8i5c

Crystal structure of a TCR in complex with HLA-A*11:01 bound to KRAS peptide (VVGAVGVGK)

Method: X-RAY DIFFRACTION
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1. Protein Identity and Related Structures Protein Identity & Related Structures

MHC class I antigen (Fragment)

Homo sapiens

UniProt U5YJJ6

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 5 Beta-2-microglobulin × 1 (P61769) peptide KRAS-G12V-9 × 1 TCR alpha chain × 1 TCR beta chain × 1 Consistent with protein count
10 Protein heterocomplex Heteromer Protein 5 Beta-2-microglobulin × 1 (P61769) peptide KRAS-G12V-9 × 1 TCR alpha chain × 1 TCR beta chain × 1 Consistent with protein count
2 Protein heterocomplex Heteromer Protein 5 Beta-2-microglobulin × 1 (P61769) peptide KRAS-G12V-9 × 1 TCR alpha chain × 1 TCR beta chain × 1 Consistent with protein count
3 Protein heterocomplex Heteromer Protein 5 Beta-2-microglobulin × 1 (P61769) peptide KRAS-G12V-9 × 1 TCR alpha chain × 1 TCR beta chain × 1 Consistent with protein count
4 Protein heterocomplex Heteromer Protein 5 Beta-2-microglobulin × 1 (P61769) peptide KRAS-G12V-9 × 1 TCR alpha chain × 1 TCR beta chain × 1 Consistent with protein count
5 Protein heterocomplex Heteromer Protein 5 Beta-2-microglobulin × 1 (P61769) peptide KRAS-G12V-9 × 1 TCR alpha chain × 1 TCR beta chain × 1 Consistent with protein count
6 Protein heterocomplex Heteromer Protein 5 Beta-2-microglobulin × 1 (P61769) peptide KRAS-G12V-9 × 1 TCR alpha chain × 1 TCR beta chain × 1 Consistent with protein count
7 Protein heterocomplex Heteromer Protein 5 Beta-2-microglobulin × 1 (P61769) peptide KRAS-G12V-9 × 1 TCR alpha chain × 1 TCR beta chain × 1 Consistent with protein count
8 Protein heterocomplex Heteromer Protein 5 Beta-2-microglobulin × 1 (P61769) peptide KRAS-G12V-9 × 1 TCR alpha chain × 1 TCR beta chain × 1 Consistent with protein count
9 Protein heterocomplex Heteromer Protein 5 Beta-2-microglobulin × 1 (P61769) peptide KRAS-G12V-9 × 1 TCR alpha chain × 1 TCR beta chain × 1 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name U5YJJ6_HUMAN
Isoform —
PDB entities 1
Chains and sequence ranges Author chain A; PDBConstruct 1–274; UniProt 25–298 Author chain F; PDBConstruct 1–274; UniProt 25–298 Author chain K; PDBConstruct 1–274; UniProt 25–298 Author chain P; PDBConstruct 1–274; UniProt 25–298 Author chain U; PDBConstruct 1–274; UniProt 25–298 Author chain Z; PDBConstruct 1–274; UniProt 25–298 Author chain e; PDBConstruct 1–274; UniProt 25–298 Author chain j; PDBConstruct 1–274; UniProt 25–298 Author chain o; PDBConstruct 1–274; UniProt 25–298 Author chain t; PDBConstruct 1–274; UniProt 25–298

