← Back to search
8q7z

Structure of the G. gallus 80S non-rotated ribosome

Method: ELECTRON MICROSCOPY Dmax: 238.3 Å Quality: EXCELLENT
▼

1. Protein Identity and Related Structures Protein Identity & Related Structures

60S ribosomal protein L41

OrganismNot specified

UniProt A0A087WNH4

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein–RNA Heteromer Protein × 75 RNA 5 PDB declaration: 80-meric（80） Consistent with all polymer counts Chain Az； UniProt 1–25 Not recorded 28S rRNA × 1 5.8S rRNA × 1 5S rRNA × 1 60S ribosomal protein L8 × 1 （F1NIX0） Ribosomal protein uL3 × 1 （Q5ZJZ2） 60S ribosomal protein L4 C-terminal domain-containing protein × 1 （Q5ZII1） Large ribosomal subunit protein uL18 × 1 （P22451） 60S ribosomal protein L6 × 1 （Q8UWG7） Large ribosomal subunit protein uL30 × 1 （Q5ZJ56） Large ribosomal subunit protein eL8 × 1 （P32429） 60S ribosomal protein L9 × 1 （A0A1D5NVI1） Large ribosomal subunit protein uL16 × 1 （Q08200） 60S ribosomal protein L11 × 1 （A0A1D5P3B1） Large ribosomal subunit protein eL13 × 1 （P41125） 60S ribosomal protein L14 × 1 （Q98TF9） Ribosomal protein L15 × 1 （F1NQG5） Ribosomal protein uL13 × 1 60S ribosomal protein L17 × 1 （A0A1D5PR40） Ribosomal protein L18 × 1 Ribosomal protein L19 × 1 （Q5ZKK8） 60S ribosomal protein L18a × 1 60S ribosomal protein L21 × 1 （R4GIQ2） Large ribosomal subunit protein eL22 × 1 （Q98TF8） Large ribosomal subunit protein uL14 × 1 Ribosomal protein L24 × 1 （A0A8V0XRE7） Ribosomal protein uL23 × 1 Ribosomal protein L26 like 1 × 1 （F2Z4K6） Large ribosomal subunit protein eL27 × 1 （P61355） Ribosomal protein uL15 × 1 60S ribosomal protein L29 × 1 （A0A1L1RNZ2） Large ribosomal subunit protein eL30 × 1 （P67883） 60S ribosomal protein L31 × 1 （A0A1L1RT94） Ribosomal protein L32 × 1 （E1BVB1） 60S ribosomal protein L35a × 1 （A0A8V0YS49） 60S ribosomal protein L34 × 1 （A0A1L1S0X5） Large ribosomal subunit protein uL29 × 1 （Q98TF7） Large ribosomal subunit protein eL36 × 1 （Q98TF6） Ribosomal protein L37 × 1 （E1C810） 60S ribosomal protein L38 × 1 （E1BU66） Large ribosomal subunit protein eL39 × 1 （Q98TF5） Ubiquitin-60S ribosomal protein L40 × 1 （O42388） Ribosomal protein L36a like × 1 （A0A8V0YUB1） Large ribosomal subunit protein eL43 × 1 （P32046） 60S ribosomal protein L28 × 1 （Q5F346） 18S rRNA × 1 Small ribosomal subunit protein eS1 × 1 40S ribosomal protein S27 × 1 （A0A3Q2TV39） 40S ribosomal protein S28 × 1 （A0A3Q2U825） 40S ribosomal protein S2 × 1 （A0A8V0Z891） Small ribosomal subunit protein eS4 × 1 （P47836） Ribosomal protein eS30 × 1 40S ribosomal protein S26 × 1 （Q5ZM66） Small ribosomal subunit protein eS6 × 1 （P47838） 40S ribosomal protein S7 × 1 （F1NN16） 40S ribosomal protein S8 × 1 （F1NB02） 40S ribosomal protein S9 × 1 （B7NZS8） 40S ribosomal protein S11 × 1 （Q98TH5） Small ribosomal subunit protein uS15 × 1 （Q6ITC7） Ribosomal protein S14 × 1 （Q5ZHW8） 40S ribosomal protein S20 × 1 （F1NH93） Small ribosomal subunit protein eS21 × 1 40S ribosomal protein S15a × 1 （A0A3Q3A7P6） Small ribosomal subunit protein uS12 × 1 40S ribosomal protein S24 × 1 （F1NF89） Small ribosomal subunit protein uS2 × 1 （P50890） Ribosomal protein S16 × 1 （R4GGJ0） Ubiquitin × 1 （P79781） Ribosomal protein S5 × 1 （G1TFM5） Small ribosomal subunit protein RACK1 × 1 （P63247） 40S ribosomal protein S29 × 1 （A0A8V0Z8V3） Ribosomal protein S10 × 1 （E1C4N0） Small ribosomal subunit protein eS12 × 1 （P84175） Small ribosomal subunit protein uS19 × 1 （P62846） 40S ribosomal protein S18 × 1 （G1TPG3） 40S ribosomal protein S19 × 1 40S ribosomal protein S25 × 1 （A0A8V1A7V4） DNA-(apurinic or apyrimidinic site) lyase × 1 （F1NPA9） Phe tRNA × 1 Small ribosomal subunit protein eS17 × 1 （P08636） MG MAGNESIUM ION × 494 ZN ZINC ION × 7 ELECTRON MICROSCOPY cryo-EM buffer：pH 7.5 cryo-EM vitrification conditions：Cryogen ETHANE Resolution 2.50 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

