8a3t

S. cerevisiae APC/C-Cdh1 complex

Method: ELECTRON MICROSCOPY

1. Protein Identity and Related Structures Protein Identity & Related Structures

Anaphase-promoting complex subunit CDC27

Saccharomyces cerevisiae

UniProt P38042

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 19 Anaphase-promoting complex subunit CDC16 × 2 (P09798) Anaphase-promoting complex subunit CDC26 × 2 (P14724) Anaphase-promoting complex subunit 9 × 1 (Q12107) Anaphase-promoting complex subunit DOC1 × 1 (P53068) CDH1 isoform 1 × 1 (A0A6A5PYD7) HSL1 isoform 1 × 1 (A0A8H4BYV4) Anaphase-promoting complex subunit 1 × 1 (P53886) Anaphase-promoting complex subunit 5 × 1 (Q08683) Anaphase-promoting complex subunit CDC23 × 2 (P16522) Anaphase-promoting complex subunit SWM1 × 1 (Q12379) Anaphase-promoting complex subunit MND2 × 1 (P40577) Anaphase-promoting complex subunit 4 × 1 (Q04601) Anaphase-promoting complex subunit 2 × 1 (Q12440) Anaphase-promoting complex subunit 11 × 1 (Q12157) ZINC ION × 3 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name CDC27_YEAST
Isoform
PDB entities 1
Chains and sequence ranges Author chain F; PDBConstruct 1–758; UniProt 1–758 Author chain H; PDBConstruct 1–758; UniProt 1–758

Anaphase-promoting complex subunit CDC16

Saccharomyces cerevisiae

UniProt P09798

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 19 Anaphase-promoting complex subunit CDC27 × 2 (P38042) Anaphase-promoting complex subunit CDC26 × 2 (P14724) Anaphase-promoting complex subunit 9 × 1 (Q12107) Anaphase-promoting complex subunit DOC1 × 1 (P53068) CDH1 isoform 1 × 1 (A0A6A5PYD7) HSL1 isoform 1 × 1 (A0A8H4BYV4) Anaphase-promoting complex subunit 1 × 1 (P53886) Anaphase-promoting complex subunit 5 × 1 (Q08683) Anaphase-promoting complex subunit CDC23 × 2 (P16522) Anaphase-promoting complex subunit SWM1 × 1 (Q12379) Anaphase-promoting complex subunit MND2 × 1 (P40577) Anaphase-promoting complex subunit 4 × 1 (Q04601) Anaphase-promoting complex subunit 2 × 1 (Q12440) Anaphase-promoting complex subunit 11 × 1 (Q12157) ZINC ION × 3 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name CDC16_YEAST
Isoform
PDB entities 2
Chains and sequence ranges Author chain J; PDBConstruct 1–840; UniProt 1–840 Author chain K; PDBConstruct 1–840; UniProt 1–840

Anaphase-promoting complex subunit CDC26

Saccharomyces cerevisiae

UniProt P14724

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 19 Anaphase-promoting complex subunit CDC27 × 2 (P38042) Anaphase-promoting complex subunit CDC16 × 2 (P09798) Anaphase-promoting complex subunit 9 × 1 (Q12107) Anaphase-promoting complex subunit DOC1 × 1 (P53068) CDH1 isoform 1 × 1 (A0A6A5PYD7) HSL1 isoform 1 × 1 (A0A8H4BYV4) Anaphase-promoting complex subunit 1 × 1 (P53886) Anaphase-promoting complex subunit 5 × 1 (Q08683) Anaphase-promoting complex subunit CDC23 × 2 (P16522) Anaphase-promoting complex subunit SWM1 × 1 (Q12379) Anaphase-promoting complex subunit MND2 × 1 (P40577) Anaphase-promoting complex subunit 4 × 1 (Q04601) Anaphase-promoting complex subunit 2 × 1 (Q12440) Anaphase-promoting complex subunit 11 × 1 (Q12157) ZINC ION × 3 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name CDC26_YEAST
Isoform
PDB entities 3
Chains and sequence ranges Author chain G; PDBConstruct 1–124; UniProt 1–124 Author chain W; PDBConstruct 1–124; UniProt 1–124

