SAXSdb — 7vs5

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1. Protein Identity and Related Structures Protein Identity & Related Structures

Major capsid protein

OrganismNot specified

State in the Current Structure

Assembly	Physical composition	Protein state	Molecular copy count	Associated components	Data consistency
1	Protein heterocomplex	Heteromer	Protein 1845	Capsid vertex protein × 55 （P19896） Small outer capsid protein × 860 （P03715）	Consistent with protein count
2	Protein heterocomplex	Heteromer	Protein 369	Capsid vertex protein × 11 （P19896） Small outer capsid protein × 172 （P03715）	Consistent with protein count
3	Protein heterocomplex	Heteromer	Protein 369	Capsid vertex protein × 11 （P19896） Small outer capsid protein × 172 （P03715）	Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence

UniProt name	CAPSH_BPT4
Isoform	—
PDB entities	1
Chains and sequence ranges	Author chain aa； PDBConstruct 1–521； UniProt 1–521 Author chain ab； PDBConstruct 1–521； UniProt 1–521 Author chain ac； PDBConstruct 1–521； UniProt 1–521 Author chain ad； PDBConstruct 1–521； UniProt 1–521 Author chain ae； PDBConstruct 1–521； UniProt 1–521 Author chain af； PDBConstruct 1–521； UniProt 1–521 Author chain ag； PDBConstruct 1–521； UniProt 1–521 Author chain ah； PDBConstruct 1–521； UniProt 1–521 Author chain ai； PDBConstruct 1–521； UniProt 1–521 Author chain aj； PDBConstruct 1–521； UniProt 1–521 Author chain ak； PDBConstruct 1–521； UniProt 1–521 Author chain al； PDBConstruct 1–521； UniProt 1–521 Author chain am； PDBConstruct 1–521； UniProt 1–521 Author chain an； PDBConstruct 1–521； UniProt 1–521 Author chain ao； PDBConstruct 1–521； UniProt 1–521 Author chain ap； PDBConstruct 1–521； UniProt 1–521 Author chain aq； PDBConstruct 1–521； UniProt 1–521 Author chain ar； PDBConstruct 1–521； UniProt 1–521 Author chain as； PDBConstruct 1–521； UniProt 1–521 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Capsid vertex protein

OrganismNot specified

UniProt P19896

State in the Current Structure

Assembly	Physical composition	Protein state	Molecular copy count	Associated components	Data consistency
1	Protein heterocomplex	Heteromer	Protein 1845	Major capsid protein × 930 （P04535） Small outer capsid protein × 860 （P03715）	Consistent with protein count
2	Protein heterocomplex	Heteromer	Protein 369	Major capsid protein × 186 （P04535） Small outer capsid protein × 172 （P03715）	Consistent with protein count
3	Protein heterocomplex	Heteromer	Protein 369	Major capsid protein × 186 （P04535） Small outer capsid protein × 172 （P03715）	Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence

UniProt name	CAPSP_BPT4
Isoform	—
PDB entities	2
Chains and sequence ranges	Author chain he； PDBConstruct 1–427； UniProt 1–427 Author chain hf； PDBConstruct 1–427； UniProt 1–427 Author chain hg； PDBConstruct 1–427； UniProt 1–427 Author chain hh； PDBConstruct 1–427； UniProt 1–427 Author chain hi； PDBConstruct 1–427； UniProt 1–427 Author chain hj； PDBConstruct 1–427； UniProt 1–427 Author chain hk； PDBConstruct 1–427； UniProt 1–427 Author chain hl； PDBConstruct 1–427； UniProt 1–427 Author chain hm； PDBConstruct 1–427； UniProt 1–427 Author chain hn； PDBConstruct 1–427； UniProt 1–427 Author chain ho； PDBConstruct 1–427； UniProt 1–427

Small outer capsid protein

OrganismNot specified

UniProt P03715

State in the Current Structure

Assembly	Physical composition	Protein state	Molecular copy count	Associated components	Data consistency
1	Protein heterocomplex	Heteromer	Protein 1845	Major capsid protein × 930 （P04535） Capsid vertex protein × 55 （P19896）	Consistent with protein count
2	Protein heterocomplex	Heteromer	Protein 369	Major capsid protein × 186 （P04535） Capsid vertex protein × 11 （P19896）	Consistent with protein count
3	Protein heterocomplex	Heteromer	Protein 369	Major capsid protein × 186 （P04535） Capsid vertex protein × 11 （P19896）	Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence

