SAXSdb — 7rk9

▼

1. Protein Identity and Related Structures Protein Identity & Related Structures

Capsid protein

Adeno-associated virus - 1

State in the Current Structure

Assembly	Physical composition	Protein state	Molecular copy count	Associated components	Data consistency
1	Protein homooligomer	Homooligomer	Protein 60	No other associated polymer	Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence

UniProt name	Q9WBP8_9VIRU
Isoform	—
PDB entities	1
Chains and sequence ranges	Author chain A； PDBConstruct 1–743； UniProt 1–736 Author chain AA； PDBConstruct 1–743； UniProt 1–736 Author chain AB； PDBConstruct 1–743； UniProt 1–736 Author chain B； PDBConstruct 1–743； UniProt 1–736 Author chain BA； PDBConstruct 1–743； UniProt 1–736 Author chain BB； PDBConstruct 1–743； UniProt 1–736 Author chain C； PDBConstruct 1–743； UniProt 1–736 Author chain CA； PDBConstruct 1–743； UniProt 1–736 Author chain CB； PDBConstruct 1–743； UniProt 1–736 Author chain D； PDBConstruct 1–743； UniProt 1–736 Author chain DA； PDBConstruct 1–743； UniProt 1–736 Author chain DB； PDBConstruct 1–743； UniProt 1–736 Author chain E； PDBConstruct 1–743； UniProt 1–736 Author chain EA； PDBConstruct 1–743； UniProt 1–736 Author chain EB； PDBConstruct 1–743； UniProt 1–736 Author chain F； PDBConstruct 1–743； UniProt 1–736 Author chain FA； PDBConstruct 1–743； UniProt 1–736 Author chain FB； PDBConstruct 1–743； UniProt 1–736 Author chain G； PDBConstruct 1–743； UniProt 1–736 Author chain GA； PDBConstruct 1–743； UniProt 1–736 Author chain GB； PDBConstruct 1–743； UniProt 1–736 Author chain H； PDBConstruct 1–743； UniProt 1–736 Author chain HA； PDBConstruct 1–743； UniProt 1–736 Author chain HB； PDBConstruct 1–743； UniProt 1–736 Author chain I； PDBConstruct 1–743； UniProt 1–736 Author chain IA； PDBConstruct 1–743； UniProt 1–736 Author chain IB； PDBConstruct 1–743； UniProt 1–736 Author chain J； PDBConstruct 1–743； UniProt 1–736 Author chain JA； PDBConstruct 1–743； UniProt 1–736 Author chain K； PDBConstruct 1–743； UniProt 1–736 Author chain KA； PDBConstruct 1–743； UniProt 1–736 Author chain L； PDBConstruct 1–743； UniProt 1–736 Author chain LA； PDBConstruct 1–743； UniProt 1–736 Author chain M； PDBConstruct 1–743； UniProt 1–736 Author chain MA； PDBConstruct 1–743； UniProt 1–736 Author chain N； PDBConstruct 1–743； UniProt 1–736 Author chain NA； PDBConstruct 1–743； UniProt 1–736 Author chain O； PDBConstruct 1–743； UniProt 1–736 Author chain OA； PDBConstruct 1–743； UniProt 1–736 Author chain P； PDBConstruct 1–743； UniProt 1–736 Author chain PA； PDBConstruct 1–743； UniProt 1–736 Author chain Q； PDBConstruct 1–743； UniProt 1–736 Author chain QA； PDBConstruct 1–743； UniProt 1–736 Author chain R； PDBConstruct 1–743； UniProt 1–736 Author chain RA； PDBConstruct 1–743； UniProt 1–736 Author chain S； PDBConstruct 1–743； UniProt 1–736 Author chain SA； PDBConstruct 1–743； UniProt 1–736 Author chain T； PDBConstruct 1–743； UniProt 1–736 Author chain TA； PDBConstruct 1–743； UniProt 1–736 Author chain UA； PDBConstruct 1–743； UniProt 1–736 Author chain V； PDBConstruct 1–743； UniProt 1–736 Author chain VA； PDBConstruct 1–743； UniProt 1–736 Author chain W； PDBConstruct 1–743； UniProt 1–736 Author chain WA； PDBConstruct 1–743； UniProt 1–736 Author chain X； PDBConstruct 1–743； UniProt 1–736 Author chain XA； PDBConstruct 1–743； UniProt 1–736 Author chain Y； PDBConstruct 1–743； UniProt 1–736 Author chain YA； PDBConstruct 1–743； UniProt 1–736 Author chain Z； PDBConstruct 1–743； UniProt 1–736 Author chain ZA； PDBConstruct 1–743； UniProt 1–736