Beta-2-microglobulin

Homo sapiens

UniProt P61769

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 5 MHC class I antigen (Fragment) × 1 (U5YJJ6) peptide KRAS-G12V-9 × 1 TCR alpha chain × 1 TCR beta chain × 1 Consistent with protein count
10 Protein heterocomplex Heteromer Protein 5 MHC class I antigen (Fragment) × 1 (U5YJJ6) peptide KRAS-G12V-9 × 1 TCR alpha chain × 1 TCR beta chain × 1 Consistent with protein count
2 Protein heterocomplex Heteromer Protein 5 MHC class I antigen (Fragment) × 1 (U5YJJ6) peptide KRAS-G12V-9 × 1 TCR alpha chain × 1 TCR beta chain × 1 Consistent with protein count
3 Protein heterocomplex Heteromer Protein 5 MHC class I antigen (Fragment) × 1 (U5YJJ6) peptide KRAS-G12V-9 × 1 TCR alpha chain × 1 TCR beta chain × 1 Consistent with protein count
4 Protein heterocomplex Heteromer Protein 5 MHC class I antigen (Fragment) × 1 (U5YJJ6) peptide KRAS-G12V-9 × 1 TCR alpha chain × 1 TCR beta chain × 1 Consistent with protein count
5 Protein heterocomplex Heteromer Protein 5 MHC class I antigen (Fragment) × 1 (U5YJJ6) peptide KRAS-G12V-9 × 1 TCR alpha chain × 1 TCR beta chain × 1 Consistent with protein count
6 Protein heterocomplex Heteromer Protein 5 MHC class I antigen (Fragment) × 1 (U5YJJ6) peptide KRAS-G12V-9 × 1 TCR alpha chain × 1 TCR beta chain × 1 Consistent with protein count
7 Protein heterocomplex Heteromer Protein 5 MHC class I antigen (Fragment) × 1 (U5YJJ6) peptide KRAS-G12V-9 × 1 TCR alpha chain × 1 TCR beta chain × 1 Consistent with protein count
8 Protein heterocomplex Heteromer Protein 5 MHC class I antigen (Fragment) × 1 (U5YJJ6) peptide KRAS-G12V-9 × 1 TCR alpha chain × 1 TCR beta chain × 1 Consistent with protein count
9 Protein heterocomplex Heteromer Protein 5 MHC class I antigen (Fragment) × 1 (U5YJJ6) peptide KRAS-G12V-9 × 1 TCR alpha chain × 1 TCR beta chain × 1 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name B2MG_HUMAN
Isoform —
PDB entities 2
Chains and sequence ranges Author chain B; PDBConstruct 1–99; UniProt 21–119 Author chain G; PDBConstruct 1–99; UniProt 21–119 Author chain L; PDBConstruct 1–99; UniProt 21–119 Author chain Q; PDBConstruct 1–99; UniProt 21–119 Author chain V; PDBConstruct 1–99; UniProt 21–119 Author chain a; PDBConstruct 1–99; UniProt 21–119 Author chain f; PDBConstruct 1–99; UniProt 21–119 Author chain k; PDBConstruct 1–99; UniProt 21–119 Author chain p; PDBConstruct 1–99; UniProt 21–119 Author chain u; PDBConstruct 1–99; UniProt 21–119

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

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2. Structure Basics 2. Structure Basics

Entry ID entry_id8i5c
Deposition date deposition_date2023-01-24
Structure title titleCrystal structure of a TCR in complex with HLA-A*11:01 bound to KRAS peptide (VVGAVGVGK)
Keywords keywordsKRAS, TCR, IMMUNE SYSTEM; IMMUNE SYSTEM
Experimental Method methodX-RAY DIFFRACTION
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3. Official assembly/model SAXS Official SAXS Profiles

This page reads only the latest assembly calculations. Every curve maps to an explicit PDB entry, official biological assembly and coordinate model.

8i5c__assembly_8__model_1

Assembly 8 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

Download this curve (.dat)

8i5c__assembly_8__model_1 | I(q)

10-2 10-1 106 107 108 q (1/Angstrom) I(q)
100 plotted points; both axes use logarithmic scales.

8i5c__assembly_8__model_1 | P(r) · Pending

The new assembly/model P(r) has not been calculated yet This placeholder does not display legacy data r (Angstrom) P(r)
P(r) will be calculated and displayed separately for the same assembly/model.
Rg(Guinier)37.07 Å
Rg (electron density)37.47 Å
Total Rg37.60 Å
Atom count6574
Residues820
Excluded volume114890 ų
Maximum q0.500 Å⁻¹
Assembly Model Structure unit Oligomeric description Status CRYSOL Actions
1 1 8i5c__assembly_1__model_1 pentameric (5) Success 4.1.3-1-20251215 (887e7ef) View Download
2 1 8i5c__assembly_2__model_1 pentameric (5) Success 4.1.3-1-20251215 (887e7ef) View Download
3 1 8i5c__assembly_3__model_1 pentameric (5) Success 4.1.3-1-20251215 (887e7ef) View Download
4 1 8i5c__assembly_4__model_1 pentameric (5) Success 4.1.3-1-20251215 (887e7ef) View Download
5 1 8i5c__assembly_5__model_1 pentameric (5) Success 4.1.3-1-20251215 (887e7ef) View Download
6 1 8i5c__assembly_6__model_1 pentameric (5) Success 4.1.3-1-20251215 (887e7ef) View Download
7 1 8i5c__assembly_7__model_1 pentameric (5) Success 4.1.3-1-20251215 (887e7ef) View Download
8 1 8i5c__assembly_8__model_1 pentameric (5) Success 4.1.3-1-20251215 (887e7ef) View Download
9 1 8i5c__assembly_9__model_1 pentameric (5) Success 4.1.3-1-20251215 (887e7ef) View Download
10 1 8i5c__assembly_10__model_1 pentameric (5) Success 4.1.3-1-20251215 (887e7ef) View Download
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4. Crystallography and Experiment 4. Crystallography & Experiment