Anaphase-promoting complex subunit 9

Saccharomyces cerevisiae

UniProt Q12107

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 19 Anaphase-promoting complex subunit CDC27 × 2 (P38042) Anaphase-promoting complex subunit CDC16 × 2 (P09798) Anaphase-promoting complex subunit CDC26 × 2 (P14724) Anaphase-promoting complex subunit DOC1 × 1 (P53068) CDH1 isoform 1 × 1 (A0A6A5PYD7) HSL1 isoform 1 × 1 (A0A8H4BYV4) Anaphase-promoting complex subunit 1 × 1 (P53886) Anaphase-promoting complex subunit 5 × 1 (Q08683) Anaphase-promoting complex subunit CDC23 × 2 (P16522) Anaphase-promoting complex subunit SWM1 × 1 (Q12379) Anaphase-promoting complex subunit MND2 × 1 (P40577) Anaphase-promoting complex subunit 4 × 1 (Q04601) Anaphase-promoting complex subunit 2 × 1 (Q12440) Anaphase-promoting complex subunit 11 × 1 (Q12157) ZINC ION × 3 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name APC9_YEAST
Isoform
PDB entities 4
Chains and sequence ranges Author chain E; PDBConstruct 1–265; UniProt 1–265

Anaphase-promoting complex subunit DOC1

Saccharomyces cerevisiae

UniProt P53068

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 19 Anaphase-promoting complex subunit CDC27 × 2 (P38042) Anaphase-promoting complex subunit CDC16 × 2 (P09798) Anaphase-promoting complex subunit CDC26 × 2 (P14724) Anaphase-promoting complex subunit 9 × 1 (Q12107) CDH1 isoform 1 × 1 (A0A6A5PYD7) HSL1 isoform 1 × 1 (A0A8H4BYV4) Anaphase-promoting complex subunit 1 × 1 (P53886) Anaphase-promoting complex subunit 5 × 1 (Q08683) Anaphase-promoting complex subunit CDC23 × 2 (P16522) Anaphase-promoting complex subunit SWM1 × 1 (Q12379) Anaphase-promoting complex subunit MND2 × 1 (P40577) Anaphase-promoting complex subunit 4 × 1 (Q04601) Anaphase-promoting complex subunit 2 × 1 (Q12440) Anaphase-promoting complex subunit 11 × 1 (Q12157) ZINC ION × 3 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name APC10_YEAST
Isoform
PDB entities 5
Chains and sequence ranges Author chain A; PDBConstruct 1–250; UniProt 1–250

CDH1 isoform 1

Saccharomyces cerevisiae

UniProt A0A6A5PYD7

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 19 Anaphase-promoting complex subunit CDC27 × 2 (P38042) Anaphase-promoting complex subunit CDC16 × 2 (P09798) Anaphase-promoting complex subunit CDC26 × 2 (P14724) Anaphase-promoting complex subunit 9 × 1 (Q12107) Anaphase-promoting complex subunit DOC1 × 1 (P53068) HSL1 isoform 1 × 1 (A0A8H4BYV4) Anaphase-promoting complex subunit 1 × 1 (P53886) Anaphase-promoting complex subunit 5 × 1 (Q08683) Anaphase-promoting complex subunit CDC23 × 2 (P16522) Anaphase-promoting complex subunit SWM1 × 1 (Q12379) Anaphase-promoting complex subunit MND2 × 1 (P40577) Anaphase-promoting complex subunit 4 × 1 (Q04601) Anaphase-promoting complex subunit 2 × 1 (Q12440) Anaphase-promoting complex subunit 11 × 1 (Q12157) ZINC ION × 3 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name A0A6A5PYD7_YEASX
Isoform
PDB entities 6
Chains and sequence ranges Author chain B; PDBConstruct 1–566; UniProt 1–566

HSL1 isoform 1

Saccharomyces cerevisiae

UniProt A0A8H4BYV4

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 19 Anaphase-promoting complex subunit CDC27 × 2 (P38042) Anaphase-promoting complex subunit CDC16 × 2 (P09798) Anaphase-promoting complex subunit CDC26 × 2 (P14724) Anaphase-promoting complex subunit 9 × 1 (Q12107) Anaphase-promoting complex subunit DOC1 × 1 (P53068) CDH1 isoform 1 × 1 (A0A6A5PYD7) Anaphase-promoting complex subunit 1 × 1 (P53886) Anaphase-promoting complex subunit 5 × 1 (Q08683) Anaphase-promoting complex subunit CDC23 × 2 (P16522) Anaphase-promoting complex subunit SWM1 × 1 (Q12379) Anaphase-promoting complex subunit MND2 × 1 (P40577) Anaphase-promoting complex subunit 4 × 1 (Q04601) Anaphase-promoting complex subunit 2 × 1 (Q12440) Anaphase-promoting complex subunit 11 × 1 (Q12157) ZINC ION × 3 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name A0A8H4BYV4_YEASX
Isoform
PDB entities 7
Chains and sequence ranges Author chain S; PDBConstruct 1–1518; UniProt 1–1518

