7ako

Crystal structure of CHK1 kinase domain in complex with a CLASPIN phosphopeptide

Method: X-RAY DIFFRACTION Dmax: 102.9 Å Quality: GOOD

1. Protein Identity and Related Structures Protein Identity & Related Structures

Serine/threonine-protein kinase Chk1

Homo sapiens

UniProt O14757

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein heterocomplex Heteromer Protein × 2 PDB declaration: dimeric(2) Consistent with protein copy count Chain A; UniProt 2–289 Mutation:D10R Claspin × 1 (Q9HAW4) STU STAUROSPORINE × 1 EDO 1,2-ETHANEDIOL × 3 ZN ZINC ION × 1 X-RAY DIFFRACTION X-ray crystallization conditions:VAPOR DIFFUSION, SITTING DROP;287.15 K;200 mM Sodium citrate tribasic dihydrate, 100 mM Bis-Tris propane pH 6.5 and 20% w/v PEG 3350 Resolution 1.80 Å R-free 0.235
2 Protein heterocomplex Heteromer Protein × 2 PDB declaration: dimeric(2) Consistent with protein copy count Chain B; UniProt 2–289 Mutation:D10R Claspin × 1 (Q9HAW4) STU STAUROSPORINE × 1 EDO 1,2-ETHANEDIOL × 4 X-RAY DIFFRACTION X-ray crystallization conditions:VAPOR DIFFUSION, SITTING DROP;287.15 K;200 mM Sodium citrate tribasic dihydrate, 100 mM Bis-Tris propane pH 6.5 and 20% w/v PEG 3350 Resolution 1.80 Å R-free 0.235

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

162 other PDB entries and 171 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name CHK1_HUMAN
Isoform
PDB entities 1
Chains and sequence ranges Author chain A; PDBConstruct 5–292; UniProt 2–289 Author chain B; PDBConstruct 5–292; UniProt 2–289

Claspin

OrganismNot specified

UniProt Q9HAW4

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein heterocomplex Heteromer Protein × 2 PDB declaration: dimeric(2) Consistent with protein copy count Chain C; UniProt 937–952 Non-standard monomer:Yes (specific site not provided by mmCIF) Serine/threonine-protein kinase Chk1 × 1 (O14757) STU STAUROSPORINE × 1 EDO 1,2-ETHANEDIOL × 3 ZN ZINC ION × 1 X-RAY DIFFRACTION X-ray crystallization conditions:VAPOR DIFFUSION, SITTING DROP;287.15 K;200 mM Sodium citrate tribasic dihydrate, 100 mM Bis-Tris propane pH 6.5 and 20% w/v PEG 3350 Resolution 1.80 Å R-free 0.235
2 Protein heterocomplex Heteromer Protein × 2 PDB declaration: dimeric(2) Consistent with protein copy count Chain D; UniProt 937–952 Non-standard monomer:Yes (specific site not provided by mmCIF) Serine/threonine-protein kinase Chk1 × 1 (O14757) STU STAUROSPORINE × 1 EDO 1,2-ETHANEDIOL × 4 X-RAY DIFFRACTION X-ray crystallization conditions:VAPOR DIFFUSION, SITTING DROP;287.15 K;200 mM Sodium citrate tribasic dihydrate, 100 mM Bis-Tris propane pH 6.5 and 20% w/v PEG 3350 Resolution 1.80 Å R-free 0.235

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

4 other PDB entries and 4 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name CLSPN_HUMAN
Isoform
PDB entities 2
Chains and sequence ranges Author chain C; PDBConstruct 1–16; UniProt 937–952 Author chain D; PDBConstruct 1–16; UniProt 937–952

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

SAXS scattering curve SAXS Profile

SAXS profile for 7ako

P(r) Distance Distribution P(r) Distribution

P(r) distribution for 7ako
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2. Structure Basics 2. Structure Basics

Entry ID entry_id7ako
Deposition date deposition_date2020-10-01
Structure title titleCrystal structure of CHK1 kinase domain in complex with a CLASPIN phosphopeptide
Keywords keywordsCELL CYCLE; CELL CYCLE
Experimental Method methodX-RAY DIFFRACTION

3. SAXS Parameters (CRYSOL theoretical calculation) 3. SAXS Parameters (CRYSOL)

Radius of gyration Rg (Guinier) rg_guinier30.99
Radius of gyration Rg (electron density) rg_electron30.78
Forward intensity I(0) i067949500.00
Molecular weight molecular_weight66211.0 kDa
Excluded volume excluded_volume83397 ų
Envelope volume envelope_volume103810 ų
Hydration-shell volume shell_volume29592 ų
Envelope diameter envelope_diameter105.9
Shell Rg shell_rg35.97
Envelope Rg envelope_rg30.55
Shape Rg shape_rg30.80
Total Rg total_rg31.18
Total atoms total_atoms4656
Residues n_residues559
Spherical-harmonic order n_harmonics20
q range q_range— – 0.5000 −1
Data points n_points101
Shell type shell_typedirectional
Solvent electron density solvent_density0.3340 e/ų
Shell contrast contrast_shell0.0300 e/ų
CRYSOL version crysol_version4.1.3

4. P(r) Distance Distribution (GNOM inversion) 4. P(r) Analysis (GNOM)

Maximum dimension Dmax dmax102.9
Rg (real space) rg_real31.17
Rg uncertainty (real space) rg_real_error0.91
I(0) (real space) i0_real6.7950e+07
I(0) uncertainty (real space) i0_real_error1.0710e+06
Rg (reciprocal space) rg_reciprocal31.10
I(0) (reciprocal space) i0_reciprocal67950000.0000
Solution quality estimate total_estimate0.8636
Solution quality rating solution_quality GOOD a GOOD solution
P(r) peaks n_peaks1
Primary peak position r_peak_primary28.3
Skewness Skewness skewness0.428
Kurtosis Kurtosis kurtosis-0.528
Angular range angular_range— – 0.2550 −1
Current regularization parameter α current_alpha0.0000
Highest regularization parameter α highest_alpha13730000.0000
Real-space data points n_real_points52
GNOM version gnom_version4.1.3
Quality Criteria quality_criteria AN1: 0.000; Oscil: 0.847; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.790; Smooth: 0.891

5. Crystallography and Experiment 5. Crystallography & Experiment

6. Entities and Polymers Entities & Polymers (6)

8. Citations (1)

9. Files and Curves (10)