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5. Entities and Polymers Entities & Polymers (5)

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6. Fold Classification (SCOP + CATH) 40 domains

CATH v4.4 (40 domains)

Domain ID domain_id8i5cA01
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology500 — Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1
Homologous superfamily homologous superfamily10 — MHC class I-like antigen recognition-like
Domain ID domain_id8i5cA02
Class class2 — Mainly Beta
Architecture architecture60 — Sandwich
Topology topology40 — Immunoglobulin-like
Homologous superfamily homologous superfamily10 — Immunoglobulins
Domain ID domain_id8i5cB01
Class class2 — Mainly Beta
Architecture architecture60 — Sandwich
Topology topology40 — Immunoglobulin-like
Homologous superfamily homologous superfamily10 — Immunoglobulins
Domain ID domain_id8i5cD01
Class class2 — Mainly Beta
Architecture architecture60 — Sandwich
Topology topology40 — Immunoglobulin-like
Homologous superfamily homologous superfamily10 — Immunoglobulins
Domain ID domain_id8i5cF01
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology500 — Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1
Homologous superfamily homologous superfamily10 — MHC class I-like antigen recognition-like
Domain ID domain_id8i5cF02
Class class2 — Mainly Beta
Architecture architecture60 — Sandwich
Topology topology40 — Immunoglobulin-like
Homologous superfamily homologous superfamily10 — Immunoglobulins
Domain ID domain_id8i5cG01
Class class2 — Mainly Beta
Architecture architecture60 — Sandwich
Topology topology40 — Immunoglobulin-like
Homologous superfamily homologous superfamily10 — Immunoglobulins
Domain ID domain_id8i5cI01
Class class2 — Mainly Beta
Architecture architecture60 — Sandwich
Topology topology40 — Immunoglobulin-like
Homologous superfamily homologous superfamily10 — Immunoglobulins
Domain ID domain_id8i5cK01
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology500 — Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1
Homologous superfamily homologous superfamily10 — MHC class I-like antigen recognition-like
Domain ID domain_id8i5cK02
Class class2 — Mainly Beta
Architecture architecture60 — Sandwich
Topology topology40 — Immunoglobulin-like
Homologous superfamily homologous superfamily10 — Immunoglobulins
Domain ID domain_id8i5cL01
Class class2 — Mainly Beta
Architecture architecture60 — Sandwich
Topology topology40 — Immunoglobulin-like
Homologous superfamily homologous superfamily10 — Immunoglobulins
Domain ID domain_id8i5cN01
Class class2 — Mainly Beta
Architecture architecture60 — Sandwich
Topology topology40 — Immunoglobulin-like
Homologous superfamily homologous superfamily10 — Immunoglobulins
Domain ID domain_id8i5cP01
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology500 — Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1
Homologous superfamily homologous superfamily10 — MHC class I-like antigen recognition-like
Domain ID domain_id8i5cP02
Class class2 — Mainly Beta
Architecture architecture60 — Sandwich
Topology topology40 — Immunoglobulin-like
Homologous superfamily homologous superfamily10 — Immunoglobulins
Domain ID domain_id8i5cQ01
Class class2 — Mainly Beta
Architecture architecture60 — Sandwich
Topology topology40 — Immunoglobulin-like
Homologous superfamily homologous superfamily10 — Immunoglobulins
Domain ID domain_id8i5cS01
Class class2 — Mainly Beta
Architecture architecture60 — Sandwich
Topology topology40 — Immunoglobulin-like
Homologous superfamily homologous superfamily10 — Immunoglobulins
Domain ID domain_id8i5cU01
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology500 — Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1
Homologous superfamily homologous superfamily10 — MHC class I-like antigen recognition-like
Domain ID domain_id8i5cU02
Class class2 — Mainly Beta
Architecture architecture60 — Sandwich
Topology topology40 — Immunoglobulin-like
Homologous superfamily homologous superfamily10 — Immunoglobulins
Domain ID domain_id8i5cV01
Class class2 — Mainly Beta
Architecture architecture60 — Sandwich
Topology topology40 — Immunoglobulin-like
Homologous superfamily homologous superfamily10 — Immunoglobulins
Domain ID domain_id8i5cX01
Class class2 — Mainly Beta
Architecture architecture60 — Sandwich
Topology topology40 — Immunoglobulin-like