Other PDB Difference from Current Entry 8Q7Z Assembly / Oligomeric State Construct Mutations and Modifications Ligands, Ions and Non-polymers Method and Experimental Conditions Structure Quality
3JAG Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UAA stop codon Deposited 2015-06-10 Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 80 PDB declaration: 87-meric
Chain n 2–24（23 aa）
Not recorded MG MAGNESIUM ION × 195 ZN ZINC ION × 8 SF4 IRON/SULFUR CLUSTER × 2 ADP ADENOSINE-5'-DIPHOSPHATE × 2 ELECTRON MICROSCOPY
cryo-EM buffer 50 mM HEPES, 100 mM potassium acetate, 5 mM magnesium acetate, 1 mM DTT；pH 7.4；50 mM HEPES, 100 mM potassium acetate, 5 mM magnesium acetate, 1 mM DTT
cryo-EM vitrification conditions After 30 second wait time, blot for 3 seconds before plunging；Cryogen ETHANE；After 30 second wait time, blot for 3 seconds before plunging into liquid ethane (FEI VITROBOT MARK III).
Resolution 3.65 Å
3JAH Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UAG stop codon Deposited 2015-06-10 Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 80 PDB declaration: 87-meric
Chain n 2–24（23 aa）
Not recorded MG MAGNESIUM ION × 195 ZN ZINC ION × 8 SF4 IRON/SULFUR CLUSTER × 2 ADP ADENOSINE-5'-DIPHOSPHATE × 2 ELECTRON MICROSCOPY
cryo-EM buffer 50 mM HEPES, 100 mM potassium acetate, 5 mM magnesium acetate, 1 mM DTT；pH 7.4；50 mM HEPES, 100 mM potassium acetate, 5 mM magnesium acetate, 1 mM DTT
cryo-EM vitrification conditions After 30 second wait time, blot for 3 seconds before plunging；Cryogen ETHANE；After 30 second wait time, blot for 3 seconds before plunging into liquid ethane (FEI VITROBOT MARK III).
Resolution 3.45 Å
3JAI Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UGA stop codon Deposited 2015-06-10 Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 80 PDB declaration: 87-meric
Chain n 2–24（23 aa）
Not recorded MG MAGNESIUM ION × 195 ZN ZINC ION × 8 SF4 IRON/SULFUR CLUSTER × 2 ADP ADENOSINE-5'-DIPHOSPHATE × 2 ELECTRON MICROSCOPY
cryo-EM buffer 50 mM HEPES, 100 mM potassium acetate, 5 mM magnesium acetate, 1 mM DTT；pH 7.4；50 mM HEPES, 100 mM potassium acetate, 5 mM magnesium acetate, 1 mM DTT
cryo-EM vitrification conditions After 30 second wait time, blot for 3 seconds before plunging；Cryogen ETHANE；After 30 second wait time, blot for 3 seconds before plunging into liquid ethane (FEI VITROBOT MARK III).
Resolution 3.65 Å
5LZU Structure of the mammalian ribosomal termination complex with accommodated eRF1 Deposited 2016-10-02 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 78 PDB declaration: 85-meric
Chain n 1–25（25 aa）
Not recorded MG MAGNESIUM ION × 258 ZN ZINC ION × 8 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.4
cryo-EM vitrification conditions Cryogen ETHANE；3 ul aliquots were applied to the grid and incubated for 30 s, before blotting for 3s to remove excess solution.
Resolution 3.75 Å
6FTG Subtomogram average of OST-containing ribosome-translocon complexes from canine rough microsomal membranes Deposited 2018-02-22 Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 55 PDB declaration: 58-meric
Chain n 2–24（23 aa）
Not recorded MG MAGNESIUM ION × 159 ZN ZINC ION × 5 9UB [(2~{S},3~{R},4~{R},5~{S},6~{R})-3-acetamido-6-(hydroxymethyl)-4,5-bis(oxidanyl)oxan-2-yl]methyl-[oxidanyl-[(2~{Z},6~{Z},10~{Z})-3,7,11,15-tetramethylhexadeca-2,6,10,14-tetraenoxy]phosphoryl]oxy-phosphinic acid × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.6
cryo-EM vitrification conditions Cryogen ETHANE-PROPANE；Blot 3 seconds before plunging.
Resolution 9.10 Å
6FTI Cryo-EM Structure of the Mammalian Oligosaccharyltransferase Bound to Sec61 and the Programmed 80S Ribosome Deposited 2018-02-22 Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 56 PDB declaration: 60-meric
Chain n 2–24（23 aa）
Not recorded MG MAGNESIUM ION × 159 ZN ZINC ION × 5 9UB [(2~{S},3~{R},4~{R},5~{S},6~{R})-3-acetamido-6-(hydroxymethyl)-4,5-bis(oxidanyl)oxan-2-yl]methyl-[oxidanyl-[(2~{Z},6~{Z},10~{Z})-3,7,11,15-tetramethylhexadeca-2,6,10,14-tetraenoxy]phosphoryl]oxy-phosphinic acid × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.4
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 4.20 Å
6FTJ Cryo-EM Structure of the Mammalian Oligosaccharyltransferase Bound to Sec61 and the Non-programmed 80S Ribosome Deposited 2018-02-22 Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 55 PDB declaration: 58-meric
Chain n 2–24（23 aa）
Not recorded MG MAGNESIUM ION × 159 ZN ZINC ION × 5 9UB [(2~{S},3~{R},4~{R},5~{S},6~{R})-3-acetamido-6-(hydroxymethyl)-4,5-bis(oxidanyl)oxan-2-yl]methyl-[oxidanyl-[(2~{Z},6~{Z},10~{Z})-3,7,11,15-tetramethylhexadeca-2,6,10,14-tetraenoxy]phosphoryl]oxy-phosphinic acid × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.4
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 4.70 Å
6P4G Structure of a mammalian small ribosomal subunit in complex with the Israeli Acute Paralysis Virus IRES (Class 1) Deposited 2019-05-27 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 34 PDB declaration: 36-meric
Chain n 1–25（25 aa）
Not recorded No recorded non-water small molecule ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE；Blot force = 3s Wait time = 15s Drain time = 0s Blot time = 2.5 to 3 s
cryo-EM vitrification conditions Cryogen ETHANE；Blot force = 3s Wait time = 15s Drain time = 0s Blot time = 2.5 to 3 s
Resolution 3.10 Å
6P4H Structure of a mammalian small ribosomal subunit in complex with the Israeli Acute Paralysis Virus IRES (Class 2) Deposited 2019-05-27 Different oligomeric state Different ligand/ion Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 34 PDB declaration: 36-meric
Chain n 1–25（25 aa）
Not recorded No recorded non-water small molecule ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 3.20 Å
6P5I Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 1) Deposited 2019-05-30 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 76 PDB declaration: 81-meric
Chain An 1–25（25 aa）
Not recorded No recorded non-water small molecule ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE；Blot force = 3s Wait time = 15s Drain time = 0s Blot time = 2.5 to 3 s
Resolution 3.10 Å
6P5J Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 2) Deposited 2019-05-30 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 76 PDB declaration: 81-meric
Chain An 1–25（25 aa）
Not recorded No recorded non-water small molecule ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE；Blot force = 3s Wait time = 15s Drain time = 0s Blot time = 2.5 to 3 s
Resolution 3.10 Å
6P5K Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 3) Deposited 2019-05-30 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 76 PDB declaration: 81-meric
Chain An 1–25（25 aa）
Not recorded No recorded non-water small molecule ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE；Blot force = 3s Wait time = 15s Drain time = 0s Blot time = 2.5 to 3 s
Resolution 3.10 Å
6P5N Structure of a mammalian 80S ribosome in complex with a single translocated Israeli Acute Paralysis Virus IRES and eRF1 Deposited 2019-05-30 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 77 PDB declaration: 82-meric
Chain An 1–25（25 aa）
Not recorded No recorded non-water small molecule ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE；Blot force = 3s Wait time = 15s Drain time = 0s Blot time = 2.5s
Resolution 3.20 Å
6R5Q Structure of XBP1u-paused ribosome nascent chain complex (post-state) Deposited 2019-03-25 Different oligomeric state Different ligand/ion Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 78 PDB declaration: 85-meric
Chain n 1–25（25 aa）
Not recorded MG MAGNESIUM ION × 299 ZN ZINC ION × 6 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 3.00 Å
6R6G Structure of XBP1u-paused ribosome nascent chain complex with SRP. Deposited 2019-03-27 Different oligomeric state Different ligand/ion Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 84 PDB declaration: 92-meric
Chain n 1–25（25 aa）
Not recorded MG MAGNESIUM ION × 299 ZN ZINC ION × 5 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 3.70 Å
6R6P Structure of XBP1u-paused ribosome nascent chain complex (rotated state) Deposited 2019-03-27 Different construct Different oligomeric state Different ligand/ion Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 78 PDB declaration: 85-meric
Chain n 2–24（23 aa）
Not recorded MG MAGNESIUM ION × 159 ZN ZINC ION × 5 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 3.10 Å
6R7Q Structure of XBP1u-paused ribosome nascent chain complex with Sec61. Deposited 2019-03-29 Different oligomeric state Different ligand/ion Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 81 PDB declaration: 88-meric
Chain n 1–25（25 aa）
Not recorded ZN ZINC ION × 6 MG MAGNESIUM ION × 299 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 3.90 Å
6SGC Rabbit 80S ribosome stalled on a poly(A) tail Deposited 2019-08-03 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 79 PDB declaration: 86-meric
Chain n2 1–25（25 aa）
Not recorded MG MAGNESIUM ION × 275 ZN ZINC ION × 8 SPD SPERMIDINE × 2 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.4
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 2.80 Å
6T59 Structure of rabbit 80S ribosome translating beta-tubulin in complex with tetratricopeptide protein 5 and nascent chain-associated complex Deposited 2019-10-15 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 49 PDB declaration: 53-meric
Chain n3 1–25（25 aa）
Not recorded MG MAGNESIUM ION × 220 ZN ZINC ION × 5 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.4
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 3.11 Å
6YAL Mammalian 48S late-stage initiation complex with beta-globin mRNA Deposited 2020-03-12 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 38 PDB declaration: 41-meric
Chain l 1–25（25 aa）
Not recorded SF4 IRON/SULFUR CLUSTER × 2 MG MAGNESIUM ION × 1 GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER × 2 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.4
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 3.00 Å
6YAM Mammalian 48S late-stage translation initiation complex (LS48S+eIF3 IC) with beta-globin mRNA Deposited 2020-03-12 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 47 PDB declaration: 50-meric
Chain l 1–25（25 aa）