UniProt name	SOC_BPT4
Isoform	—
PDB entities	3
Chains and sequence ranges	Author chain hp； PDBConstruct 1–80； UniProt 1–80 Author chain hq； PDBConstruct 1–80； UniProt 1–80 Author chain hr； PDBConstruct 1–80； UniProt 1–80 Author chain hs； PDBConstruct 1–80； UniProt 1–80 Author chain ht； PDBConstruct 1–80； UniProt 1–80 Author chain hu； PDBConstruct 1–80； UniProt 1–80 Author chain hv； PDBConstruct 1–80； UniProt 1–80 Author chain hw； PDBConstruct 1–80； UniProt 1–80 Author chain hx； PDBConstruct 1–80； UniProt 1–80 Author chain hy； PDBConstruct 1–80； UniProt 1–80 Author chain hz； PDBConstruct 1–80； UniProt 1–80 Author chain ia； PDBConstruct 1–80； UniProt 1–80 Author chain ib； PDBConstruct 1–80； UniProt 1–80 Author chain ic； PDBConstruct 1–80； UniProt 1–80 Author chain id； PDBConstruct 1–80； UniProt 1–80 Author chain ie； PDBConstruct 1–80； UniProt 1–80 Author chain if； PDBConstruct 1–80； UniProt 1–80 Author chain ig； PDBConstruct 1–80； UniProt 1–80 Author chain ih； PDBConstruct 1–80； UniProt 1–80 Author chain ii； PDBConstruct 1–80； 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chain nx； PDBConstruct 1–80； UniProt 1–80 Author chain ny； PDBConstruct 1–80； UniProt 1–80 Author chain nz； PDBConstruct 1–80； UniProt 1–80 Author chain oa； PDBConstruct 1–80； UniProt 1–80 Author chain ob； PDBConstruct 1–80； UniProt 1–80 Author chain oc； PDBConstruct 1–80； UniProt 1–80 Author chain od； PDBConstruct 1–80； UniProt 1–80 Author chain oe； PDBConstruct 1–80； UniProt 1–80 Author chain of； PDBConstruct 1–80； UniProt 1–80 Author chain og； PDBConstruct 1–80； UniProt 1–80

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

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2. Structure Basics 2. Structure Basics

Entry ID entry_id	7vs5
Deposition date deposition_date	2021-10-25
Structure title title	The expanded head structure of phage T4
Keywords keywords	;virus assembly, capsid expansion, capsid length control, prolate virus structure, virus decoration proteins, capsid stabilization, VIRUS ;; VIRUS
Experimental Method method	ELECTRON MICROSCOPY

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3. Official assembly/model SAXS Official SAXS Profiles

This page reads only the latest assembly calculations. Every curve maps to an explicit PDB entry, official biological assembly and coordinate model.

7vs5__assembly_1__model_1

Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

Download this curve (.dat)

7vs5__assembly_1__model_1 | I(q)

100 plotted points; both axes use logarithmic scales.

7vs5__assembly_1__model_1 | P(r) · Pending

P(r) will be calculated and displayed separately for the same assembly/model.

Rg（Guinier）	0.00 Å
Rg (electron density)	461.70 Å
Total Rg	461.70 Å
Atom count	3905190
Residues	514715
Excluded volume	69311000 Å³
Maximum q	0.500 Å⁻¹

Assembly	Model	Structure unit	Oligomeric description	Status	CRYSOL	Actions
1	1	`7vs5__assembly_1__model_1`	1845-meric （1845）	Success	4.1.3-1-20251215 (887e7ef)	View Download
2	1	`7vs5__assembly_2__model_1`	369-meric （369）	Excluded	—	—
	Exclusion reason： Auxiliary symmetry representation; not a complete or representative biological assembly.
3	1	`7vs5__assembly_3__model_1`	369-meric （369）	Excluded	—	—
	Exclusion reason： Auxiliary symmetry representation; not a complete or representative biological assembly.