Homologous superfamily homologous superfamily10 — Immunoglobulins
Domain ID domain_id8i5cZ01
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology500 — Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1
Homologous superfamily homologous superfamily10 — MHC class I-like antigen recognition-like
Domain ID domain_id8i5cZ02
Class class2 — Mainly Beta
Architecture architecture60 — Sandwich
Topology topology40 — Immunoglobulin-like
Homologous superfamily homologous superfamily10 — Immunoglobulins
Domain ID domain_id8i5ca01
Class class2 — Mainly Beta
Architecture architecture60 — Sandwich
Topology topology40 — Immunoglobulin-like
Homologous superfamily homologous superfamily10 — Immunoglobulins
Domain ID domain_id8i5cc01
Class class2 — Mainly Beta
Architecture architecture60 — Sandwich
Topology topology40 — Immunoglobulin-like
Homologous superfamily homologous superfamily10 — Immunoglobulins
Domain ID domain_id8i5ce01
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology500 — Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1
Homologous superfamily homologous superfamily10 — MHC class I-like antigen recognition-like
Domain ID domain_id8i5ce02
Class class2 — Mainly Beta
Architecture architecture60 — Sandwich
Topology topology40 — Immunoglobulin-like
Homologous superfamily homologous superfamily10 — Immunoglobulins
Domain ID domain_id8i5cf01
Class class2 — Mainly Beta
Architecture architecture60 — Sandwich
Topology topology40 — Immunoglobulin-like
Homologous superfamily homologous superfamily10 — Immunoglobulins
Domain ID domain_id8i5ch01
Class class2 — Mainly Beta
Architecture architecture60 — Sandwich
Topology topology40 — Immunoglobulin-like
Homologous superfamily homologous superfamily10 — Immunoglobulins
Domain ID domain_id8i5cj01
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology500 — Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1
Homologous superfamily homologous superfamily10 — MHC class I-like antigen recognition-like
Domain ID domain_id8i5cj02
Class class2 — Mainly Beta
Architecture architecture60 — Sandwich
Topology topology40 — Immunoglobulin-like
Homologous superfamily homologous superfamily10 — Immunoglobulins
Domain ID domain_id8i5ck01
Class class2 — Mainly Beta
Architecture architecture60 — Sandwich
Topology topology40 — Immunoglobulin-like
Homologous superfamily homologous superfamily10 — Immunoglobulins
Domain ID domain_id8i5cm01
Class class2 — Mainly Beta
Architecture architecture60 — Sandwich
Topology topology40 — Immunoglobulin-like
Homologous superfamily homologous superfamily10 — Immunoglobulins
Domain ID domain_id8i5co01
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology500 — Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1
Homologous superfamily homologous superfamily10 — MHC class I-like antigen recognition-like
Domain ID domain_id8i5co02
Class class2 — Mainly Beta
Architecture architecture60 — Sandwich
Topology topology40 — Immunoglobulin-like
Homologous superfamily homologous superfamily10 — Immunoglobulins
Domain ID domain_id8i5cp01
Class class2 — Mainly Beta
Architecture architecture60 — Sandwich
Topology topology40 — Immunoglobulin-like
Homologous superfamily homologous superfamily10 — Immunoglobulins
Domain ID domain_id8i5cr01
Class class2 — Mainly Beta
Architecture architecture60 — Sandwich
Topology topology40 — Immunoglobulin-like
Homologous superfamily homologous superfamily10 — Immunoglobulins
Domain ID domain_id8i5ct01
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology500 — Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1
Homologous superfamily homologous superfamily10 — MHC class I-like antigen recognition-like
Domain ID domain_id8i5ct02
Class class2 — Mainly Beta
Architecture architecture60 — Sandwich
Topology topology40 — Immunoglobulin-like
Homologous superfamily homologous superfamily10 — Immunoglobulins
Domain ID domain_id8i5cu01
Class class2 — Mainly Beta
Architecture architecture60 — Sandwich
Topology topology40 — Immunoglobulin-like
Homologous superfamily homologous superfamily10 — Immunoglobulins
Domain ID domain_id8i5cw01
Class class2 — Mainly Beta
Architecture architecture60 — Sandwich
Topology topology40 — Immunoglobulin-like
Homologous superfamily homologous superfamily10 — Immunoglobulins
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7. Citations (1)