Not recorded SF4 IRON/SULFUR CLUSTER × 2 MG MAGNESIUM ION × 1 GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER × 2 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.4
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 3.60 Å
6YAN Mammalian 48S late-stage translation initiation complex with histone 4 mRNA Deposited 2020-03-12 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 36 PDB declaration: 39-meric
Chain l 1–25（25 aa）
Not recorded No recorded non-water small molecule ELECTRON MICROSCOPY
cryo-EM buffer pH 7.4
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 3.48 Å
6ZVK The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanism Deposited 2020-07-24 Different construct Different oligomeric state Different ligand/ion Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 80 PDB declaration: 85-meric
Chain X3 2–24（23 aa）
Not recorded ZN ZINC ION × 6 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 3.49 Å
7A01 The Halastavi arva virus intergenic region IRES promotes translation by the simplest possible initiation mechanism Deposited 2020-08-05 Different construct Different oligomeric state Different ligand/ion Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 80 PDB declaration: 85-meric
Chain X3 2–24（23 aa）
Not recorded ZN ZINC ION × 6 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 3.60 Å
7MDZ 80S rabbit ribosome stalled with benzamide-CHX Deposited 2021-04-06 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 75 PDB declaration: 81-meric
Chain n 1–25（25 aa）
Not recorded MG MAGNESIUM ION × 277 ZN ZINC ION × 8 Z2V N-[(1R,3S,4R,5S)-3-{(1R)-2-[(2R,4r,6S)-2,6-dihydroxypiperidin-4-yl]-1-hydroxyethyl}-4-hydroxy-1,5-dimethylcyclohexyl]benzamide × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.4
cryo-EM vitrification conditions Cryogen ETHANE；3 sec blot
Resolution 3.20 Å
7NFX Mammalian ribosome nascent chain complex with SRP and SRP receptor in early state A Deposited 2021-02-08 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 51 PDB declaration: 55-meric
Chain n 1–25（25 aa）
Not recorded ZN ZINC ION × 5 MG MAGNESIUM ION × 2 GTP GUANOSINE-5'-TRIPHOSPHATE × 1 GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE-PROPANE
Resolution 3.20 Å
7NWG Mammalian pre-termination 80S ribosome with Hybrid P/E- and A/P-site tRNA's bound by Blasticidin S. Deposited 2021-03-16 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 79 PDB declaration: 86-meric
Chain n3 1–25（25 aa）
Not recorded MG MAGNESIUM ION × 299 BLS BLASTICIDIN S × 1 ZN ZINC ION × 8 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.4；50 mM HEPES pH 7.4 100 mM KOAc 5 mM Mg(Oac)2 1mM DTT
cryo-EM vitrification conditions Cryogen ETHANE；30s sample incubation on grid followed by 1.1s blotting time.
Resolution 3.80 Å
7NWH Mammalian pre-termination 80S ribosome with eRF1 and eRF3 bound by Blasticidin S. Deposited 2021-03-16 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 79 PDB declaration: 84-meric
Chain n 1–25（25 aa）
Not recorded ZN ZINC ION × 8 MG MAGNESIUM ION × 281 GCP PHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTER × 1 BLS BLASTICIDIN S × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.4；50 mM HEPES pH 7.4 100 mM KOAc 5 mM Mg(Oac)2 1mM DTT
cryo-EM vitrification conditions Cryogen ETHANE；30s sample incubation on grid followed by 1.1s blotting time.
Resolution 4.10 Å
7NWI Mammalian pre-termination 80S ribosome with Empty-A site bound by Blasticidin S Deposited 2021-03-16 Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 78 PDB declaration: 84-meric
Chain n 2–24（23 aa）
Not recorded MG MAGNESIUM ION × 210 ZN ZINC ION × 5 BLS BLASTICIDIN S × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.4；50 mM HEPES pH 7.4 100 mM KOAc 5 mM Mg(Oac)2 1mM DTT
cryo-EM vitrification conditions Cryogen ETHANE；30s sample incubation on grid followed by 1.1s blotting time.
Resolution 3.13 Å
7O7Y Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (high resolution) Deposited 2021-04-14 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 79 PDB declaration: 86-meric
Chain Az 1–25（25 aa）
Not recorded SPD SPERMIDINE × 30 SPM SPERMINE × 3 MG MAGNESIUM ION × 420 UNX UNKNOWN LIGAND × 330 ZN ZINC ION × 8 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.4
cryo-EM vitrification conditions Cryogen ETHANE-PROPANE
Resolution 2.20 Å
7O7Z Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (classified for pseudoknot) Deposited 2021-04-14 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 79 PDB declaration: 86-meric
Chain Az 1–25（25 aa）
Not recorded SPD SPERMIDINE × 30 SPM SPERMINE × 3 MG MAGNESIUM ION × 420 UNX UNKNOWN LIGAND × 329 ZN ZINC ION × 8 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.4
cryo-EM vitrification conditions Cryogen ETHANE-PROPANE
Resolution 2.40 Å
7O80 Rabbit 80S ribosome in complex with eRF1 and ABCE1 stalled at the STOP codon in the mutated SARS-CoV-2 slippery site Deposited 2021-04-14 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 81 PDB declaration: 88-meric
Chain Az 1–25（25 aa）
Not recorded SPD SPERMIDINE × 1 MG MAGNESIUM ION × 355 UNX UNKNOWN LIGAND × 374 ZN ZINC ION × 8 GTP GUANOSINE-5'-TRIPHOSPHATE × 1 SF4 IRON/SULFUR CLUSTER × 2 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.4
cryo-EM vitrification conditions Cryogen ETHANE-PROPANE
Resolution 2.90 Å
7O81 Rabbit 80S ribosome colliding in another ribosome stalled by the SARS-CoV-2 pseudoknot Deposited 2021-04-14 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 80 PDB declaration: 87-meric
Chain Az 1–25（25 aa）
Not recorded MG MAGNESIUM ION × 349 UNX UNKNOWN LIGAND × 266 ZN ZINC ION × 8 SPD SPERMIDINE × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.4
cryo-EM vitrification conditions Cryogen ETHANE-PROPANE
Resolution 3.10 Å
7OBR RNC-SRP early complex Deposited 2021-04-23 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 49 PDB declaration: 53-meric
Chain n 1–25（25 aa）
Not recorded MG MAGNESIUM ION × 97 ZN ZINC ION × 5 GDP GUANOSINE-5'-DIPHOSPHATE × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE-PROPANE
Resolution 2.80 Å
7OYD Cryo-EM structure of a rabbit 80S ribosome with zebrafish Dap1b Deposited 2021-06-24 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 79 PDB declaration: 83-meric
Chain n 1–25（25 aa）
Not recorded MG MAGNESIUM ION × 201 ZN ZINC ION × 7 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.6
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 2.30 Å
7QWQ Ternary complex of ribosome nascent chain with SRP and NAC Deposited 2022-01-25 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 48 PDB declaration: 52-meric
Chain n 1–25（25 aa）
Not recorded MG MAGNESIUM ION × 97 ZN ZINC ION × 5 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE-PROPANE
Resolution 2.83 Å
7QWR Structure of the ribosome-nascent chain containing an ER signal sequence in complex with NAC Deposited 2022-01-25 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 45 PDB declaration: 48-meric
Chain n 1–25（25 aa）
Not recorded ZN ZINC ION × 5 MG MAGNESIUM ION × 97 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE-PROPANE
Resolution 2.90 Å
7QWS Structure of ribosome translating beta-tubulin in complex with TTC5 and NAC Deposited 2022-01-25 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 46 PDB declaration: 49-meric
Chain n 1–25（25 aa）
Not recorded ZN ZINC ION × 5 MG MAGNESIUM ION × 97 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE-PROPANE
Resolution 3.40 Å
7SYG Structure of the HCV IRES binding to the 40S ribosomal subunit, closed conformation. Structure 1(delta dII) Deposited 2021-11-25 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 34 PDB declaration: 36-meric
Chain n 1–25（25 aa）
Not recorded ZN ZINC ION × 2 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE-PROPANE；4 second blot time, force 3
Resolution 4.30 Å
7SYH Structure of the HCV IRES binding to the 40S ribosomal subunit, closed conformation. Structure 2(delta dII) Deposited 2021-11-25 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 34 PDB declaration: 36-meric
Chain n 1–25（25 aa）
Not recorded ZN ZINC ION × 2 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE-PROPANE；4 second blot time, force 3
Resolution 4.60 Å
7SYI Structure of the HCV IRES binding to the 40S ribosomal subunit, closed conformation. Structure 3(delta dII) Deposited 2021-11-25 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 34 PDB declaration: 36-meric
Chain n 1–25（25 aa）
Not recorded ZN ZINC ION × 2 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE-PROPANE；4 second blot time, force 3
Resolution 4.50 Å
7SYJ Structure of the HCV IRES binding to the 40S ribosomal subunit, closed conformation. Structure 4(delta dII) Deposited 2021-11-25 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 34 PDB declaration: 36-meric
Chain n 1–25（25 aa）
Not recorded ZN ZINC ION × 2 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE-PROPANE；4 second blot time, force 3
Resolution 4.80 Å
7SYK Structure of the HCV IRES binding to the 40S ribosomal subunit, closed conformation. Structure 5(delta dII) Deposited 2021-11-25 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 34 PDB declaration: 36-meric
Chain n 1–25（25 aa）
Not recorded ZN ZINC ION × 2 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE-PROPANE；4 second blot time, force 3
Resolution 4.20 Å
7SYL Structure of the HCV IRES bound to the 40S ribosomal subunit, closed conformation. Structure 6(delta dII) Deposited 2021-11-25 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 34 PDB declaration: 36-meric
Chain n 1–25（25 aa）
Not recorded ZN ZINC ION × 2 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE-PROPANE；4 second blot time, force 3
Resolution 4.50 Å
7SYM Structure of the HCV IRES bound to the 40S ribosomal subunit, head opening. Structure 7(delta dII) Deposited 2021-11-25 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 34 PDB declaration: 36-meric
Chain n 1–25（25 aa）
Not recorded ZN ZINC ION × 2 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE-PROPANE；4 second blot time, force 3
Resolution 4.80 Å
7SYN Structure of the HCV IRES bound to the 40S ribosomal subunit, head opening. Structure 8(delta dII) Deposited 2021-11-25 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 34 PDB declaration: 36-meric
Chain n 1–25（25 aa）
