7bko

Crystal structure of CHK1 complex with compound 9

Method: X-RAY DIFFRACTION Dmax: 66.9 Å Quality: GOOD

1. Protein Identity and Related Structures Protein Identity & Related Structures

Serine/threonine-protein kinase Chk1

Homo sapiens

UniProt O14757

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein monomer Monomer Protein × 1 PDB declaration: monomeric(1) Consistent with protein copy count Chain A; UniProt 1–289 Not recorded TVW 1H-pyrazolo[3,4-d]pyrimidin-4-amine × 1 X-RAY DIFFRACTION X-ray crystallization conditions:VAPOR DIFFUSION, SITTING DROP;pH 7.5;298 K;10-30% PEG8K 0.1M HEPES pH 7.5 15% isopropanol Resolution 2.30 Å R-free 0.331

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

162 other PDB entries and 172 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name CHK1_HUMAN
Isoform
PDB entities 1
Chains and sequence ranges Author chain A; PDBConstruct 1–289; UniProt 1–289

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

SAXS scattering curve SAXS Profile

SAXS profile for 7bko

P(r) Distance Distribution P(r) Distribution

P(r) distribution for 7bko
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2. Structure Basics 2. Structure Basics

Entry ID entry_id7bko
Deposition date deposition_date2021-01-16
Structure title titleCrystal structure of CHK1 complex with compound 9
Keywords keywords;PARKINSON'S DISEASE, LEUCINE-RICH REPEAT KINASE 2, LRRK2, CHECKPOINT KINASE 1, CHK1, MUTANT, SURROGATE, KINASE INHIBITOR, SBDD, TRANSFERASE ;; TRANSFERASE
Experimental Method methodX-RAY DIFFRACTION

3. SAXS Parameters (CRYSOL theoretical calculation) 3. SAXS Parameters (CRYSOL)

Radius of gyration Rg (Guinier) rg_guinier20.43
Radius of gyration Rg (electron density) rg_electron19.26
Forward intensity I(0) i015399300.00
Molecular weight molecular_weight29952.0 kDa
Excluded volume excluded_volume37680 ų
Envelope volume envelope_volume44772 ų
Hydration-shell volume shell_volume19557 ų
Envelope diameter envelope_diameter69.9
Shell Rg shell_rg25.59
Envelope Rg envelope_rg19.69
Shape Rg shape_rg19.26
Total Rg total_rg20.20
Total atoms total_atoms2111
Residues n_residues259
Spherical-harmonic order n_harmonics20
q range q_range— – 0.5000 −1
Data points n_points101
Shell type shell_typedirectional
Solvent electron density solvent_density0.3340 e/ų
Shell contrast contrast_shell0.0300 e/ų
CRYSOL version crysol_version4.1.3

4. P(r) Distance Distribution (GNOM inversion) 4. P(r) Analysis (GNOM)

Maximum dimension Dmax dmax66.9
Rg (real space) rg_real20.38
Rg uncertainty (real space) rg_real_error0.45
I(0) (real space) i0_real1.5400e+07
I(0) uncertainty (real space) i0_real_error1.9830e+05
Rg (reciprocal space) rg_reciprocal20.39
I(0) (reciprocal space) i0_reciprocal15400000.0000
Solution quality estimate total_estimate0.8087
Solution quality rating solution_quality GOOD a GOOD solution
P(r) peaks n_peaks3
Primary peak position r_peak_primary24.8
Skewness Skewness skewness0.300
Kurtosis Kurtosis kurtosis-0.294
Angular range angular_range— – 0.3900 −1
Current regularization parameter α current_alpha0.0000
Highest regularization parameter α highest_alpha3745000.0000
Real-space data points n_real_points71
GNOM version gnom_version4.1.3
Quality Criteria quality_criteria AN1: 0.000; Oscil: 0.837; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 1.000; Smooth: 0.000

5. Crystallography and Experiment 5. Crystallography & Experiment

6. Entities and Polymers Entities & Polymers (3)

7. Fold Classification (SCOP + CATH) 1 domains

SCOP 2.08 (1 domains)

Domain ID domain_idd7bkoa_
Class classd — Alpha and beta proteins (a+b)
Fold Fold foldd.144 — Protein kinase-like (PK-like)
Superfamily Superfamily superfamilyd.144.1 — Protein kinase-like (PK-like)
Family Family familyd.144.1.7 — Protein kinases, catalytic subunit

8. Citations (1)

9. Files and Curves (10)