SAXSdb — 7pkr

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1. Protein Identity and Related Structures Protein Identity & Related Structures

Major vault protein

Rattus norvegicus

State in the Current Structure

Assembly	Physical composition	Protein state	Molecular copy count	Associated components	Data consistency
1	Protein homooligomer	Homooligomer	Protein 78	No other associated polymer	Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence

UniProt name	MVP_RAT
Isoform	—
PDB entities	1
Chains and sequence ranges	Author chain A； PDBConstruct 1–861； UniProt 1–861 Author chain AA； PDBConstruct 1–861； UniProt 1–861 Author chain AB； PDBConstruct 1–861； UniProt 1–861 Author chain AC； PDBConstruct 1–861； UniProt 1–861 Author chain B； PDBConstruct 1–861； UniProt 1–861 Author chain BA； PDBConstruct 1–861； UniProt 1–861 Author chain BB； PDBConstruct 1–861； UniProt 1–861 Author chain C； PDBConstruct 1–861； UniProt 1–861 Author chain CA； PDBConstruct 1–861； UniProt 1–861 Author chain CB； PDBConstruct 1–861； UniProt 1–861 Author chain D； PDBConstruct 1–861； UniProt 1–861 Author chain DA； PDBConstruct 1–861； UniProt 1–861 Author chain DB； PDBConstruct 1–861； UniProt 1–861 Author chain E； PDBConstruct 1–861； UniProt 1–861 Author chain EA； PDBConstruct 1–861； UniProt 1–861 Author chain EB； PDBConstruct 1–861； UniProt 1–861 Author chain F； PDBConstruct 1–861； UniProt 1–861 Author chain FA； PDBConstruct 1–861； UniProt 1–861 Author chain FB； PDBConstruct 1–861； UniProt 1–861 Author chain G； PDBConstruct 1–861； UniProt 1–861 Author chain GA； PDBConstruct 1–861； UniProt 1–861 Author chain GB； PDBConstruct 1–861； UniProt 1–861 Author chain H； PDBConstruct 1–861； UniProt 1–861 Author chain HA； PDBConstruct 1–861； UniProt 1–861 Author chain HB； PDBConstruct 1–861； UniProt 1–861 Author chain I； PDBConstruct 1–861； UniProt 1–861 Author chain IA； PDBConstruct 1–861； UniProt 1–861 Author chain IB； PDBConstruct 1–861； UniProt 1–861 Author chain J； PDBConstruct 1–861； UniProt 1–861 Author chain JA； PDBConstruct 1–861； UniProt 1–861 Author chain JB； PDBConstruct 1–861； UniProt 1–861 Author chain K； PDBConstruct 1–861； UniProt 1–861 Author chain KA； PDBConstruct 1–861； UniProt 1–861 Author chain KB； PDBConstruct 1–861； UniProt 1–861 Author chain L； PDBConstruct 1–861； UniProt 1–861 Author chain LA； PDBConstruct 1–861； UniProt 1–861 Author chain LB； PDBConstruct 1–861； UniProt 1–861 Author chain M； PDBConstruct 1–861； UniProt 1–861 Author chain MA； PDBConstruct 1–861； UniProt 1–861 Author chain MB； PDBConstruct 1–861； UniProt 1–861 Author chain N； PDBConstruct 1–861； UniProt 1–861 Author chain NA； PDBConstruct 1–861； UniProt 1–861 Author chain NB； PDBConstruct 1–861； UniProt 1–861 Author chain O； PDBConstruct 1–861； UniProt 1–861 Author chain OA； PDBConstruct 1–861； UniProt 1–861 Author chain OB； PDBConstruct 1–861； UniProt 1–861 Author chain P； PDBConstruct 1–861； UniProt 1–861 Author chain PA； PDBConstruct 1–861； UniProt 1–861 Author chain PB； PDBConstruct 1–861； UniProt 1–861 Author chain Q； PDBConstruct 1–861； UniProt 1–861 Author chain QA； PDBConstruct 1–861； UniProt 1–861 Author chain QB； PDBConstruct 1–861； UniProt 1–861 Author chain R； PDBConstruct 1–861； UniProt 1–861 Author chain RA； PDBConstruct 1–861； UniProt 1–861 Author chain RB； PDBConstruct 1–861； UniProt 1–861 Author chain S； PDBConstruct 1–861； UniProt 1–861 Author chain SA； PDBConstruct 1–861； UniProt 1–861 Author chain SB； PDBConstruct 1–861； UniProt 1–861 Author chain T； PDBConstruct 1–861； UniProt 1–861 Author chain TA； PDBConstruct 1–861； UniProt 1–861 Author chain TB； PDBConstruct 1–861； UniProt 1–861 Author chain UA； PDBConstruct 1–861； UniProt 1–861 Author chain UB； PDBConstruct 1–861； UniProt 1–861 Author chain V； PDBConstruct 1–861； UniProt 1–861 Author chain VA； PDBConstruct 1–861； UniProt 1–861 Author chain VB； PDBConstruct 1–861； UniProt 1–861 Author chain W； PDBConstruct 1–861； UniProt 1–861 Author chain WA； PDBConstruct 1–861； UniProt 1–861 Author chain WB； PDBConstruct 1–861； UniProt 1–861 Author chain X； PDBConstruct 1–861； UniProt 1–861 Author chain XA； PDBConstruct 1–861； UniProt 1–861 Author chain XB； PDBConstruct 1–861； UniProt 1–861 Author chain Y； PDBConstruct 1–861； UniProt 1–861 Author chain YA； PDBConstruct 1–861； UniProt 1–861 Author chain YB； PDBConstruct 1–861； UniProt 1–861 Author chain Z； PDBConstruct 1–861； UniProt 1–861 Author chain ZA； PDBConstruct 1–861； UniProt 1–861 Author chain ZB； PDBConstruct 1–861； UniProt 1–861