Not recorded ZN ZINC ION × 2 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE-PROPANE；4 second blot time, force 3
Resolution 4.00 Å
7SYO Structure of the HCV IRES bound to the 40S ribosomal subunit, head open. Structure 9(delta dII) Deposited 2021-11-25 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 34 PDB declaration: 36-meric
Chain n 1–25（25 aa）
Not recorded ZN ZINC ION × 2 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE-PROPANE；4 second blot time, force 3
Resolution 4.60 Å
7SYP Structure of the wt IRES and 40S ribosome binary complex, open conformation. Structure 10(wt) Deposited 2021-11-25 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 34 PDB declaration: 37-meric
Chain n 1–25（25 aa）
Not recorded ZN ZINC ION × 2 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE-PROPANE；4 second blot time, force 3
Resolution 4.00 Å
7SYQ Structure of the wt IRES and 40S ribosome ternary complex, open conformation. Structure 11(wt) Deposited 2021-11-25 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 35 PDB declaration: 37-meric
Chain n 1–25（25 aa）
Not recorded ZN ZINC ION × 2 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE-PROPANE；4 second blot time, force 3
Resolution 3.80 Å
7SYR Structure of the wt IRES eIF2-containing 48S initiation complex, closed conformation. Structure 12(wt). Deposited 2021-11-25 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 36 PDB declaration: 39-meric
Chain n 1–25（25 aa）
Not recorded ZN ZINC ION × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE-PROPANE；4 second blot time, force 3
Resolution 3.60 Å
7SYS Structure of the delta dII IRES eIF2-containing 48S initiation complex, closed conformation. Structure 12(delta dII). Deposited 2021-11-25 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 36 PDB declaration: 39-meric
Chain n 1–25（25 aa）
Not recorded ZN ZINC ION × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE-PROPANE；4 second blot time, force 3
Resolution 3.50 Å
7SYT Structure of the wt IRES w/o eIF2 48S initiation complex, closed conformation. Structure 13(wt) Deposited 2021-11-25 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 34 PDB declaration: 37-meric
Chain n 1–25（25 aa）
Not recorded ZN ZINC ION × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE-PROPANE；4 second blot time, force 3
Resolution 4.40 Å
7SYU Structure of the delta dII IRES w/o eIF2 48S initiation complex, closed conformation. Structure 13(delta dII) Deposited 2021-11-25 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 34 PDB declaration: 37-meric
Chain n 1–25（25 aa）
Not recorded ZN ZINC ION × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE-PROPANE；4 second blot time, force 3
Resolution 4.60 Å
7SYV Structure of the wt IRES eIF5B-containing pre-48S initiation complex, open conformation. Structure 14(wt) Deposited 2021-11-25 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 36 PDB declaration: 39-meric
Chain n 1–25（25 aa）
Not recorded ZN ZINC ION × 2 GTP GUANOSINE-5'-TRIPHOSPHATE × 1 MG MAGNESIUM ION × 1 NA SODIUM ION × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE-PROPANE；4 second blot time, force 3
Resolution 3.90 Å
7SYW Structure of the wt IRES eIF5B-containing 48S initiation complex, closed conformation. Structure 15(wt) Deposited 2021-11-25 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 36 PDB declaration: 39-meric
Chain n 1–25（25 aa）
Not recorded ZN ZINC ION × 1 GTP GUANOSINE-5'-TRIPHOSPHATE × 1 MG MAGNESIUM ION × 1 NA SODIUM ION × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE-PROPANE；4 second blot time, force 3
Resolution 3.70 Å
7SYX Structure of the delta dII IRES eIF5B-containing 48S initiation complex, closed conformation. Structure 15(delta dII) Deposited 2021-11-25 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 36 PDB declaration: 39-meric
Chain n 1–25（25 aa）
Not recorded ZN ZINC ION × 1 MG MAGNESIUM ION × 1 GTP GUANOSINE-5'-TRIPHOSPHATE × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE-PROPANE；4 second blot time, force 3
Resolution 3.70 Å
7TM3 Structure of the rabbit 80S ribosome stalled on a 2-TMD Rhodopsin intermediate in complex with the multipass translocon Deposited 2022-01-19 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 50 PDB declaration: 54-meric
Chain n 1–25（25 aa）
Not recorded MG MAGNESIUM ION × 220 ZN ZINC ION × 5 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5；50 mM HEPES-KOH, pH 7.5, 200 mM KOAc, 5 mM Mg(OAc)2, 0.25% digitonin, 50 mM biotin
cryo-EM vitrification conditions Cryogen ETHANE；blot for 4 sec with Whatman filter papers at a blot force of -15 before plunging
Resolution 3.25 Å
7TOR Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20 Deposited 2022-01-24 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 79 PDB declaration: 86-meric
Chain AL41 1–25（25 aa）
Not recorded ZN ZINC ION × 6 ELECTRON MICROSCOPY
cryo-EM buffer pH 7
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 2.90 Å
7TUT Structure of the rabbit 80S ribosome stalled on a 4-TMD Rhodopsin intermediate in complex with the multipass translocon Deposited 2022-02-03 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 52 PDB declaration: 56-meric
Chain n 1–25（25 aa）
Not recorded MG MAGNESIUM ION × 220 ZN ZINC ION × 5 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5；50 mM HEPES-KOH, pH 7.5, 200 mM potassium acetate, 5 mM magnesium acetate, 0.25% digitonin, 50 mM biotin
cryo-EM vitrification conditions Cryogen ETHANE；Blot for 4 seconds with Whatman filter papers at a blot force of -15 before plunging.
Resolution 3.88 Å
7UCJ Mammalian 80S translation initiation complex with mRNA and Harringtonine Deposited 2022-03-16 Different oligomeric state Different ligand/ion Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 73 PDB declaration: 79-meric
Chain n 1–25（25 aa）
Not recorded MG MAGNESIUM ION × 296 MQ6 Harringtonine × 1 ZN ZINC ION × 7 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 3.10 Å
7UCK 80S translation initiation complex with ac4c(-1) mRNA and Harringtonine Deposited 2022-03-16 Different oligomeric state Different ligand/ion Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 73 PDB declaration: 79-meric
Chain n 1–25（25 aa）
Not recorded MG MAGNESIUM ION × 297 MQ6 Harringtonine × 1 ZN ZINC ION × 7 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 2.80 Å
7ZJW Rabbit 80S ribosome as it decodes the Sec-UGA codon Deposited 2022-04-12 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 79 PDB declaration: 86-meric
Chain Sl 1–25（25 aa）
Not recorded GTP GUANOSINE-5'-TRIPHOSPHATE × 2 SER SERINE × 1 MG MAGNESIUM ION × 225 K POTASSIUM ION × 18 ZN ZINC ION × 9 NA SODIUM ION × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.6
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 2.80 Å
7ZJX Rabbit 80S ribosome programmed with SECIS and SBP2 Deposited 2022-04-12 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 77 PDB declaration: 83-meric
Chain Sl 1–25（25 aa）
Not recorded ZN ZINC ION × 8 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.6
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 3.10 Å
8B5L Cryo-EM structure of ribosome-Sec61-TRAP (TRanslocon Associated Protein) translocon complex Deposited 2022-09-23 Different oligomeric state Different ligand/ion Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 48 PDB declaration: 51-meric
Chain n 1–25（25 aa）
Not recorded MG MAGNESIUM ION × 178 ZN ZINC ION × 5 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 2.86 Å
8B6C Cryo-EM structure of ribosome-Sec61 in complex with cyclotriazadisulfonamide derivative CK147 Deposited 2022-09-26 Different oligomeric state Different ligand/ion Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 44 PDB declaration: 47-meric
Chain n 1–25（25 aa）
Not recorded MG MAGNESIUM ION × 178 ZN ZINC ION × 5 OWI 4-[[9-(cyclohexylmethyl)-3-methylidene-5-(4-methylphenyl)sulfonyl-1,5,9-triazacyclododec-1-yl]sulfonyl]-~{N},~{N}-dimethyl-aniline × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 2.79 Å
8BHF Cryo-EM structure of stalled rabbit 80S ribosomes in complex with human CCR4-NOT and CNOT4 Deposited 2022-10-31 Different oligomeric state Different ligand/ion Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 80 PDB declaration: 86-meric
Chain a1 1–25（25 aa）
Not recorded MG MAGNESIUM ION × 275 ZN ZINC ION × 7 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 3.10 Å
8BPO Structure of rabbit 80S ribosome translating beta-tubulin in complex with tetratricopeptide protein 5 (TTC5) and S-phase Cyclin A Associated Protein residing in the ER (SCAPER) Deposited 2022-11-17 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 48 PDB declaration: 51-meric
Chain m2 1–25（25 aa）
Not recorded MG MAGNESIUM ION × 214 ZN ZINC ION × 5 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.4
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 2.80 Å
8BTK Structure of the TRAP complex with the Sec translocon and a translating ribosome Deposited 2022-11-29 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Insufficient information Heteromer；Protein × 86 PDB declaration: 92-meric
Chain Az 1–25（25 aa）
Not recorded SPD SPERMIDINE × 30 SPM SPERMINE × 3 MG MAGNESIUM ION × 750 GTP GUANOSINE-5'-TRIPHOSPHATE × 1 AAC ACETYLAMINO-ACETIC ACID × 1 ZN ZINC ION × 8 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE-PROPANE；3.5 uL of sample was incubated on the grid for 60 seconds at 4*C and 100% humidity before being blotted and plunged into liquid ethane/propane mix cooled to liquid nitrogen temperature
Resolution 3.50 Å
8P03 48S late-stage initiation complex with m6A mRNA Deposited 2023-05-09 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 37 PDB declaration: 40-meric
Chain l 1–25（25 aa）
Not recorded MG MAGNESIUM ION × 178 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.4
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 3.04 Å
8P09 48S late-stage initiation complex with non methylated mRNA Deposited 2023-05-09 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 37 PDB declaration: 40-meric
Chain l 1–25（25 aa）
Not recorded MG MAGNESIUM ION × 230 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.4
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 3.30 Å
