2-deoxy-beta-D-glucopyranose × 31 |
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.4
|
Resolution 3.20 Å |
| 9BCF Chimeric protein of crocodile allergen Cro p 1.0101 and GFP Deposited 2024-04-09 | Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Insufficient information Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
3–238（236 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；298 K；0.2 M calcium acetate, 0.1 M sodium cacodylate pH 6.5, 40% v/v PEG 300
|
Resolution 3.20 Å R-free 0.238 |
| 9BCF Chimeric protein of crocodile allergen Cro p 1.0101 and GFP Deposited 2024-04-09 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 2 Insufficient information Monomer；Protein × 1 PDB declaration: monomeric |
Chain B
3–238（236 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) | CA CALCIUM ION × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；298 K；0.2 M calcium acetate, 0.1 M sodium cacodylate pH 6.5, 40% v/v PEG 300
|
Resolution 3.20 Å R-free 0.238 |
| 9BCF Chimeric protein of crocodile allergen Cro p 1.0101 and GFP Deposited 2024-04-09 | Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 3 Insufficient information Monomer；Protein × 1 PDB declaration: monomeric |
Chain C
3–238（236 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；298 K；0.2 M calcium acetate, 0.1 M sodium cacodylate pH 6.5, 40% v/v PEG 300
|
Resolution 3.20 Å R-free 0.238 |
| 9C74 superfolder Green Fluorescent Protein with meta-nitro-tyrosine incorporated at position 66 Deposited 2024-06-10 | Different construct Different mutation/modification Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
1–238（238 aa）
|
Mutation：Y66mNO2Y Non-standard monomer：Yes (specific site not provided by mmCIF) | NA SODIUM ION × 3 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 7；298 K；1% tryptone, 0.001 M NaN3, 0.05 M Hepes pH 7.0, 20% w/v PEG350
|
Resolution 1.51 Å R-free 0.220 |
| 9IRV MultiBody Refinement of dimeric DARPin and its bound GFP on a symmetric scaffold Deposited 2024-07-16 | Different construct Different oligomeric state Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer；Protein × 3 PDB declaration: trimeric |
Chain C
1–231（231 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
ELECTRON MICROSCOPY
cryo-EM buffer
pH 8
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.47 Å |
| 9J48 GFP bound to 24-mer DARPin-apoferritin model 6c Deposited 2024-08-09 | Different construct Different mutation/modification Different oligomeric state Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer；Protein × 48 PDB declaration: 48-meric |
Chain a
1–231（231 aa）
Chain b
1–231（231 aa）
Chain c
1–231（231 aa）
Chain d
1–231（231 aa）
Chain e
1–231（231 aa）
Chain f
1–231（231 aa）
Chain g
1–231（231 aa）
Chain h
1–231（231 aa）
Chain i
1–231（231 aa）
Chain j
1–231（231 aa）
Chain k
1–231（231 aa）
Chain l
1–231（231 aa）
Chain m
1–231（231 aa）
Chain n
1–231（231 aa）
Chain o
1–231（231 aa）
Chain p
1–231（231 aa）
Chain q
1–231（231 aa）
Chain r
1–231（231 aa）
Chain s
1–231（231 aa）
Chain t
1–231（231 aa）
Chain v
1–231（231 aa）
Chain w
1–231（231 aa）
Chain x
1–231（231 aa）
Chain y
1–231（231 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) Non-standard monomer：Yes (specific site not provided by mmCIF) Non-standard monomer：Yes (specific site not provided by mmCIF) Non-standard monomer：Yes (specific site not provided by mmCIF) Non-standard monomer：Yes (specific site not provided by mmCIF) Non-standard monomer：Yes (specific site not provided by mmCIF) Non-standard monomer：Yes (specific site not provided by mmCIF) Non-standard monomer：Yes (specific site not provided by mmCIF) Non-standard monomer：Yes (specific site not provided by mmCIF) Non-standard monomer：Yes (specific site not provided by mmCIF) Non-standard monomer：Yes (specific site not provided by mmCIF) Non-standard monomer：Yes (specific site not provided by mmCIF) Non-standard monomer：Yes (specific site not provided by mmCIF) Non-standard monomer：Yes (specific site not provided by mmCIF) Non-standard monomer：Yes (specific site not provided by mmCIF) Non-standard monomer：Yes (specific site not provided by mmCIF) Non-standard monomer：Yes (specific site not provided by mmCIF) Non-standard monomer：Yes (specific site not provided by mmCIF) Non-standard monomer：Yes (specific site not provided by mmCIF) Non-standard monomer：Yes (specific site not provided by mmCIF) Non-standard monomer：Yes (specific site not provided by mmCIF) Non-standard monomer：Yes (specific site not provided by mmCIF) Non-standard monomer：Yes (specific site not provided by mmCIF) Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