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

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2. Structure Basics 2. Structure Basics

Entry ID entry_id	7pkr
Deposition date deposition_date	2021-08-26
Structure title title	Vault structure in primmed conformation
Keywords keywords	Transport, STRUCTURAL PROTEIN; STRUCTURAL PROTEIN
Experimental Method method	ELECTRON MICROSCOPY

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3. Official assembly/model SAXS Official SAXS Profiles

This page reads only the latest assembly calculations. Every curve maps to an explicit PDB entry, official biological assembly and coordinate model.

7pkr__assembly_1__model_1

Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

Download this curve (.dat)

7pkr__assembly_1__model_1 | I(q)

100 plotted points; both axes use logarithmic scales.

7pkr__assembly_1__model_1 | P(r) · Pending

P(r) will be calculated and displayed separately for the same assembly/model.

Rg（Guinier）	0.00 Å
Rg (electron density)	223.80 Å
Total Rg	224.10 Å
Atom count	479700
Residues	60996
Excluded volume	8524800 Å³
Maximum q	0.500 Å⁻¹

Assembly	Model	Structure unit	Oligomeric description	Status	CRYSOL	Actions
1	1	`7pkr__assembly_1__model_1`	78-meric （78）	Success	4.1.3-1-20251215 (887e7ef)	View Download

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4. Crystallography and Experiment 4. Crystallography & Experiment

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5. Entities and Polymers Entities & Polymers (1)

Entity 1 Entity 1 polymer

Description description	Major vault protein
Molecular weight formula_weight	95920.1 kDa
Source method src_method	man
Copy count entity_count	78

Polymer Polymer

Polymer type type	polypeptide(L)
Chain IDs strand_id	;A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB,GB,HB,IB,JB,KB,LB,MB,NB,OB,PB,QB,RB,SB,TB,UB,VB,WB,XB,YB,ZB,AC ;
Atom count atom_count	479700