Anaphase-promoting complex subunit 1

Saccharomyces cerevisiae

UniProt P53886

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 19 Anaphase-promoting complex subunit CDC27 × 2 (P38042) Anaphase-promoting complex subunit CDC16 × 2 (P09798) Anaphase-promoting complex subunit CDC26 × 2 (P14724) Anaphase-promoting complex subunit 9 × 1 (Q12107) Anaphase-promoting complex subunit DOC1 × 1 (P53068) CDH1 isoform 1 × 1 (A0A6A5PYD7) HSL1 isoform 1 × 1 (A0A8H4BYV4) Anaphase-promoting complex subunit 5 × 1 (Q08683) Anaphase-promoting complex subunit CDC23 × 2 (P16522) Anaphase-promoting complex subunit SWM1 × 1 (Q12379) Anaphase-promoting complex subunit MND2 × 1 (P40577) Anaphase-promoting complex subunit 4 × 1 (Q04601) Anaphase-promoting complex subunit 2 × 1 (Q12440) Anaphase-promoting complex subunit 11 × 1 (Q12157) ZINC ION × 3 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name APC1_YEAST
Isoform
PDB entities 8
Chains and sequence ranges Author chain C; PDBConstruct 1–1748; UniProt 1–1748

Anaphase-promoting complex subunit 5

Saccharomyces cerevisiae

UniProt Q08683

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 19 Anaphase-promoting complex subunit CDC27 × 2 (P38042) Anaphase-promoting complex subunit CDC16 × 2 (P09798) Anaphase-promoting complex subunit CDC26 × 2 (P14724) Anaphase-promoting complex subunit 9 × 1 (Q12107) Anaphase-promoting complex subunit DOC1 × 1 (P53068) CDH1 isoform 1 × 1 (A0A6A5PYD7) HSL1 isoform 1 × 1 (A0A8H4BYV4) Anaphase-promoting complex subunit 1 × 1 (P53886) Anaphase-promoting complex subunit CDC23 × 2 (P16522) Anaphase-promoting complex subunit SWM1 × 1 (Q12379) Anaphase-promoting complex subunit MND2 × 1 (P40577) Anaphase-promoting complex subunit 4 × 1 (Q04601) Anaphase-promoting complex subunit 2 × 1 (Q12440) Anaphase-promoting complex subunit 11 × 1 (Q12157) ZINC ION × 3 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name APC5_YEAST
Isoform
PDB entities 9
Chains and sequence ranges Author chain O; PDBConstruct 1–685; UniProt 1–685

Anaphase-promoting complex subunit CDC23

Saccharomyces cerevisiae

UniProt P16522

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 19 Anaphase-promoting complex subunit CDC27 × 2 (P38042) Anaphase-promoting complex subunit CDC16 × 2 (P09798) Anaphase-promoting complex subunit CDC26 × 2 (P14724) Anaphase-promoting complex subunit 9 × 1 (Q12107) Anaphase-promoting complex subunit DOC1 × 1 (P53068) CDH1 isoform 1 × 1 (A0A6A5PYD7) HSL1 isoform 1 × 1 (A0A8H4BYV4) Anaphase-promoting complex subunit 1 × 1 (P53886) Anaphase-promoting complex subunit 5 × 1 (Q08683) Anaphase-promoting complex subunit SWM1 × 1 (Q12379) Anaphase-promoting complex subunit MND2 × 1 (P40577) Anaphase-promoting complex subunit 4 × 1 (Q04601) Anaphase-promoting complex subunit 2 × 1 (Q12440) Anaphase-promoting complex subunit 11 × 1 (Q12157) ZINC ION × 3 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name CDC23_YEAST
Isoform
PDB entities 10
Chains and sequence ranges Author chain D; PDBConstruct 1–626; UniProt 1–626 Author chain P; PDBConstruct 1–626; UniProt 1–626

