8hcr

Cryo-EM structure of the Mycobacterium tuberculosis cytochrome bcc:aa3 supercomplex and a novel inhibitor targeting subunit cytochrome cI

Method: ELECTRON MICROSCOPY
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1. Protein Identity and Related Structures Protein Identity & Related Structures

Cytochrome bc1 complex Rieske iron-sulfur subunit

Mycobacterium tuberculosis variant bovis BCG

UniProt A0A045GW18

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 18 Cytochrome bc1 complex cytochrome b subunit × 2 (A0A0K2HYC0) Cytochrome bc1 complex cytochrome c subunit × 2 (P9WP35) CYTOCHROME AA3 SUBUNIT CtaC × 2 Probable cytochrome c oxidase subunit 1 × 2 (P9WP71) Probable cytochrome c oxidase subunit 3 × 2 (P9WP67) Cytochrome c oxidase polypeptide 4 × 2 (A0A0K2HXG0) CYTOCHROME AA3 SUBUNIT CtaJ × 2 DUF5130 domain-containing protein × 2 (A0A7U4BVZ0) FE2/S2 (INORGANIC) CLUSTER × 2 PROTOPORPHYRIN IX CONTAINING FE × 4 HEME C × 4 HEME-A × 4 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name A0A045GW18_MYCTX
Isoform —
PDB entities 1
Chains and sequence ranges Author chain A; PDBConstruct 1–429; UniProt 1–429 Author chain M; PDBConstruct 1–429; UniProt 1–429

Cytochrome bc1 complex cytochrome b subunit

Mycobacterium tuberculosis variant bovis BCG

UniProt A0A0K2HYC0

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 18 Cytochrome bc1 complex Rieske iron-sulfur subunit × 2 (A0A045GW18) Cytochrome bc1 complex cytochrome c subunit × 2 (P9WP35) CYTOCHROME AA3 SUBUNIT CtaC × 2 Probable cytochrome c oxidase subunit 1 × 2 (P9WP71) Probable cytochrome c oxidase subunit 3 × 2 (P9WP67) Cytochrome c oxidase polypeptide 4 × 2 (A0A0K2HXG0) CYTOCHROME AA3 SUBUNIT CtaJ × 2 DUF5130 domain-containing protein × 2 (A0A7U4BVZ0) FE2/S2 (INORGANIC) CLUSTER × 2 PROTOPORPHYRIN IX CONTAINING FE × 4 HEME C × 4 HEME-A × 4 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name A0A0K2HYC0_MYCBI
Isoform —
PDB entities 2
Chains and sequence ranges Author chain B; PDBConstruct 1–549; UniProt 1–549 Author chain N; PDBConstruct 1–549; UniProt 1–549

Cytochrome bc1 complex cytochrome c subunit

Mycobacterium tuberculosis variant bovis BCG

UniProt P9WP35

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 18 Cytochrome bc1 complex Rieske iron-sulfur subunit × 2 (A0A045GW18) Cytochrome bc1 complex cytochrome b subunit × 2 (A0A0K2HYC0) CYTOCHROME AA3 SUBUNIT CtaC × 2 Probable cytochrome c oxidase subunit 1 × 2 (P9WP71) Probable cytochrome c oxidase subunit 3 × 2 (P9WP67) Cytochrome c oxidase polypeptide 4 × 2 (A0A0K2HXG0) CYTOCHROME AA3 SUBUNIT CtaJ × 2 DUF5130 domain-containing protein × 2 (A0A7U4BVZ0) FE2/S2 (INORGANIC) CLUSTER × 2 PROTOPORPHYRIN IX CONTAINING FE × 4 HEME C × 4 HEME-A × 4 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name QCRC_MYCTU
Isoform —
PDB entities 3
Chains and sequence ranges Author chain C; PDBConstruct 1–280; UniProt 1–280 Author chain O; PDBConstruct 1–280; UniProt 1–280

Probable cytochrome c oxidase subunit 1

Mycobacterium tuberculosis variant bovis BCG

UniProt P9WP71

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 18 Cytochrome bc1 complex Rieske iron-sulfur subunit × 2 (A0A045GW18) Cytochrome bc1 complex cytochrome b subunit × 2 (A0A0K2HYC0) Cytochrome bc1 complex cytochrome c subunit × 2 (P9WP35) CYTOCHROME AA3 SUBUNIT CtaC × 2 Probable cytochrome c oxidase subunit 3 × 2 (P9WP67) Cytochrome c oxidase polypeptide 4 × 2 (A0A0K2HXG0) CYTOCHROME AA3 SUBUNIT CtaJ × 2 DUF5130 domain-containing protein × 2 (A0A7U4BVZ0) FE2/S2 (INORGANIC) CLUSTER × 2 PROTOPORPHYRIN IX CONTAINING FE × 4 HEME C × 4 HEME-A × 4 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name COX1_MYCTU
Isoform —
PDB entities 5
Chains and sequence ranges Author chain F; PDBConstruct 1–573; UniProt 1–573 Author chain R; PDBConstruct 1–573; UniProt 1–573

