7wt0

human glyoxalase I (with C-ter His tag) in complex with TLSC702

Method: X-RAY DIFFRACTION Dmax: 79.7 Å Quality: GOOD

1. Protein Identity and Related Structures Protein Identity & Related Structures

Lactoylglutathione lyase

Homo sapiens

UniProt Q04760

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein homooligomer Homooligomer Protein × 2 PDB declaration: dimeric(2) Consistent with protein copy count Chain A; UniProt 1–184 Chain B; UniProt 1–184 Not recorded ZN ZINC ION × 2 5ZO (~{E})-3-(1,3-benzothiazol-2-yl)-4-(4-methoxyphenyl)but-3-enoic acid × 2 X-RAY DIFFRACTION X-ray crystallization conditions:VAPOR DIFFUSION, SITTING DROP;293 K;0.2 M MgCl2, 0.1 M Bis-Tris, 25% PEG3350 Resolution 2.00 Å R-free 0.222

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

15 other PDB entries and 20 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name LGUL_HUMAN
Isoform
PDB entities 1
Chains and sequence ranges Author chain A; PDBConstruct 1–184; UniProt 1–184 Author chain B; PDBConstruct 1–184; UniProt 1–184

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

SAXS scattering curve SAXS Profile

SAXS profile for 7wt0

P(r) Distance Distribution P(r) Distribution

P(r) distribution for 7wt0
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2. Structure Basics 2. Structure Basics

Entry ID entry_id7wt0
Deposition date deposition_date2022-02-03
Structure title titlehuman glyoxalase I (with C-ter His tag) in complex with TLSC702
Keywords keywordsglyoxalase I, zinc metalloenzyme, LYASE; LYASE
Experimental Method methodX-RAY DIFFRACTION

3. SAXS Parameters (CRYSOL theoretical calculation) 3. SAXS Parameters (CRYSOL)

Radius of gyration Rg (Guinier) rg_guinier21.62
Radius of gyration Rg (electron density) rg_electron20.39
Forward intensity I(0) i029971100.00
Molecular weight molecular_weight42270.0 kDa
Excluded volume excluded_volume52915 ų
Envelope volume envelope_volume62591 ų
Hydration-shell volume shell_volume24640 ų
Envelope diameter envelope_diameter82.1
Shell Rg shell_rg28.01
Envelope Rg envelope_rg21.16
Shape Rg shape_rg20.38
Total Rg total_rg21.39
Total atoms total_atoms2963
Residues n_residues368
Spherical-harmonic order n_harmonics20
q range q_range— – 0.5000 −1
Data points n_points101
Shell type shell_typedirectional
Solvent electron density solvent_density0.3340 e/ų
Shell contrast contrast_shell0.0300 e/ų
CRYSOL version crysol_version4.1.3

4. P(r) Distance Distribution (GNOM inversion) 4. P(r) Analysis (GNOM)

Maximum dimension Dmax dmax79.7
Rg (real space) rg_real21.49
Rg uncertainty (real space) rg_real_error0.68
I(0) (real space) i0_real2.9970e+07
I(0) uncertainty (real space) i0_real_error4.1420e+05
Rg (reciprocal space) rg_reciprocal21.52
I(0) (reciprocal space) i0_reciprocal29970000.0000
Solution quality estimate total_estimate0.8207
Solution quality rating solution_quality GOOD a GOOD solution
P(r) peaks n_peaks2
Primary peak position r_peak_primary28.1
Skewness Skewness skewness0.236
Kurtosis Kurtosis kurtosis-0.170
Angular range angular_range— – 0.3700 −1
Current regularization parameter α current_alpha0.0000
Highest regularization parameter α highest_alpha9379000.0000
Real-space data points n_real_points69
GNOM version gnom_version4.1.3
Quality Criteria quality_criteria AN1: 0.000; Oscil: 0.564; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.973; Smooth: 0.999

5. Crystallography and Experiment 5. Crystallography & Experiment

6. Entities and Polymers Entities & Polymers (4)

8. Citations (1)

9. Files and Curves (10)