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2J1N
osmoporin OmpC
Deposited 2006-08-15
|
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 3
PDB declaration: trimeric
|
Chain A
22–367(346 aa)
Chain B
22–367(346 aa)
Chain C
22–367(346 aa)
|
Not recorded
|
MG MAGNESIUM ION × 3
CL CHLORIDE ION × 2
D12 DODECANE × 11
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X-RAY DIFFRACTION
X-ray crystallization conditions
25 MG/ML OMPC IN 25 MM TRIS-HCL (PH 8.0), 0.5 M NACL, 1.8 % (W/W) N-OCTYL-2- HYDROXYETHYLSULFOXIDE (C8HESO), 0.3 % (V/V) OCTYL-POLYOXYETHYLENE (OCTYL-POE) WERE EQUILIBRATED AGAINST A RESERVOIR SOLUTION CONTAINING 25 MM TRIS-HCL (PH 8.0), 0.5 M NACL AND 28% PEG2000.
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Resolution 2.00 Å
R-free 0.214
|
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2J4U
E.coli OmpC - camel Lactoferrin complex
Deposited 2006-09-06
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Different construct
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 4
PDB declaration: tetrameric
|
Chain P
22–367(346 aa)
Fragment:RESIDUES 22-367
Chain Q
22–367(346 aa)
Fragment:RESIDUES 22-367
Chain R
22–367(346 aa)
Fragment:RESIDUES 22-367
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
mmCIF provides none of the parsed conditions
|
Resolution 2.99 Å
R-free 0.282
|
|
2J4U
E.coli OmpC - camel Lactoferrin complex
Deposited 2006-09-06
|
Different construct
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein heterocomplex
Heteromer;Protein × 4
PDB declaration: tetrameric
|
Chain U
22–367(346 aa)
Fragment:RESIDUES 22-367
Chain V
22–367(346 aa)
Fragment:RESIDUES 22-367
Chain W
22–367(346 aa)
Fragment:RESIDUES 22-367
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
mmCIF provides none of the parsed conditions
|
Resolution 2.99 Å
R-free 0.282
|
|
2ZLE
Cryo-EM structure of DegP12/OMP
Deposited 2008-04-09
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 13
PDB declaration: tridecameric
|
Chain D
22–367(346 aa)
|
Not recorded
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM vitrification conditions
Cryogen ETHANE;Embedded in vitreous ice using C-flat holey carbon grids (CF-2/2-4C-100, Protochip) and a Vitrobot (FEI) at 20 temperature and 100% relative humidity
|
Resolution 28.00 Å
|
|
3NB3
The host outer membrane proteins OmpA and OmpC are packed at specific sites in the Shigella phage Sf6 virion as structural components
Deposited 2010-06-02
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 240
PDB declaration: 240-MERIC
|
Chain D
22–367(346 aa)
Fragment:outer membrane protein C
|
Not recorded
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
10 mM Tris-HCl, pH 7.4, 10 mM MgCl2;pH 7.4;10 mM Tris-HCl, pH 7.4, 10 mM MgCl2
cryo-EM vitrification conditions
Cryogen ETHANE;Vitrification was carried out with a standard cryoEM method. The sample of 4 microlitres was applied to a holey EM grid, blotted for 3-4 seconds with a Whatman #2 filter paper, and plunged into ethane slush incubated in liquid nitrogen. The grid was stored in liquid nitrogen.
|
Resolution 19.00 Å
|
|
3NB3
The host outer membrane proteins OmpA and OmpC are packed at specific sites in the Shigella phage Sf6 virion as structural components
Deposited 2010-06-02
|
Different construct
Different mutation/modification
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein heterocomplex
Heteromer;Protein × 4
PDB declaration: tetrameric
|
Chain D
22–367(346 aa)
Fragment:outer membrane protein C
|
Not recorded
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
10 mM Tris-HCl, pH 7.4, 10 mM MgCl2;pH 7.4;10 mM Tris-HCl, pH 7.4, 10 mM MgCl2
cryo-EM vitrification conditions
Cryogen ETHANE;Vitrification was carried out with a standard cryoEM method. The sample of 4 microlitres was applied to a holey EM grid, blotted for 3-4 seconds with a Whatman #2 filter paper, and plunged into ethane slush incubated in liquid nitrogen. The grid was stored in liquid nitrogen.