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4. Crystallography and Experiment 4. Crystallography & Experiment

▶

5. Entities and Polymers Entities & Polymers (3)

Entity 1 Entity 1 polymer

Description description	Major capsid protein
Molecular weight formula_weight	56074.2 kDa
Source method src_method	nat
Copy count entity_count	186

Polymer Polymer

Polymer type type	polypeptide(L)
Chain IDs strand_id	;aa,ab,ac,ad,ae,af,ag,ah,ai,aj,ak,al,am,an,ao,ap,aq,ar,as,at,au,av,aw,ax,ay,az,ba,bb,bc,bd,be,bf,bg,bh,bi,bj,bk,bl,bm,bn,bo,bp,bq,br,bs,bt,bu,bv,bw,bx,by,bz,ca,cb,cc,cd,ce,cf,cg,ch,ci,cj,ck,cl,cm,cn,co,cp,cq,cr,cs,ct,cu,cv,cw,cx,cy,cz,da,db,dc,dd,de,df,dg,dh,di,dj,dk,dl,dm,dn,do,dp,dq,dr,ds,dt,du,dv,dw,dx,dy,dz,ea,eb,ec,ed,ee,ef,eg,eh,ei,ej,ek,el,em,en,eo,ep,eq,er,es,et,eu,ev,ew,ex,ey,ez,fa,fb,fc,fd,fe,ff,fg,fh,fi,fj,fk,fl,fm,fn,fo,fp,fq,fr,fs,ft,fu,fv,fw,fx,fy,fz,ga,gb,gc,gd,ge,gf,gg,gh,gi,gj,gk,gl,gm,gn,go,gp,gq,gr,gs,gt,gu,gv,gw,gx,gy,gz,ha,hb,hc,hd ;
Atom count atom_count	781038

MTIKTKAELLNKWKPLLEGEGLPEIANSKQAIIAKIFENQEKDFQTAPEYKDEKIAQAFGSFLTEAEIGGDHGYNATNIAAGQTSGAVTQIGPAVMGMVRRAIPNLIAFDICGVQPMNSPTGQVFALRAVYGKDPVAAGAKEAFHPMYGPDAMFSGQGAAKKFPALAASTQTTVGDIYTHFFQETGTVYLQASVQVTIDAGATDAAKLDAEIKKQMEAGALVEIAEGMATSIAELQEGFNGSTDNPWNEMGFRIDKQVIEAKSRQLKAAYSIELAQDLRAVHGMDADAELSGILATEIMLEINREVVDWINYSAQVGKSGMTLTPGSKAGVFDFQDPIDIRGARWAGESFKALLFQIDKEAVEIARQTGRGEGNFIIASRNVVNVLASVDTGISYAAQGLATGFSTDTTKSVFAGVLGGKYRVYIDQYAKQDYFTVGYKGPNEMDAGIYYAPYVALTPLRGSDPKNFQPVMGFKTRYGIGINPFAESAAQAPASRIQSGMPSILNSLGKNAYFRRVYVKGI

Entity 2 Entity 2 polymer

Description description	Capsid vertex protein
Molecular weight formula_weight	47039.0 kDa
Source method src_method	nat
Copy count entity_count	11

Polymer Polymer

Polymer type type	polypeptide(L)
Chain IDs strand_id	he,hf,hg,hh,hi,hj,hk,hl,hm,hn,ho

MAKINELLRESTTTNSNSIGRPNLVALTRATTKLIYSDIVATQRTNQPVAAFYGIKYLNPDNEFTFKTGATYAGEAGYVDREQITELTEESKLTLNKGDLFKYNNIVYKVLEDTPFATIEESDLELALQIAIVLLKVRLFSDAASTSKFESSDSEIADARFQINKWQTAVKSRKLKTGITVELAQDLEANGFDAPNFLEDLLATEMADEINKDILQSLITVSKRYKVTGITDSGFIDLSYASAPEAGRSLYRMVCEMVSHIQKESTYTATFCVASARAAAILAASGWLKHKPEDDKYLSQNAYGFLANGLPLYCDTNSPLDYVIVGVVENIGEKEIVGSIFYAPYTEGLDLDDPEHVGAFKVVVDPESLQPSIGLLVRYALSANPYTVAKDEKEARIIDGGDMDKMAGRSDLSVLLGVKLPKIIIDE

Entity 3 Entity 3 polymer

Description description	Small outer capsid protein
Molecular weight formula_weight	9085.1 kDa
Source method src_method	nat
Copy count entity_count	172

Polymer Polymer

Polymer type type

polypeptide(L)