8P2K Ternary complex of translating ribosome, NAC and METAP1 Deposited 2023-05-16 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 82 PDB declaration: 88-meric
Chain Az 1–25（25 aa）
Not recorded N ANY 5'-MONOPHOSPHATE NUCLEOTIDE × 73 SPD SPERMIDINE × 30 SPM SPERMINE × 3 MG MAGNESIUM ION × 420 UNX UNKNOWN LIGAND × 312 GTP GUANOSINE-5'-TRIPHOSPHATE × 1 AAC ACETYLAMINO-ACETIC ACID × 1 ZN ZINC ION × 8 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.6
cryo-EM vitrification conditions Cryogen ETHANE-PROPANE
Resolution 2.90 Å
8Q87 Structure of the G. gallus 80S rotated ribosome in complex with eEF2 and SERBP1 Deposited 2023-08-18 Different oligomeric state Different ligand/ion Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 80 PDB declaration: 85-meric
Chain Az 1–25（25 aa）
Not recorded MG MAGNESIUM ION × 492 ZN ZINC ION × 8 GDP GUANOSINE-5'-DIPHOSPHATE × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 2.40 Å
8RJB Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-RAMP4 Deposited 2023-12-20 Different oligomeric state Different ligand/ion Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 47 PDB declaration: 51-meric
Chain n 1–25（25 aa）
Not recorded MG MAGNESIUM ION × 218 ZN ZINC ION × 5 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 2.69 Å
8RJC Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-TRAP, open conformation 1 Deposited 2023-12-20 Different oligomeric state Different ligand/ion Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 52 PDB declaration: 56-meric
Chain n 1–25（25 aa）
Not recorded MG MAGNESIUM ION × 218 ZN ZINC ION × 5 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 2.90 Å
8RJD Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-TRAP, open conformation 2 Deposited 2023-12-20 Different oligomeric state Different ligand/ion Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 52 PDB declaration: 56-meric
Chain n 1–25（25 aa）
Not recorded MG MAGNESIUM ION × 218 ZN ZINC ION × 5 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 2.79 Å
8SCB Terminating ribosome with SRI-41315 Deposited 2023-04-05 Different oligomeric state Different ligand/ion Assembly 1 Protein–RNA Heteromer；Protein × 80 PDB declaration: 87-meric
Chain n 1–25（25 aa）
Not recorded MG MAGNESIUM ION × 312 ZN ZINC ION × 8 ZVM (2S,4aS)-2-cyclobutyl-10-methyl-3-phenyl-2,10-dihydropyrimido[4,5-b]quinoline-4,5(3H,4aH)-dione × 1 SF4 IRON/SULFUR CLUSTER × 2 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 2.50 Å
8SUP Structure of the 48S translation initiation complex assembled on the encephalomyocarditis virus IRES Deposited 2023-05-12 Different oligomeric state Different ligand/ion Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 44 PDB declaration: 47-meric
Chain n 1–25（25 aa）
Not recorded ZN ZINC ION × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 3.10 Å
8VFT Translating 80S rabbit ribosome stalled by emetine with eEF2 Deposited 2023-12-22 Different oligomeric state Different ligand/ion Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 78 PDB declaration: 85-meric
Chain n 1–25（25 aa）
Not recorded MG MAGNESIUM ION × 276 ZN ZINC ION × 8 GDP GUANOSINE-5'-DIPHOSPHATE × 1 34G emetine × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 3.30 Å
8VVP Codon sampling state obtained from Anisomycin-treated mammalian ribosomes Deposited 2024-01-31 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 80 PDB declaration: 88-meric
Chain MA 1–25（25 aa）
Not recorded MG MAGNESIUM ION × 260 ZN ZINC ION × 8 5GP GUANOSINE-5'-MONOPHOSPHATE × 1 ANM ANISOMYCIN × 1 SPD SPERMIDINE × 6 SPM SPERMINE × 2 K POTASSIUM ION × 1 GTP GUANOSINE-5'-TRIPHOSPHATE × 1 SER SERINE × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5；20 mM HEPES-KOH, pH 7.5, 100 mM KCl, 1.5 mM MgCl2, 0.5 mM Spermidine, 0.04 mM Spermine, 1 mM DTT
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 2.90 Å
8VVQ Codon sampling state of elongation inhibitor-treated mammalian ribosomes obtained from merged datasets Deposited 2024-01-31 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 80 PDB declaration: 88-meric
Chain MA 1–25（25 aa）
Not recorded MG MAGNESIUM ION × 290 ZN ZINC ION × 8 5GP GUANOSINE-5'-MONOPHOSPHATE × 1 ANM ANISOMYCIN × 1 SPD SPERMIDINE × 1 K POTASSIUM ION × 1 GTP GUANOSINE-5'-TRIPHOSPHATE × 1 SER SERINE × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5；20 mM HEPES-KOH, pH 7.5, 100 mM KCl, 1.5 mM MgCl2, 0.5 mM Spermidine, 0.04 mM Spermine, 1 mM DTT
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 2.70 Å
8VVR Post-decoding/Post-hydrolysis state obtained from Anisomycin-treated mammalian ribosomes Deposited 2024-01-31 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 80 PDB declaration: 88-meric
Chain MA 1–25（25 aa）
Not recorded MG MAGNESIUM ION × 204 ZN ZINC ION × 8 5GP GUANOSINE-5'-MONOPHOSPHATE × 1 ANM ANISOMYCIN × 1 SPD SPERMIDINE × 3 K POTASSIUM ION × 1 SER SERINE × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5；20 mM HEPES-KOH, pH 7.5, 100 mM KCl, 1.5 mM MgCl2, 0.5 mM Spermidine, 0.04 mM Spermine, 1 mM DTT
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 3.10 Å
8VVS Post-decoding post-hydrolysis state obtained from merged datasets of elongation inhibitor-treated mammalian ribosomes Deposited 2024-01-31 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 80 PDB declaration: 88-meric
Chain MA 1–25（25 aa）
Not recorded MG MAGNESIUM ION × 236 ZN ZINC ION × 8 5GP GUANOSINE-5'-MONOPHOSPHATE × 1 ANM ANISOMYCIN × 1 SPD SPERMIDINE × 4 K POTASSIUM ION × 1 SER SERINE × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5；20 mM HEPES-KOH, pH 7.5, 100 mM KCl, 1.5 mM MgCl2, 0.5 mM Spermidine, 0.04 mM Spermine, 1 mM DTT
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 3.10 Å
8VVT Mammalian ribosomes bound to Anisomycin in the rotated conformation Deposited 2024-01-31 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 80 PDB declaration: 84-meric
Chain MA 1–25（25 aa）
Not recorded MG MAGNESIUM ION × 144 ANM ANISOMYCIN × 1 SPD SPERMIDINE × 1 ZN ZINC ION × 8 GDP GUANOSINE-5'-DIPHOSPHATE × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5；20 mM HEPES-KOH, pH 7.5, 100 mM KCl, 1.5 mM MgCl2, 0.5 mM Spermidine, 0.04 mM Spermine, 1 mM DTT
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 2.90 Å
8VVU Anisomycin-bound mammalian ribosome with partially accommodated A-site tRNA Deposited 2024-01-31 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 78 PDB declaration: 86-meric
Chain MA 1–25（25 aa）
Not recorded MG MAGNESIUM ION × 102 ZN ZINC ION × 8 ANM ANISOMYCIN × 1 SPD SPERMIDINE × 1 SER SERINE × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5；20 mM HEPES-KOH, pH 7.5, 100 mM KCl, 1.5 mM MgCl2, 0.5 mM Spermidine, 0.04 mM Spermine, 1 mM DTT
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 3.80 Å
8VVV Mammalian ribosomes bound to Anisomycin in the nonrotated conformation Deposited 2024-01-31 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 79 PDB declaration: 83-meric
Chain n 1–25（25 aa）
Not recorded MG MAGNESIUM ION × 294 ZN ZINC ION × 8 GDP GUANOSINE-5'-DIPHOSPHATE × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5；20 mM HEPES-KOH, pH 7.5, 100 mM KCl, 1.5 mM MgCl2, 0.5 mM Spermidine, 0.04 mM Spermine, 1 mM DTT
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 3.10 Å
9BDL 80S ribosome with angiogenin Deposited 2024-04-12 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 75 PDB declaration: 82-meric
Chain AL41 1–25（25 aa）
Not recorded No recorded non-water small molecule ELECTRON MICROSCOPY
cryo-EM buffer pH 7
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 2.80 Å
9BDN 80S ribosome with angiogenin and tRNAAla Deposited 2024-04-12 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 77 PDB declaration: 85-meric
Chain AL41 1–25（25 aa）
Not recorded No recorded non-water small molecule ELECTRON MICROSCOPY
cryo-EM buffer pH 7
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 3.10 Å
9BDP 80S ribosome bound with angiogenin and complex of eEF1A and Ala-tRNAAla Deposited 2024-04-12 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 78 PDB declaration: 86-meric
Chain AL41 1–25（25 aa）
Not recorded No recorded non-water small molecule ELECTRON MICROSCOPY
cryo-EM buffer pH 7
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 3.70 Å
9CPA Structure of a Mammalian DHX29-bound 43S Pre-initiation Complex Deposited 2024-07-18 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 49 PDB declaration: 51-meric
Chain l 1–25（25 aa）
Not recorded No recorded non-water small molecule ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE-PROPANE
Resolution 6.00 Å
9F1B Mammalian ternary complex of a translating 80S ribosome, NAC and NatA/E Deposited 2024-04-18 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Insufficient information Heteromer；Protein × 83 PDB declaration: 89-meric
Chain Az 1–25（25 aa）
Not recorded MG MAGNESIUM ION × 420 ZN ZINC ION × 8 UNX UNKNOWN LIGAND × 306 IHP INOSITOL HEXAKISPHOSPHATE × 1 SPD SPERMIDINE × 30 SPM SPERMINE × 3 GTP GUANOSINE-5'-TRIPHOSPHATE × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.4
cryo-EM vitrification conditions Cryogen ETHANE-PROPANE
Resolution 3.01 Å
9F1C Mammalian quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatA/E Deposited 2024-04-18 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Insufficient information Heteromer；Protein × 84 PDB declaration: 90-meric
Chain Az 1–25（25 aa）
Not recorded UNX UNKNOWN LIGAND × 277 MG MAGNESIUM ION × 420 GTP GUANOSINE-5'-TRIPHOSPHATE × 1 SPD SPERMIDINE × 30 SPM SPERMINE × 3 ZN ZINC ION × 8 IHP INOSITOL HEXAKISPHOSPHATE × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.4
cryo-EM vitrification conditions Cryogen ETHANE-PROPANE
Resolution 3.78 Å
9F1D Mammalian quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatA/E-HYPK Deposited 2024-04-18 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 85 PDB declaration: 91-meric
Chain Az 1–25（25 aa）
Not recorded UNX UNKNOWN LIGAND × 295 SPD SPERMIDINE × 30 MG MAGNESIUM ION × 420 SPM SPERMINE × 3 GTP GUANOSINE-5'-TRIPHOSPHATE × 1 IHP INOSITOL HEXAKISPHOSPHATE × 1 ZN ZINC ION × 8 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.4
cryo-EM vitrification conditions Cryogen ETHANE-PROPANE
Resolution 3.26 Å
9H6Y Late-stage 48S Initiation Complex (LS48S IC) guided by the trans-RNA Deposited 2024-10-25 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 39 PDB declaration: 42-meric
