7wt2

human glyoxalase I in complex with TLSC702

Method: X-RAY DIFFRACTION Dmax: 75.2 Å Quality: REASONABLE

1. Protein Identity and Related Structures Protein Identity & Related Structures

Lactoylglutathione lyase

Homo sapiens

UniProt Q04760

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein homooligomer Homooligomer Protein × 2 PDB declaration: dimeric(2) Consistent with protein copy count Chain A; UniProt 1–184 Chain B; UniProt 1–184 Not recorded ZN ZINC ION × 2 5ZO (~{E})-3-(1,3-benzothiazol-2-yl)-4-(4-methoxyphenyl)but-3-enoic acid × 2 X-RAY DIFFRACTION X-ray crystallization conditions:VAPOR DIFFUSION, SITTING DROP;293 K;0.2 M NaCl, 0.1 M Bis-Tris, 25% PEG3350 Resolution 2.00 Å R-free 0.228

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

15 other PDB entries and 20 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name LGUL_HUMAN
Isoform
PDB entities 1
Chains and sequence ranges Author chain A; PDBConstruct 1–184; UniProt 1–184 Author chain B; PDBConstruct 1–184; UniProt 1–184

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

SAXS scattering curve SAXS Profile

SAXS profile for 7wt2

P(r) Distance Distribution P(r) Distribution

P(r) distribution for 7wt2
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2. Structure Basics 2. Structure Basics

Entry ID entry_id7wt2
Deposition date deposition_date2022-02-03
Structure title titlehuman glyoxalase I in complex with TLSC702
Keywords keywordsglyoxalase I, zinc metalloenzyme, LYASE; LYASE
Experimental Method methodX-RAY DIFFRACTION

3. SAXS Parameters (CRYSOL theoretical calculation) 3. SAXS Parameters (CRYSOL)

Radius of gyration Rg (Guinier) rg_guinier21.52
Radius of gyration Rg (electron density) rg_electron20.31
Forward intensity I(0) i029700000.00
Molecular weight molecular_weight42063.0 kDa
Excluded volume excluded_volume52633 ų
Envelope volume envelope_volume62010 ų
Hydration-shell volume shell_volume24512 ų
Envelope diameter envelope_diameter83.1
Shell Rg shell_rg27.90
Envelope Rg envelope_rg21.09
Shape Rg shape_rg20.30
Total Rg total_rg21.30
Total atoms total_atoms2948
Residues n_residues366
Spherical-harmonic order n_harmonics20
q range q_range— – 0.5000 −1
Data points n_points101
Shell type shell_typedirectional
Solvent electron density solvent_density0.3340 e/ų
Shell contrast contrast_shell0.0300 e/ų
CRYSOL version crysol_version4.1.3

4. P(r) Distance Distribution (GNOM inversion) 4. P(r) Analysis (GNOM)

Maximum dimension Dmax dmax75.2
Rg (real space) rg_real21.40
Rg uncertainty (real space) rg_real_error0.53
I(0) (real space) i0_real2.9700e+07
I(0) uncertainty (real space) i0_real_error4.1210e+05
Rg (reciprocal space) rg_reciprocal21.43
I(0) (reciprocal space) i0_reciprocal29700000.0000
Solution quality estimate total_estimate0.6028
Solution quality rating solution_quality REASONABLE a REASONABLE solution
P(r) peaks n_peaks3
Primary peak position r_peak_primary27.6
Skewness Skewness skewness0.242
Kurtosis Kurtosis kurtosis-0.152
Angular range angular_range— – 0.3700 −1
Current regularization parameter α current_alpha0.0000
Highest regularization parameter α highest_alpha8758000.0000
Real-space data points n_real_points69
GNOM version gnom_version4.1.3
Quality Criteria quality_criteria AN1: 0.000; Oscil: 0.665; Stabil: 0.999; Sysdev: 0.281; Positv: 1.000; Valcen: 0.996; Smooth: 0.000

5. Crystallography and Experiment 5. Crystallography & Experiment

6. Entities and Polymers Entities & Polymers (4)

8. Citations (1)

9. Files and Curves (10)