Probable cytochrome c oxidase subunit 3

Mycobacterium tuberculosis variant bovis BCG

UniProt P9WP67

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 18 Cytochrome bc1 complex Rieske iron-sulfur subunit × 2 (A0A045GW18) Cytochrome bc1 complex cytochrome b subunit × 2 (A0A0K2HYC0) Cytochrome bc1 complex cytochrome c subunit × 2 (P9WP35) CYTOCHROME AA3 SUBUNIT CtaC × 2 Probable cytochrome c oxidase subunit 1 × 2 (P9WP71) Cytochrome c oxidase polypeptide 4 × 2 (A0A0K2HXG0) CYTOCHROME AA3 SUBUNIT CtaJ × 2 DUF5130 domain-containing protein × 2 (A0A7U4BVZ0) FE2/S2 (INORGANIC) CLUSTER × 2 PROTOPORPHYRIN IX CONTAINING FE × 4 HEME C × 4 HEME-A × 4 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name COX3_MYCTU
Isoform —
PDB entities 6
Chains and sequence ranges Author chain G; PDBConstruct 1–203; UniProt 1–203 Author chain S; PDBConstruct 1–203; UniProt 1–203

Cytochrome c oxidase polypeptide 4

Mycobacterium tuberculosis variant bovis BCG

UniProt A0A0K2HXG0

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 18 Cytochrome bc1 complex Rieske iron-sulfur subunit × 2 (A0A045GW18) Cytochrome bc1 complex cytochrome b subunit × 2 (A0A0K2HYC0) Cytochrome bc1 complex cytochrome c subunit × 2 (P9WP35) CYTOCHROME AA3 SUBUNIT CtaC × 2 Probable cytochrome c oxidase subunit 1 × 2 (P9WP71) Probable cytochrome c oxidase subunit 3 × 2 (P9WP67) CYTOCHROME AA3 SUBUNIT CtaJ × 2 DUF5130 domain-containing protein × 2 (A0A7U4BVZ0) FE2/S2 (INORGANIC) CLUSTER × 2 PROTOPORPHYRIN IX CONTAINING FE × 4 HEME C × 4 HEME-A × 4 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name A0A0K2HXG0_MYCBI
Isoform —
PDB entities 7
Chains and sequence ranges Author chain H; PDBConstruct 1–139; UniProt 1–139 Author chain T; PDBConstruct 1–139; UniProt 1–139

DUF5130 domain-containing protein

Mycobacterium tuberculosis variant bovis BCG

UniProt A0A7U4BVZ0

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 18 Cytochrome bc1 complex Rieske iron-sulfur subunit × 2 (A0A045GW18) Cytochrome bc1 complex cytochrome b subunit × 2 (A0A0K2HYC0) Cytochrome bc1 complex cytochrome c subunit × 2 (P9WP35) CYTOCHROME AA3 SUBUNIT CtaC × 2 Probable cytochrome c oxidase subunit 1 × 2 (P9WP71) Probable cytochrome c oxidase subunit 3 × 2 (P9WP67) Cytochrome c oxidase polypeptide 4 × 2 (A0A0K2HXG0) CYTOCHROME AA3 SUBUNIT CtaJ × 2 FE2/S2 (INORGANIC) CLUSTER × 2 PROTOPORPHYRIN IX CONTAINING FE × 4 HEME C × 4 HEME-A × 4 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name A0A7U4BVZ0_MYCBI
Isoform —
PDB entities 9
Chains and sequence ranges Author chain J; PDBConstruct 1–155; UniProt 1–155 Author chain V; PDBConstruct 1–155; UniProt 1–155

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

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2. Structure Basics 2. Structure Basics

Entry ID entry_id8hcr
Deposition date deposition_date2022-11-02
Structure title titleCryo-EM structure of the Mycobacterium tuberculosis cytochrome bcc:aa3 supercomplex and a novel inhibitor targeting subunit cytochrome cI
Keywords keywordsCytochrome bcc:aa3 oxidase, Mycobacterium tuberculosis, OXIDOREDUCTASE; OXIDOREDUCTASE
Experimental Method methodELECTRON MICROSCOPY
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3. Official assembly/model SAXS Official SAXS Profiles

This page reads only the latest assembly calculations. Every curve maps to an explicit PDB entry, official biological assembly and coordinate model.

8hcr__assembly_1__model_1

Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

Download this curve (.dat)

8hcr__assembly_1__model_1 | I(q)

10-2 10-1 106 107 108 109 q (1/Angstrom) I(q)
100 plotted points; both axes use logarithmic scales.

8hcr__assembly_1__model_1 | P(r) · Pending

The new assembly/model P(r) has not been calculated yet This placeholder does not display legacy data r (Angstrom) P(r)
P(r) will be calculated and displayed separately for the same assembly/model.
Rg(Guinier)66.18 Å
Rg (electron density)66.84 Å
Total Rg66.65 Å
Atom count38845
Residues4961
Excluded volume701330 ų
Maximum q0.500 Å⁻¹
Assembly Model Structure unit Oligomeric description Status CRYSOL Actions
1 1 8hcr__assembly_1__model_1 octadecameric (18) Success 4.1.3-1-20251215 (887e7ef) View Download
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4. Crystallography and Experiment 4. Crystallography & Experiment

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5. Entities and Polymers Entities & Polymers (13)

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7. Citations (1)