Chain l 1–25（25 aa）
Not recorded SF4 IRON/SULFUR CLUSTER × 2 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.4；10 mM HEPES-KOH pH 7.4, 5 mM Mg(OAc)2, 50 mM KOAc, 10 mM NH4Cl, 2 mM DTT and Roche cOmplete protease inhibitor cocktail
cryo-EM vitrification conditions Cryogen ETHANE；The sample was incubated on the grid for 30 s and then blotted with filter paper from both sides for 1.5 s with the blot force 5
Resolution 2.90 Å
9H74 Late-stage 48S Initiation Complex with eIF3 (LS48S-eIF3 IC) guided by the trans-RNA Deposited 2024-10-25 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 48 PDB declaration: 51-meric
Chain l 1–25（25 aa）
Not recorded SF4 IRON/SULFUR CLUSTER × 2 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.4；10 mM HEPES-KOH pH 7.4, 5 mM Mg(OAc)2, 50 mM KOAc, 10 mM NH4Cl, 2 mM DTT and Roche cOmplete protease inhibitor cocktail
cryo-EM vitrification conditions Cryogen ETHANE；The sample was incubated on the grid for 30 s and then blotted with filter paper from both sides for 1.5 s with the blot force 5
Resolution 2.90 Å
9MR4 NAC: Ribosome nascent chain complex(Oxa1L) Deposited 2025-01-06 Different oligomeric state Different ligand/ion Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 78 PDB declaration: 84-meric
Chain n 1–25（25 aa）
Not recorded ZN ZINC ION × 6 MG MAGNESIUM ION × 285 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 2.65 Å
9NDP Structure of stalled ribosome and nascent chain in complex with NMT2 and NAC Deposited 2025-02-18 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Insufficient information Heteromer；Protein × 81 PDB declaration: 87-meric
Chain n 1–25（25 aa）
Not recorded MG MAGNESIUM ION × 296 ZN ZINC ION × 6 COA COENZYME A × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.7
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 2.82 Å
9OGY Megrivirus E 3' internal ribosome entry site (IRES) RNA core region bound to rabbit ribosome Deposited 2025-05-02 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 34 PDB declaration: 36-meric
Chain n 1–25（25 aa）
Not recorded ZN ZINC ION × 2 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5；20 mM Tris-HCl pH 7.5, 2 mM MgOAc2, 150 mM KCl
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 3.28 Å
9Q7Q ABCE1-eRF1-RNC-AMD1C Deposited 2025-08-25 Different oligomeric state Different ligand/ion Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 80 PDB declaration: 86-meric
Chain n 1–25（25 aa）
Not recorded MG MAGNESIUM ION × 291 ZN ZINC ION × 6 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 2.86 Å
9QQA Ternary complex of translating ribosome, NAC and NMT1 Deposited 2025-03-31 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 81 PDB declaration: 86-meric
Chain Az 1–25（25 aa）
Not recorded MG MAGNESIUM ION × 407 UNX UNKNOWN LIGAND × 187 SPD SPERMIDINE × 30 SPM SPERMINE × 3 ZN ZINC ION × 8 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.6
cryo-EM vitrification conditions Cryogen ETHANE-PROPANE
Resolution 2.80 Å
9QQB Quaternary complex of a translating ribosome, NAC, NMT1, and NatA Deposited 2025-03-31 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 84 PDB declaration: 89-meric
Chain Az 1–25（25 aa）
Not recorded SPD SPERMIDINE × 30 SPM SPERMINE × 3 MG MAGNESIUM ION × 412 UNX UNKNOWN LIGAND × 168 ZN ZINC ION × 8 IHP INOSITOL HEXAKISPHOSPHATE × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.6
cryo-EM vitrification conditions Cryogen ETHANE-PROPANE
Resolution 3.43 Å
9RHU Rabbit 80S ribosome in complex with eRF1-AAQ, stalled at the Stop codon in mutated F2A sequence Deposited 2025-06-10 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 81 PDB declaration: 88-meric
Chain l1 1–25（25 aa）
Not recorded MG MAGNESIUM ION × 367 ZN ZINC ION × 8 K POTASSIUM ION × 37 SPD SPERMIDINE × 2 GTP GUANOSINE-5'-TRIPHOSPHATE × 1 SF4 IRON/SULFUR CLUSTER × 2 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.4
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 2.65 Å
9UZK EMCV IRES captured on mammalian 40S with initiator tRNA Deposited 2025-05-16 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 34 PDB declaration: 37-meric
Chain l 1–25（25 aa）
Not recorded No recorded non-water small molecule ELECTRON MICROSCOPY
cryo-EM buffer pH 7.4；20mM HEPES, 150mM KOAc, 2mM MgCl2, 1mM DTT, 0.5mM Spermidine, 6mM GMP-PnP
cryo-EM vitrification conditions Cryogen ETHANE-PROPANE
Resolution 4.60 Å
9UZL EMCV IRES captured on mammalian 40S ribosome with initiator tRNA and eIF2 Deposited 2025-05-16 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 36 PDB declaration: 39-meric
Chain l 1–25（25 aa）
Not recorded No recorded non-water small molecule ELECTRON MICROSCOPY
cryo-EM buffer pH 7.4；20mM HEPES, 150mM KOAc, 2mM MgCl2, 1mM DTT, 0.5mM Spermidine, 6mM GMP-PnP
cryo-EM vitrification conditions Cryogen ETHANE-PROPANE
Resolution 5.01 Å
9UZM 40S ribosome without initiation factors Deposited 2025-05-16 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 34 PDB declaration: 35-meric
Chain l 1–25（25 aa）
Not recorded No recorded non-water small molecule ELECTRON MICROSCOPY
cryo-EM buffer pH 7.4；20mM HEPES, 150mM KOAc, 2mM MgCl2, 1mM DTT, 0.5mM Spermidine, 6mM GMP-PnP
cryo-EM vitrification conditions Cryogen ETHANE-PROPANE
Resolution 4.50 Å
9YPG GTPBP1*GCP*Phe-tRNA*ribosome in the GTPase activation-like state, Structure III Deposited 2025-10-14 Different oligomeric state Different ligand/ion Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 76 PDB declaration: 84-meric
Chain n 1–25（25 aa）
Not recorded SPD SPERMIDINE × 1 ZN ZINC ION × 6 GTP GUANOSINE-5'-TRIPHOSPHATE × 1 PHE PHENYLALANINE × 1 ATP ADENOSINE-5'-TRIPHOSPHATE × 2 MET METHIONINE × 1 K POTASSIUM ION × 1 GCP PHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTER × 1 MG MAGNESIUM ION × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 3.00 Å
9YPO GTPBP1*GCP*Phe-tRNA*ribosome in the open state, Structure IIa Deposited 2025-10-14 Different oligomeric state Different ligand/ion Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 76 PDB declaration: 84-meric
Chain n 1–25（25 aa）
Not recorded SPD SPERMIDINE × 1 ZN ZINC ION × 6 GTP GUANOSINE-5'-TRIPHOSPHATE × 1 PHE PHENYLALANINE × 1 ATP ADENOSINE-5'-TRIPHOSPHATE × 2 MET METHIONINE × 1 GCP PHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTER × 1 MG MAGNESIUM ION × 1 K POTASSIUM ION × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 3.00 Å
9YPS GTPBP1*GCP*Phe-tRNA*ribosome in the open state, Structure IIb Deposited 2025-10-14 Different oligomeric state Different ligand/ion Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 76 PDB declaration: 84-meric
Chain n 1–25（25 aa）
Not recorded SPD SPERMIDINE × 1 ZN ZINC ION × 6 GTP GUANOSINE-5'-TRIPHOSPHATE × 1 PHE PHENYLALANINE × 1 ATP ADENOSINE-5'-TRIPHOSPHATE × 2 MET METHIONINE × 1 K POTASSIUM ION × 1 GCP PHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTER × 1 MG MAGNESIUM ION × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 3.00 Å
9YPT GTPBP1*GCP*Phe-tRNA*ribosome in the open state, Structure IIc Deposited 2025-10-14 Different oligomeric state Different ligand/ion Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 76 PDB declaration: 84-meric
Chain n 1–25（25 aa）
Not recorded SPD SPERMIDINE × 1 ZN ZINC ION × 6 GTP GUANOSINE-5'-TRIPHOSPHATE × 1 PHE PHENYLALANINE × 1 ATP ADENOSINE-5'-TRIPHOSPHATE × 2 MET METHIONINE × 1 GCP PHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTER × 1 MG MAGNESIUM ION × 1 K POTASSIUM ION × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 3.10 Å
9YPV GTPBP1*GCP*Phe-tRNA*ribosome in the open state, Structure IId Deposited 2025-10-14 Different oligomeric state Different ligand/ion Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 76 PDB declaration: 84-meric
Chain n 1–25（25 aa）
Not recorded SPD SPERMIDINE × 1 ZN ZINC ION × 6 GTP GUANOSINE-5'-TRIPHOSPHATE × 1 PHE PHENYLALANINE × 1 ATP ADENOSINE-5'-TRIPHOSPHATE × 2 MET METHIONINE × 1 K POTASSIUM ION × 1 GCP PHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTER × 1 MG MAGNESIUM ION × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 3.00 Å
9YPW GTPBP1*GDP*Phe-tRNA*ribosome in the post-GTP hydrolysis state, Structure IV Deposited 2025-10-14 Different oligomeric state Different ligand/ion Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 76 PDB declaration: 84-meric
Chain n 1–25（25 aa）
Not recorded SPD SPERMIDINE × 1 ZN ZINC ION × 6 GTP GUANOSINE-5'-TRIPHOSPHATE × 1 PHE PHENYLALANINE × 1 ATP ADENOSINE-5'-TRIPHOSPHATE × 2 MET METHIONINE × 1 K POTASSIUM ION × 1 GDP GUANOSINE-5'-DIPHOSPHATE × 1 MG MAGNESIUM ION × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 2.90 Å
9YPY Ribosome with accommodated A-site tRNA, Structure V Deposited 2025-10-14 Different oligomeric state Different ligand/ion Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 75 PDB declaration: 83-meric
Chain n 1–25（25 aa）
Not recorded SPD SPERMIDINE × 1 ZN ZINC ION × 6 GTP GUANOSINE-5'-TRIPHOSPHATE × 1 PHE PHENYLALANINE × 1 ATP ADENOSINE-5'-TRIPHOSPHATE × 2 MET METHIONINE × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 3.00 Å
9YPZ Vacant ribosome with P-site tRNA, substate 1, Structure Ia Deposited 2025-10-14 Different oligomeric state Different ligand/ion Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 75 PDB declaration: 82-meric
Chain n 1–25（25 aa）
Not recorded SPD SPERMIDINE × 1 ZN ZINC ION × 6 ATP ADENOSINE-5'-TRIPHOSPHATE × 2 MET METHIONINE × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 2.90 Å
9YQ0 Vacant ribosome with P-site tRNA, substate 2, Structure Ib Deposited 2025-10-14 Different oligomeric state Different ligand/ion Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 75 PDB declaration: 82-meric
Chain n 1–25（25 aa）
Not recorded SPD SPERMIDINE × 1 ZN ZINC ION × 6 ATP ADENOSINE-5'-TRIPHOSPHATE × 2 MET METHIONINE × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 2.90 Å
9YQ1 Vacant ribosome with P-site tRNA, substate 3, Structure Ic Deposited 2025-10-14 Different oligomeric state Different ligand/ion Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 75 PDB declaration: 82-meric
Chain n 1–25（25 aa）
Not recorded SPD SPERMIDINE × 1 ZN ZINC ION × 6 ATP ADENOSINE-5'-TRIPHOSPHATE × 2 MET METHIONINE × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 2.90 Å