Anaphase-promoting complex subunit SWM1

Saccharomyces cerevisiae

UniProt Q12379

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 19 Anaphase-promoting complex subunit CDC27 × 2 (P38042) Anaphase-promoting complex subunit CDC16 × 2 (P09798) Anaphase-promoting complex subunit CDC26 × 2 (P14724) Anaphase-promoting complex subunit 9 × 1 (Q12107) Anaphase-promoting complex subunit DOC1 × 1 (P53068) CDH1 isoform 1 × 1 (A0A6A5PYD7) HSL1 isoform 1 × 1 (A0A8H4BYV4) Anaphase-promoting complex subunit 1 × 1 (P53886) Anaphase-promoting complex subunit 5 × 1 (Q08683) Anaphase-promoting complex subunit CDC23 × 2 (P16522) Anaphase-promoting complex subunit MND2 × 1 (P40577) Anaphase-promoting complex subunit 4 × 1 (Q04601) Anaphase-promoting complex subunit 2 × 1 (Q12440) Anaphase-promoting complex subunit 11 × 1 (Q12157) ZINC ION × 3 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name SWM1_YEAST
Isoform
PDB entities 11
Chains and sequence ranges Author chain I; PDBConstruct 1–170; UniProt 1–170

Anaphase-promoting complex subunit MND2

Saccharomyces cerevisiae

UniProt P40577

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 19 Anaphase-promoting complex subunit CDC27 × 2 (P38042) Anaphase-promoting complex subunit CDC16 × 2 (P09798) Anaphase-promoting complex subunit CDC26 × 2 (P14724) Anaphase-promoting complex subunit 9 × 1 (Q12107) Anaphase-promoting complex subunit DOC1 × 1 (P53068) CDH1 isoform 1 × 1 (A0A6A5PYD7) HSL1 isoform 1 × 1 (A0A8H4BYV4) Anaphase-promoting complex subunit 1 × 1 (P53886) Anaphase-promoting complex subunit 5 × 1 (Q08683) Anaphase-promoting complex subunit CDC23 × 2 (P16522) Anaphase-promoting complex subunit SWM1 × 1 (Q12379) Anaphase-promoting complex subunit 4 × 1 (Q04601) Anaphase-promoting complex subunit 2 × 1 (Q12440) Anaphase-promoting complex subunit 11 × 1 (Q12157) ZINC ION × 3 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name MND2_YEAST
Isoform
PDB entities 12
Chains and sequence ranges Author chain N; PDBConstruct 1–368; UniProt 1–368

Anaphase-promoting complex subunit 4

Saccharomyces cerevisiae

UniProt Q04601

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 19 Anaphase-promoting complex subunit CDC27 × 2 (P38042) Anaphase-promoting complex subunit CDC16 × 2 (P09798) Anaphase-promoting complex subunit CDC26 × 2 (P14724) Anaphase-promoting complex subunit 9 × 1 (Q12107) Anaphase-promoting complex subunit DOC1 × 1 (P53068) CDH1 isoform 1 × 1 (A0A6A5PYD7) HSL1 isoform 1 × 1 (A0A8H4BYV4) Anaphase-promoting complex subunit 1 × 1 (P53886) Anaphase-promoting complex subunit 5 × 1 (Q08683) Anaphase-promoting complex subunit CDC23 × 2 (P16522) Anaphase-promoting complex subunit SWM1 × 1 (Q12379) Anaphase-promoting complex subunit MND2 × 1 (P40577) Anaphase-promoting complex subunit 2 × 1 (Q12440) Anaphase-promoting complex subunit 11 × 1 (Q12157) ZINC ION × 3 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name APC4_YEAST
Isoform
PDB entities 13
Chains and sequence ranges Author chain Q; PDBConstruct 1–652; UniProt 1–652