ELECTRON MICROSCOPY
cryo-EM buffer
pH 8
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.04 Å |
| 9N6A GP23 C-termimal receptor binding domain from TM4 phage Deposited 2025-02-05 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Insufficient information Homooligomer；Protein × 3 PDB declaration: trimeric |
Chain A
1–238（238 aa）
|
Not recorded | SO4 SULFATE ION × 6 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION；289 K；0.2 M Lithium Sulfate
0.1 M MES: NaOH, pH 6
20 % (v/v) 1,4-Butanediol
|
Resolution 2.91 Å R-free 0.280 |
| 9V85 Superfolder GFP fused gp38 receptor binding domain of bacteriophage PP01 Deposited 2025-05-29 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Insufficient information Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
3–238（236 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) | CA CALCIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；293.15 K；10% (w/v) PEG8000, 0.1M Na-HEPES-MOPS, pH7.5, 3mM CaCl2, 3mM MgCl2, 20 % (v/v) ethylene glycol
|
Resolution 2.10 Å R-free 0.208 |
| 9V85 Superfolder GFP fused gp38 receptor binding domain of bacteriophage PP01 Deposited 2025-05-29 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 2 Insufficient information Monomer；Protein × 1 PDB declaration: monomeric |
Chain C
3–238（236 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) | CA CALCIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；293.15 K；10% (w/v) PEG8000, 0.1M Na-HEPES-MOPS, pH7.5, 3mM CaCl2, 3mM MgCl2, 20 % (v/v) ethylene glycol
|
Resolution 2.10 Å R-free 0.208 |
| 9ZG5 Structure of superfolder GFP bound to nanobody 15 Deposited 2025-12-02 | Different construct Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer；Protein × 2 PDB declaration: dimeric |
Chain A
3–239（237 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule | X-RAY DIFFRACTION mmCIF provides none of the parsed conditions | Resolution 3.40 Å R-free 0.331 |
| 9ZG5 Structure of superfolder GFP bound to nanobody 15 Deposited 2025-12-02 | Different construct Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 2 Protein heterocomplex Heteromer；Protein × 2 PDB declaration: dimeric |
Chain B
3–239（237 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule | X-RAY DIFFRACTION mmCIF provides none of the parsed conditions | Resolution 3.40 Å R-free 0.331 |
| 9ZG5 Structure of superfolder GFP bound to nanobody 15 Deposited 2025-12-02 | Different construct Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 3 Protein heterocomplex Heteromer；Protein × 2 PDB declaration: dimeric |
Chain E
3–239（237 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule | X-RAY DIFFRACTION mmCIF provides none of the parsed conditions | Resolution 3.40 Å R-free 0.331 |
| 9ZG5 Structure of superfolder GFP bound to nanobody 15 Deposited 2025-12-02 | Different construct Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 4 Protein heterocomplex Heteromer；Protein × 2 PDB declaration: dimeric |
Chain G
3–239（237 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule | X-RAY DIFFRACTION mmCIF provides none of the parsed conditions | Resolution 3.40 Å R-free 0.331 |
91 other PDB entries and 137 assemblies. Open the comparison page and filter oligomeric states
View Construct and Data Evidence
| UniProt name | A0A059PIQ0_AEQVI |
| Isoform | — |
| PDB entities | 1 |
| Chains and sequence ranges | Author chain A； PDBConstruct 37–270； UniProt 3–238 |