Chain IDs strand_id

;hp,hq,hr,hs,ht,hu,hv,hw,hx,hy,hz,ia,ib,ic,id,ie,if,ig,ih,ii,ij,ik,il,im,in,io,ip,iq,ir,is,it,iu,iv,iw,ix,iy,iz,ja,jb,jc,jd,je,jf,jg,jh,ji,jj,jk,jl,jm,jn,jo,jp,jq,jr,js,jt,ju,jv,jw,jx,jy,jz,ka,kb,kc,kd,ke,kf,kg,kh,ki,kj,kk,kl,km,kn,ko,kp,kq,kr,ks,kt,ku,kv,kw,kx,ky,kz,la,lb,lc,ld,le,lf,lg,lh,li,lj,lk,ll,lm,ln,lo,lp,lq,lr,ls,lt,lu,lv,lw,lx,ly,lz,ma,mb,mc,md,me,mf,mg,mh,mi,mj,mk,ml,mm,mn,mo,mp,mq,ms,mt,mu,mv,mw,mx,my,mz,na,nb,nc,nd,ne,nf,ng,nh,ni,nj,nk,nl,nm,nn,no,np,nq,ns,nt,nu,nv,nw,nx,ny,nz,oa,ob,oc,od,oe,of,og ;

MASARGYVNIKTFEQKLDGNKKIEGKEVSVAFPLYSDVHKISGAHYQTFPSEKAAYSTVYEENQRTEWIAANEDLWKVTG

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Unit-cell length a length_a	1.000 Å
Unit-cell length b length_b	1.000 Å
Unit-cell length c length_c	1.000 Å
Unit-cell angle α angle_alpha	90.00 °
Unit-cell angle β angle_beta	90.00 °
Unit-cell angle γ angle_gamma	90.00 °
Molecules per unit cell Z z_pdb	—

Space group space_group	P 1
Space-group number int_tables_number	1
Crystal system crystal_system	—

Resolution resolution	3.40 Å
Resolution测定Method resolution_method	—
颗粒数 num_particles	53608

The expanded head structure of phage T4

1. Protein Identity and Related Structures Protein Identity & Related Structures

Major capsid protein

State in the Current Structure

Other States of the Same Protein in the Database

Capsid vertex protein

State in the Current Structure

Other States of the Same Protein in the Database

Small outer capsid protein

State in the Current Structure

Other States of the Same Protein in the Database

2. Structure Basics 2. Structure Basics

3. Official assembly/model SAXS Official SAXS Profiles

7vs5__assembly_1__model_1

7vs5__assembly_1__model_1 | I(q)

7vs5__assembly_1__model_1 | P(r) · Pending

4. Crystallography and Experiment 4. Crystallography & Experiment

Unit cell Unit Cell

Symmetry Symmetry

冷冻电镜 EM 3D

5. Entities and Polymers Entities & Polymers (3)

Entity 1 Entity 1 polymer

Polymer Polymer

Entity 2 Entity 2 polymer

Polymer Polymer

Entity 3 Entity 3 polymer

Polymer Polymer

7. Citations (1)

The expanded head structure of phage T4

1. Protein Identity and Related Structures Protein Identity & Related Structures

Major capsid protein

State in the Current Structure

Other States of the Same Protein in the Database

Monomer

Homodimer

Homotetramer

Other homooligomers

Heteromeric or nucleic-acid complex

Capsid vertex protein

State in the Current Structure

Other States of the Same Protein in the Database

Monomer

Homodimer

Homotetramer

Other homooligomers

Heteromeric or nucleic-acid complex

Small outer capsid protein

State in the Current Structure

Other States of the Same Protein in the Database

Monomer

Homodimer

Homotetramer

Other homooligomers

Heteromeric or nucleic-acid complex

2. Structure Basics 2. Structure Basics

3. Official assembly/model SAXS Official SAXS Profiles

7vs5__assembly_1__model_1

7vs5__assembly_1__model_1 | I(q)

7vs5__assembly_1__model_1 | P(r) · Pending

4. Crystallography and Experiment 4. Crystallography & Experiment

Unit cell Unit Cell

Symmetry Symmetry

冷冻电镜 EM 3D

5. Entities and Polymers Entities & Polymers (3)

Entity 1 Entity 1 polymer

Polymer Polymer

Entity 2 Entity 2 polymer

Polymer Polymer

Entity 3 Entity 3 polymer

Polymer Polymer

7. Citations (1)