114 other PDB entries and 114 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name A0A087WNH4_RABIT
Isoform —
PDB entities 4
Chains and sequence ranges Author chain Az； PDBConstruct 1–25； UniProt 1–25

60S ribosomal protein L8

OrganismNot specified

UniProt F1NIX0

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein–RNA Heteromer Protein × 75 RNA 5 PDB declaration: 80-meric（80） Consistent with all polymer counts Chain BA； UniProt 1–257 Not recorded 28S rRNA × 1 5.8S rRNA × 1 5S rRNA × 1 60S ribosomal protein L41 × 1 （A0A087WNH4） Ribosomal protein uL3 × 1 （Q5ZJZ2） 60S ribosomal protein L4 C-terminal domain-containing protein × 1 （Q5ZII1） Large ribosomal subunit protein uL18 × 1 （P22451） 60S ribosomal protein L6 × 1 （Q8UWG7） Large ribosomal subunit protein uL30 × 1 （Q5ZJ56） Large ribosomal subunit protein eL8 × 1 （P32429） 60S ribosomal protein L9 × 1 （A0A1D5NVI1） Large ribosomal subunit protein uL16 × 1 （Q08200） 60S ribosomal protein L11 × 1 （A0A1D5P3B1） Large ribosomal subunit protein eL13 × 1 （P41125） 60S ribosomal protein L14 × 1 （Q98TF9） Ribosomal protein L15 × 1 （F1NQG5） Ribosomal protein uL13 × 1 60S ribosomal protein L17 × 1 （A0A1D5PR40） Ribosomal protein L18 × 1 Ribosomal protein L19 × 1 （Q5ZKK8） 60S ribosomal protein L18a × 1 60S ribosomal protein L21 × 1 （R4GIQ2） Large ribosomal subunit protein eL22 × 1 （Q98TF8） Large ribosomal subunit protein uL14 × 1 Ribosomal protein L24 × 1 （A0A8V0XRE7） Ribosomal protein uL23 × 1 Ribosomal protein L26 like 1 × 1 （F2Z4K6） Large ribosomal subunit protein eL27 × 1 （P61355） Ribosomal protein uL15 × 1 60S ribosomal protein L29 × 1 （A0A1L1RNZ2） Large ribosomal subunit protein eL30 × 1 （P67883） 60S ribosomal protein L31 × 1 （A0A1L1RT94） Ribosomal protein L32 × 1 （E1BVB1） 60S ribosomal protein L35a × 1 （A0A8V0YS49） 60S ribosomal protein L34 × 1 （A0A1L1S0X5） Large ribosomal subunit protein uL29 × 1 （Q98TF7） Large ribosomal subunit protein eL36 × 1 （Q98TF6） Ribosomal protein L37 × 1 （E1C810） 60S ribosomal protein L38 × 1 （E1BU66） Large ribosomal subunit protein eL39 × 1 （Q98TF5） Ubiquitin-60S ribosomal protein L40 × 1 （O42388） Ribosomal protein L36a like × 1 （A0A8V0YUB1） Large ribosomal subunit protein eL43 × 1 （P32046） 60S ribosomal protein L28 × 1 （Q5F346） 18S rRNA × 1 Small ribosomal subunit protein eS1 × 1 40S ribosomal protein S27 × 1 （A0A3Q2TV39） 40S ribosomal protein S28 × 1 （A0A3Q2U825） 40S ribosomal protein S2 × 1 （A0A8V0Z891） Small ribosomal subunit protein eS4 × 1 （P47836） Ribosomal protein eS30 × 1 40S ribosomal protein S26 × 1 （Q5ZM66） Small ribosomal subunit protein eS6 × 1 （P47838） 40S ribosomal protein S7 × 1 （F1NN16） 40S ribosomal protein S8 × 1 （F1NB02） 40S ribosomal protein S9 × 1 （B7NZS8） 40S ribosomal protein S11 × 1 （Q98TH5） Small ribosomal subunit protein uS15 × 1 （Q6ITC7） Ribosomal protein S14 × 1 （Q5ZHW8） 40S ribosomal protein S20 × 1 （F1NH93） Small ribosomal subunit protein eS21 × 1 40S ribosomal protein S15a × 1 （A0A3Q3A7P6） Small ribosomal subunit protein uS12 × 1 40S ribosomal protein S24 × 1 （F1NF89） Small ribosomal subunit protein uS2 × 1 （P50890） Ribosomal protein S16 × 1 （R4GGJ0） Ubiquitin × 1 （P79781） Ribosomal protein S5 × 1 （G1TFM5） Small ribosomal subunit protein RACK1 × 1 （P63247） 40S ribosomal protein S29 × 1 （A0A8V0Z8V3） Ribosomal protein S10 × 1 （E1C4N0） Small ribosomal subunit protein eS12 × 1 （P84175） Small ribosomal subunit protein uS19 × 1 （P62846） 40S ribosomal protein S18 × 1 （G1TPG3） 40S ribosomal protein S19 × 1 40S ribosomal protein S25 × 1 （A0A8V1A7V4） DNA-(apurinic or apyrimidinic site) lyase × 1 （F1NPA9） Phe tRNA × 1 Small ribosomal subunit protein eS17 × 1 （P08636） MG MAGNESIUM ION × 494 ZN ZINC ION × 7 ELECTRON MICROSCOPY cryo-EM buffer：pH 7.5 cryo-EM vitrification conditions：Cryogen ETHANE Resolution 2.50 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

