1bh5

HUMAN GLYOXALASE I Q33E, E172Q DOUBLE MUTANT

Method: X-RAY DIFFRACTION Dmax: 117.1 Å Quality: GOOD

1. Protein Identity and Related Structures Protein Identity & Related Structures

LACTOYLGLUTATHIONE LYASE

Homo sapiens

UniProt Q04760

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein homooligomer Homooligomer Protein × 2 PDB declaration: dimeric(2) Consistent with protein copy count Chain A; UniProt 1–183 Chain B; UniProt 1–183 Mutation:Q33E, E172Q ZN ZINC ION × 2 GTX S-HEXYLGLUTATHIONE × 2 X-RAY DIFFRACTION X-ray crystallization conditions:pH 5.8;PROTEIN WAS CRYSTALLISED FROM PEG 2000 MONOMETHLY ETHER 50 MM MES PH 5.8, 0.1M NACL Resolution 2.20 Å R-free 0.250
2 Protein homooligomer Homooligomer Protein × 2 PDB declaration: dimeric(2) Consistent with protein copy count Chain C; UniProt 1–183 Chain D; UniProt 1–183 Mutation:Q33E, E172Q ZN ZINC ION × 2 GTX S-HEXYLGLUTATHIONE × 2 X-RAY DIFFRACTION X-ray crystallization conditions:pH 5.8;PROTEIN WAS CRYSTALLISED FROM PEG 2000 MONOMETHLY ETHER 50 MM MES PH 5.8, 0.1M NACL Resolution 2.20 Å R-free 0.250

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

15 other PDB entries and 19 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name LGUL_HUMAN
Isoform
PDB entities 1
Chains and sequence ranges Author chain A; PDBConstruct 1–183; UniProt 1–183 Author chain B; PDBConstruct 1–183; UniProt 1–183 Author chain C; PDBConstruct 1–183; UniProt 1–183 Author chain D; PDBConstruct 1–183; UniProt 1–183

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

SAXS scattering curve SAXS Profile

SAXS profile for 1bh5

P(r) Distance Distribution P(r) Distribution

P(r) distribution for 1bh5
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2. Structure Basics 2. Structure Basics

Entry ID entry_id1bh5
Deposition date deposition_date1998-06-13
Structure title titleHUMAN GLYOXALASE I Q33E, E172Q DOUBLE MUTANT
Keywords keywordsLYASE, LACTOYLGLUTATHIONE LYASE, GLYOXALASE I; LYASE
Experimental Method methodX-RAY DIFFRACTION

3. SAXS Parameters (CRYSOL theoretical calculation) 3. SAXS Parameters (CRYSOL)

Radius of gyration Rg (Guinier) rg_guinier31.42
Radius of gyration Rg (electron density) rg_electron31.02
Forward intensity I(0) i0108890000.00
Molecular weight molecular_weight83014.0 kDa
Excluded volume excluded_volume103860 ų
Envelope volume envelope_volume129980 ų
Hydration-shell volume shell_volume35741 ų
Envelope diameter envelope_diameter119.4
Shell Rg shell_rg37.12
Envelope Rg envelope_rg31.28
Shape Rg shape_rg31.02
Total Rg total_rg31.56
Total atoms total_atoms5810
Residues n_residues718
Spherical-harmonic order n_harmonics20
q range q_range— – 0.5000 −1
Data points n_points101
Shell type shell_typedirectional
Solvent electron density solvent_density0.3340 e/ų
Shell contrast contrast_shell0.0300 e/ų
CRYSOL version crysol_version4.1.3

4. P(r) Distance Distribution (GNOM inversion) 4. P(r) Analysis (GNOM)

Maximum dimension Dmax dmax117.1
Rg (real space) rg_real31.60
Rg uncertainty (real space) rg_real_error1.19
I(0) (real space) i0_real1.0890e+08
I(0) uncertainty (real space) i0_real_error1.6750e+06
Rg (reciprocal space) rg_reciprocal31.52
I(0) (reciprocal space) i0_reciprocal108900000.0000
Solution quality estimate total_estimate0.8069
Solution quality rating solution_quality GOOD a GOOD solution
P(r) peaks n_peaks1
Primary peak position r_peak_primary30.4
Skewness Skewness skewness0.475
Kurtosis Kurtosis kurtosis-0.377
Angular range angular_range— – 0.2500 −1
Current regularization parameter α current_alpha0.0000
Highest regularization parameter α highest_alpha40010000.0000
Real-space data points n_real_points51
GNOM version gnom_version4.1.3
Quality Criteria quality_criteria AN1: 0.000; Oscil: 0.562; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.800; Smooth: 0.998

5. Crystallography and Experiment 5. Crystallography & Experiment

6. Entities and Polymers Entities & Polymers (4)

7. Fold Classification (SCOP + CATH) 8 domains

SCOP 2.08 (4 domains)

Domain ID domain_idd1bh5a_
Class classd — Alpha and beta proteins (a+b)
Fold Fold foldd.32 — Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
Superfamily Superfamily superfamilyd.32.1 — Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
Family Family familyd.32.1.1 — Glyoxalase I (lactoylglutathione lyase)
Domain ID domain_idd1bh5b_
Class classd — Alpha and beta proteins (a+b)
Fold Fold foldd.32 — Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
Superfamily Superfamily superfamilyd.32.1 — Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
Family Family familyd.32.1.1 — Glyoxalase I (lactoylglutathione lyase)
Domain ID domain_idd1bh5c_
Class classd — Alpha and beta proteins (a+b)
Fold Fold foldd.32 — Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
Superfamily Superfamily superfamilyd.32.1 — Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
Family Family familyd.32.1.1 — Glyoxalase I (lactoylglutathione lyase)
Domain ID domain_idd1bh5d_
Class classd — Alpha and beta proteins (a+b)
Fold Fold foldd.32 — Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
Superfamily Superfamily superfamilyd.32.1 — Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
Family Family familyd.32.1.1 — Glyoxalase I (lactoylglutathione lyase)

CATH v4.4 (4 domains)

Domain ID domain_id1bh5A00
Class class3 — Alpha Beta
Architecture architecture10 — Roll
Topology topology180 — 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1
Homologous superfamily homologous superfamily10 — 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1
Domain ID domain_id1bh5B00
Class class3 — Alpha Beta
Architecture architecture10 — Roll
Topology topology180 — 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1
Homologous superfamily homologous superfamily10 — 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1
Domain ID domain_id1bh5C00
Class class3 — Alpha Beta
Architecture architecture10 — Roll
Topology topology180 — 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1
Homologous superfamily homologous superfamily10 — 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1
Domain ID domain_id1bh5D00
Class class3 — Alpha Beta
Architecture architecture10 — Roll
Topology topology180 — 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1
Homologous superfamily homologous superfamily10 — 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1

8. Citations (1)

9. Files and Curves (10)