|
Resolution 19.00 Å
|
|
3NB3
The host outer membrane proteins OmpA and OmpC are packed at specific sites in the Shigella phage Sf6 virion as structural components
Deposited 2010-06-02
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 3
Protein heterocomplex
Heteromer;Protein × 20
PDB declaration: eicosameric
|
Chain D
22–367(346 aa)
Fragment:outer membrane protein C
|
Not recorded
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
10 mM Tris-HCl, pH 7.4, 10 mM MgCl2;pH 7.4;10 mM Tris-HCl, pH 7.4, 10 mM MgCl2
cryo-EM vitrification conditions
Cryogen ETHANE;Vitrification was carried out with a standard cryoEM method. The sample of 4 microlitres was applied to a holey EM grid, blotted for 3-4 seconds with a Whatman #2 filter paper, and plunged into ethane slush incubated in liquid nitrogen. The grid was stored in liquid nitrogen.
|
Resolution 19.00 Å
|
|
3NB3
The host outer membrane proteins OmpA and OmpC are packed at specific sites in the Shigella phage Sf6 virion as structural components
Deposited 2010-06-02
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 4
Protein heterocomplex
Heteromer;Protein × 24
PDB declaration: 24-meric
|
Chain D
22–367(346 aa)
Fragment:outer membrane protein C
|
Not recorded
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
10 mM Tris-HCl, pH 7.4, 10 mM MgCl2;pH 7.4;10 mM Tris-HCl, pH 7.4, 10 mM MgCl2
cryo-EM vitrification conditions
Cryogen ETHANE;Vitrification was carried out with a standard cryoEM method. The sample of 4 microlitres was applied to a holey EM grid, blotted for 3-4 seconds with a Whatman #2 filter paper, and plunged into ethane slush incubated in liquid nitrogen. The grid was stored in liquid nitrogen.
|
Resolution 19.00 Å
|
|
3NB3
The host outer membrane proteins OmpA and OmpC are packed at specific sites in the Shigella phage Sf6 virion as structural components
Deposited 2010-06-02
|
Different construct
Different mutation/modification
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 5
Protein heterocomplex
Heteromer;Protein × 4
PDB declaration: tetrameric
|
Chain D
22–367(346 aa)
Fragment:outer membrane protein C
|
Not recorded
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
10 mM Tris-HCl, pH 7.4, 10 mM MgCl2;pH 7.4;10 mM Tris-HCl, pH 7.4, 10 mM MgCl2
cryo-EM vitrification conditions
Cryogen ETHANE;Vitrification was carried out with a standard cryoEM method. The sample of 4 microlitres was applied to a holey EM grid, blotted for 3-4 seconds with a Whatman #2 filter paper, and plunged into ethane slush incubated in liquid nitrogen. The grid was stored in liquid nitrogen.
|
Resolution 19.00 Å
|
|
4A8D
DegP dodecamer with bound OMP
Deposited 2011-11-20
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 13
PDB declaration: tridecameric
|
Chain M
22–367(346 aa)
|
Not recorded
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
300MM NACL, 50MM HEPES- NAOH;pH 8;300MM NACL, 50MM HEPES- NAOH
cryo-EM vitrification conditions
Cryogen ETHANE;EMBEDDED IN VITREOUS ICE USING C-FLAT HOLEY CARBON GRIDS AND A VITROBOT AT 20C.
|
Resolution 28.00 Å
|
|
8I8X
Cryo-EM Structure of OmpC3-MlaA-MlaC Complex in MSP2N2 Nanodiscs
Deposited 2023-02-05
|
Different oligomeric state
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 5
PDB declaration: pentameric
|
Chain A
22–367(346 aa)
Chain B
22–367(346 aa)
Chain C
22–367(346 aa)
|
Not recorded
|
KDL (2~{R},4~{R},5~{R},6~{R})-6-[(1~{R})-1,2-bis(oxidanyl)ethyl]-2-[(2~{R},4~{R},5~{R},6~{R})-6-[(1~{R})-1,2-bis(oxidanyl)ethyl]-2-carboxy-2-[[(2~{R},3~{S},4~{R},5~{R},6~{R})-5-[[(3~{R})-3-dodecanoyloxytetradecanoyl]amino]-6-[[(2~{R},3~{S},4~{R},5~{R},6~{R})-3-oxidanyl-5-[[(3~{R})-3-oxidanyltetradecanoyl]amino]-4-[(3~{R})-3-oxidanyltetradecanoyl]oxy-6-phosphonooxy-oxan-2-yl]methoxy]-3-phosphonooxy-4-[(3~{R})-3-tetradecanoyloxytetradecanoyl]oxy-oxan-2-yl]methoxy]-5-oxidanyl-oxan-4-yl]oxy-4,5-bis(oxidanyl)oxane-2-carboxylic acid × 3
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 8;Tris-buffered saline (TBS) buffer (20 mM Tris HCl pH 8.0, 150 mM NaCl)
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.25 Å
|