MATEEAIIRIPPYHYIHVLDQNSNVSRVEVGPKTYIRQDNERVLFAPVRMVTVPPRHYCIVANPVSRDTQSSVLFDITGQVRLRHADQEIRLAQDPFPLYPGEVLEKDITPLQVVLPNTALHLKALLDFEDKNGDKVMAGDEWLFEGPGTYIPQKEVEVVEIIQATVIKQNQALRLRARKECFDREGKGRVTGEEWLVRSVGAYLPAVFEEVLDLVDAVILTEKTALHLRALQNFRDLRGVLHRTGEEWLVTVQDTEAHVPDVYEEVLGVVPITTLGPRHYCVILDPMGPDGKNQLGQKRVVKGEKSFFLQPGERLERGIQDVYVLSEQQGLLLKALQPLEEGESEEKVSHQAGDCWLIRGPLEYVPSAKVEVVEERQAIPLDQNEGIYVQDVKTGKVRAVIGSTYMLTQDEVLWEKELPSGVEELLNLGHDPLADRGQKGTAKPLQPSAPRNKTRVVSYRVPHNAAVQVYDYRAKRARVVFGPELVTLDPEEQFTVLSLSAGRPKRPHARRALCLLLGPDFFTDVITIETADHARLQLQLAYNWHFELKNRNDPAEAAKLFSVPDFVGDACKAIASRVRGAVASVTFDDFHKNSARIIRMAVFGFEMSEDTGPDGTLLPKARDQAVFPQNGLVVSSVDVQSVEPVDQRTRDALQRSVQLAIEITTNSQEAAAKHEAQRLEQEARGRLERQKILDQSEAEKARKELLELEAMSMAVESTGNAKAEAESRAEAARIEGEGSVLQAKLKAQALAIETEAELERVKKVREMELIYARAQLELEVSKAQQLANVEAKKFKEMTEALGPGTIRDLAVAGPEMQVKLLQSLGLKSTLITDGSSPINLFSTAFGLLGLGSDGQPPAQK

Source Source

Source organism organism	Rattus norvegicus
Common name common_name	Rat
NCBI taxonomy ID ncbi_taxonomy_id	10116
Host organism host_organism	Trichoplusia ni

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Unit-cell length a length_a	1.000 Å
Unit-cell length b length_b	1.000 Å
Unit-cell length c length_c	1.000 Å
Unit-cell angle α angle_alpha	90.00 °
Unit-cell angle β angle_beta	90.00 °
Unit-cell angle γ angle_gamma	90.00 °
Molecules per unit cell Z z_pdb	—

Space group space_group	P 1
Space-group number int_tables_number	1
Crystal system crystal_system	—

Resolution resolution	3.80 Å
Resolution测定Method resolution_method	—
颗粒数 num_particles	9793

Vault structure in primmed conformation

1. Protein Identity and Related Structures Protein Identity & Related Structures

Major vault protein

State in the Current Structure

Other States of the Same Protein in the Database

2. Structure Basics 2. Structure Basics

3. Official assembly/model SAXS Official SAXS Profiles

7pkr__assembly_1__model_1

7pkr__assembly_1__model_1 | I(q)

7pkr__assembly_1__model_1 | P(r) · Pending

4. Crystallography and Experiment 4. Crystallography & Experiment

Unit cell Unit Cell

Symmetry Symmetry

冷冻电镜 EM 3D

5. Entities and Polymers Entities & Polymers (1)

Entity 1 Entity 1 polymer

Polymer Polymer

Source Source

7. Citations (1)

Vault structure in primmed conformation

1. Protein Identity and Related Structures Protein Identity & Related Structures

Major vault protein

State in the Current Structure

Other States of the Same Protein in the Database

Monomer

Homodimer

Homotetramer

Other homooligomers

Heteromeric or nucleic-acid complex

2. Structure Basics 2. Structure Basics

3. Official assembly/model SAXS Official SAXS Profiles

7pkr__assembly_1__model_1

7pkr__assembly_1__model_1 | I(q)

7pkr__assembly_1__model_1 | P(r) · Pending

4. Crystallography and Experiment 4. Crystallography & Experiment

Unit cell Unit Cell

Symmetry Symmetry

冷冻电镜 EM 3D

5. Entities and Polymers Entities & Polymers (1)

Entity 1 Entity 1 polymer

Polymer Polymer

Source Source

7. Citations (1)