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

▼

2. Structure Basics 2. Structure Basics

Entry ID entry_id	7rk9
Deposition date deposition_date	2021-07-22
Structure title title	Cryo-EM Structure of Adeno-Associated Virus Serotype 1 with Engineered Peptide Domain PHP.B (AAV1-PHP.B)
Keywords keywords	Gene Therapy, Adeno-associated virus, AAV, VIRUS; VIRUS
Experimental Method method	ELECTRON MICROSCOPY

▼

3. Official assembly/model SAXS Official SAXS Profiles

This page reads only the latest assembly calculations. Every curve maps to an explicit PDB entry, official biological assembly and coordinate model.

7rk9__assembly_1__model_1

Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

Download this curve (.dat)

7rk9__assembly_1__model_1 | I(q)

100 plotted points; both axes use logarithmic scales.

7rk9__assembly_1__model_1 | P(r) · Pending

P(r) will be calculated and displayed separately for the same assembly/model.

Rg（Guinier）	0.00 Å
Rg (electron density)	109.00 Å
Total Rg	109.20 Å
Atom count	247500
Residues	31380
Excluded volume	4339200 Å³
Maximum q	0.500 Å⁻¹

Assembly	Model	Structure unit	Oligomeric description	Status	CRYSOL	Actions
1	1	`7rk9__assembly_1__model_1`	60-meric （60）	Success	4.1.3-1-20251215 (887e7ef)	View Download

▶

4. Crystallography and Experiment 4. Crystallography & Experiment

▶

5. Entities and Polymers Entities & Polymers (1)

▶

Unit-cell length a length_a	1.000 Å
Unit-cell length b length_b	1.000 Å
Unit-cell length c length_c	1.000 Å
Unit-cell angle α angle_alpha	90.00 °
Unit-cell angle β angle_beta	90.00 °
Unit-cell angle γ angle_gamma	90.00 °
Molecules per unit cell Z z_pdb	—

Space group space_group	P 1
Space-group number int_tables_number	1
Crystal system crystal_system	triclinic

Resolution resolution	2.32 Å
Resolution测定Method resolution_method	—
颗粒数 num_particles	59346

Description description	Capsid protein
Molecular weight formula_weight	82212.9 kDa
Source method src_method	man
Copy count entity_count	60

Polymer type type	polypeptide(L)
Chain IDs strand_id	;A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB,GB,HB,IB ;
Atom count atom_count	247500

Cryo-EM Structure of Adeno-Associated Virus Serotype 1 with Engineered Peptide Domain PHP.B (AAV1-PHP.B)

1. Protein Identity and Related Structures Protein Identity & Related Structures

Capsid protein

State in the Current Structure

Other States of the Same Protein in the Database

2. Structure Basics 2. Structure Basics

3. Official assembly/model SAXS Official SAXS Profiles

7rk9__assembly_1__model_1

7rk9__assembly_1__model_1 | I(q)

7rk9__assembly_1__model_1 | P(r) · Pending

4. Crystallography and Experiment 4. Crystallography & Experiment

Unit cell Unit Cell

Symmetry Symmetry

冷冻电镜 EM 3D

5. Entities and Polymers Entities & Polymers (1)

Entity 1 Entity 1 polymer

Polymer Polymer

Source Source

7. Citations (1)

Source organism organism	Adeno-associated virus - 1
NCBI taxonomy ID ncbi_taxonomy_id	85106
Host organism host_organism	Homo sapiens

Cryo-EM Structure of Adeno-Associated Virus Serotype 1 with Engineered Peptide Domain PHP.B (AAV1-PHP.B)

1. Protein Identity and Related Structures Protein Identity & Related Structures

Capsid protein

State in the Current Structure

Other States of the Same Protein in the Database

Monomer

Homodimer

Homotetramer

Other homooligomers

Heteromeric or nucleic-acid complex

2. Structure Basics 2. Structure Basics

3. Official assembly/model SAXS Official SAXS Profiles

7rk9__assembly_1__model_1

7rk9__assembly_1__model_1 | I(q)

7rk9__assembly_1__model_1 | P(r) · Pending

4. Crystallography and Experiment 4. Crystallography & Experiment

Unit cell Unit Cell

Symmetry Symmetry

冷冻电镜 EM 3D

5. Entities and Polymers Entities & Polymers (1)

Entity 1 Entity 1 polymer

Polymer Polymer

Source Source

7. Citations (1)