Anaphase-promoting complex subunit 2

Saccharomyces cerevisiae

UniProt Q12440

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 19 Anaphase-promoting complex subunit CDC27 × 2 (P38042) Anaphase-promoting complex subunit CDC16 × 2 (P09798) Anaphase-promoting complex subunit CDC26 × 2 (P14724) Anaphase-promoting complex subunit 9 × 1 (Q12107) Anaphase-promoting complex subunit DOC1 × 1 (P53068) CDH1 isoform 1 × 1 (A0A6A5PYD7) HSL1 isoform 1 × 1 (A0A8H4BYV4) Anaphase-promoting complex subunit 1 × 1 (P53886) Anaphase-promoting complex subunit 5 × 1 (Q08683) Anaphase-promoting complex subunit CDC23 × 2 (P16522) Anaphase-promoting complex subunit SWM1 × 1 (Q12379) Anaphase-promoting complex subunit MND2 × 1 (P40577) Anaphase-promoting complex subunit 4 × 1 (Q04601) Anaphase-promoting complex subunit 11 × 1 (Q12157) ZINC ION × 3 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name APC2_YEAST
Isoform
PDB entities 14
Chains and sequence ranges Author chain T; PDBConstruct 1–853; UniProt 1–853

Anaphase-promoting complex subunit 11

Saccharomyces cerevisiae

UniProt Q12157

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 19 Anaphase-promoting complex subunit CDC27 × 2 (P38042) Anaphase-promoting complex subunit CDC16 × 2 (P09798) Anaphase-promoting complex subunit CDC26 × 2 (P14724) Anaphase-promoting complex subunit 9 × 1 (Q12107) Anaphase-promoting complex subunit DOC1 × 1 (P53068) CDH1 isoform 1 × 1 (A0A6A5PYD7) HSL1 isoform 1 × 1 (A0A8H4BYV4) Anaphase-promoting complex subunit 1 × 1 (P53886) Anaphase-promoting complex subunit 5 × 1 (Q08683) Anaphase-promoting complex subunit CDC23 × 2 (P16522) Anaphase-promoting complex subunit SWM1 × 1 (Q12379) Anaphase-promoting complex subunit MND2 × 1 (P40577) Anaphase-promoting complex subunit 4 × 1 (Q04601) Anaphase-promoting complex subunit 2 × 1 (Q12440) ZINC ION × 3 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name APC11_YEAST
Isoform
PDB entities 15
Chains and sequence ranges Author chain U; PDBConstruct 1–165; UniProt 1–165

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

2. Structure Basics 2. Structure Basics

Entry ID entry_id8a3t
Deposition date deposition_date2022-06-09
Structure title titleS. cerevisiae APC/C-Cdh1 complex
Keywords keywordsAPC/C, ubiqutiniation, D-box, Cdh1, CELL CYCLE; CELL CYCLE
Experimental Method methodELECTRON MICROSCOPY

3. Official assembly/model SAXS Official SAXS Profiles

This page reads only the latest assembly calculations. Every curve maps to an explicit PDB entry, official biological assembly and coordinate model.

8a3t__assembly_1__model_1

Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

Download this curve (.dat)

8a3t__assembly_1__model_1 | I(q)

10-2 10-1 106 107 108 109 q (1/Angstrom) I(q)
100 plotted points; both axes use logarithmic scales.

8a3t__assembly_1__model_1 | P(r) · Pending

The new assembly/model P(r) has not been calculated yet This placeholder does not display legacy data r (Angstrom) P(r)
P(r) will be calculated and displayed separately for the same assembly/model.
Rg(Guinier)71.38 Å
Rg (electron density)71.21 Å
Total Rg71.31 Å
Atom count61351
Residues7661
Excluded volume1099700 ų
Maximum q0.500 Å⁻¹
Assembly Model Structure unit Oligomeric description Status CRYSOL Actions
1 1 8a3t__assembly_1__model_1 nonadecameric (19) Success 4.1.3-1-20251215 (887e7ef) View Download

4. Crystallography and Experiment 4. Crystallography & Experiment

5. Entities and Polymers Entities & Polymers (16)

6. Fold Classification (SCOP + CATH) 2 domains

CATH v4.4 (2 domains)

Domain ID domain_id8a3tA01
Class class2 — Mainly Beta
Architecture architecture60 — Sandwich
Topology topology120 — Jelly Rolls
Homologous superfamily homologous superfamily260 — Galactose-binding domain-like
Domain ID domain_id8a3tD01
Class class1 — Mainly Alpha
Architecture architecture25 — Alpha Horseshoe
Topology topology40 — Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat
Homologous superfamily homologous superfamily10 — Tetratricopeptide repeat domain

7. Citations (1)