Other PDB Difference from Current Entry 8Q7Z Assembly / Oligomeric State Construct Mutations and Modifications Ligands, Ions and Non-polymers Method and Experimental Conditions Structure Quality
8Q87 Structure of the G. gallus 80S rotated ribosome in complex with eEF2 and SERBP1 Deposited 2023-08-18 Different oligomeric state Different ligand/ion Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 80 PDB declaration: 85-meric
Chain BA 1–257（257 aa）
Not recorded MG MAGNESIUM ION × 492 ZN ZINC ION × 8 GDP GUANOSINE-5'-DIPHOSPHATE × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 2.40 Å

1 other PDB entries and 1 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name F1NIX0_CHICK
Isoform —
PDB entities 5
Chains and sequence ranges Author chain BA； PDBConstruct 1–257； UniProt 1–257

Ribosomal protein uL3

OrganismNot specified

UniProt Q5ZJZ2

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein–RNA Heteromer Protein × 75 RNA 5 PDB declaration: 80-meric（80） Consistent with all polymer counts Chain BB； UniProt 1–403 Non-standard monomer：Yes (specific site not provided by mmCIF) 28S rRNA × 1 5.8S rRNA × 1 5S rRNA × 1 60S ribosomal protein L41 × 1 （A0A087WNH4） 60S ribosomal protein L8 × 1 （F1NIX0） 60S ribosomal protein L4 C-terminal domain-containing protein × 1 （Q5ZII1） Large ribosomal subunit protein uL18 × 1 （P22451） 60S ribosomal protein L6 × 1 （Q8UWG7） Large ribosomal subunit protein uL30 × 1 （Q5ZJ56） Large ribosomal subunit protein eL8 × 1 （P32429） 60S ribosomal protein L9 × 1 （A0A1D5NVI1） Large ribosomal subunit protein uL16 × 1 （Q08200） 60S ribosomal protein L11 × 1 （A0A1D5P3B1） Large ribosomal subunit protein eL13 × 1 （P41125） 60S ribosomal protein L14 × 1 （Q98TF9） Ribosomal protein L15 × 1 （F1NQG5） Ribosomal protein uL13 × 1 60S ribosomal protein L17 × 1 （A0A1D5PR40） Ribosomal protein L18 × 1 Ribosomal protein L19 × 1 （Q5ZKK8） 60S ribosomal protein L18a × 1 60S ribosomal protein L21 × 1 （R4GIQ2） Large ribosomal subunit protein eL22 × 1 （Q98TF8） Large ribosomal subunit protein uL14 × 1 Ribosomal protein L24 × 1 （A0A8V0XRE7） Ribosomal protein uL23 × 1 Ribosomal protein L26 like 1 × 1 （F2Z4K6） Large ribosomal subunit protein eL27 × 1 （P61355） Ribosomal protein uL15 × 1 60S ribosomal protein L29 × 1 （A0A1L1RNZ2） Large ribosomal subunit protein eL30 × 1 （P67883） 60S ribosomal protein L31 × 1 （A0A1L1RT94） Ribosomal protein L32 × 1 （E1BVB1） 60S ribosomal protein L35a × 1 （A0A8V0YS49） 60S ribosomal protein L34 × 1 （A0A1L1S0X5） Large ribosomal subunit protein uL29 × 1 （Q98TF7） Large ribosomal subunit protein eL36 × 1 （Q98TF6） Ribosomal protein L37 × 1 （E1C810） 60S ribosomal protein L38 × 1 （E1BU66） Large ribosomal subunit protein eL39 × 1 （Q98TF5） Ubiquitin-60S ribosomal protein L40 × 1 （O42388） Ribosomal protein L36a like × 1 （A0A8V0YUB1） Large ribosomal subunit protein eL43 × 1 （P32046） 60S ribosomal protein L28 × 1 （Q5F346） 18S rRNA × 1 Small ribosomal subunit protein eS1 × 1 40S ribosomal protein S27 × 1 （A0A3Q2TV39） 40S ribosomal protein S28 × 1 （A0A3Q2U825） 40S ribosomal protein S2 × 1 （A0A8V0Z891） Small ribosomal subunit protein eS4 × 1 （P47836） Ribosomal protein eS30 × 1 40S ribosomal protein S26 × 1 （Q5ZM66） Small ribosomal subunit protein eS6 × 1 （P47838） 40S ribosomal protein S7 × 1 （F1NN16） 40S ribosomal protein S8 × 1 （F1NB02） 40S ribosomal protein S9 × 1 （B7NZS8） 40S ribosomal protein S11 × 1 （Q98TH5） Small ribosomal subunit protein uS15 × 1 （Q6ITC7） Ribosomal protein S14 × 1 （Q5ZHW8） 40S ribosomal protein S20 × 1 （F1NH93） Small ribosomal subunit protein eS21 × 1 40S ribosomal protein S15a × 1 （A0A3Q3A7P6） Small ribosomal subunit protein uS12 × 1 40S ribosomal protein S24 × 1 （F1NF89） Small ribosomal subunit protein uS2 × 1 （P50890） Ribosomal protein S16 × 1 （R4GGJ0） Ubiquitin × 1 （P79781） Ribosomal protein S5 × 1 （G1TFM5） Small ribosomal subunit protein RACK1 × 1 （P63247） 40S ribosomal protein S29 × 1 （A0A8V0Z8V3） Ribosomal protein S10 × 1 （E1C4N0） Small ribosomal subunit protein eS12 × 1 （P84175） Small ribosomal subunit protein uS19 × 1 （P62846） 40S ribosomal protein S18 × 1 （G1TPG3） 40S ribosomal protein S19 × 1 40S ribosomal protein S25 × 1 （A0A8V1A7V4） DNA-(apurinic or apyrimidinic site) lyase × 1 （F1NPA9） Phe tRNA × 1 Small ribosomal subunit protein eS17 × 1 （P08636） MG MAGNESIUM ION × 494 ZN ZINC ION × 7 ELECTRON MICROSCOPY cryo-EM buffer：pH 7.5 cryo-EM vitrification conditions：Cryogen ETHANE Resolution 2.50 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

Other PDB Difference from Current Entry 8Q7Z Assembly / Oligomeric State Construct Mutations and Modifications Ligands, Ions and Non-polymers Method and Experimental Conditions Structure Quality
8Q87 Structure of the G. gallus 80S rotated ribosome in complex with eEF2 and SERBP1 Deposited 2023-08-18 Different oligomeric state Different ligand/ion Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 80 PDB declaration: 85-meric
Chain BB 1–403（403 aa）
Non-standard monomer：Yes (specific site not provided by mmCIF) MG MAGNESIUM ION × 492 ZN ZINC ION × 8 GDP GUANOSINE-5'-DIPHOSPHATE × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 2.40 Å

1 other PDB entries and 1 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name Q5ZJZ2_CHICK
Isoform —
PDB entities 6
Chains and sequence ranges Author chain BB； PDBConstruct 1–403； UniProt 1–403

60S ribosomal protein L4 C-terminal domain-containing protein

OrganismNot specified

UniProt Q5ZII1

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein–RNA Heteromer Protein × 75 RNA 5 PDB declaration: 80-meric（80） Consistent with all polymer counts Chain BC； UniProt 1–421 Not recorded 28S rRNA × 1 5.8S rRNA × 1 5S rRNA × 1 60S ribosomal protein L41 × 1 （A0A087WNH4） 60S ribosomal protein L8 × 1 （F1NIX0） Ribosomal protein uL3 × 1 （Q5ZJZ2） Large ribosomal subunit protein uL18 × 1 （P22451） 60S ribosomal protein L6 × 1 （Q8UWG7） Large ribosomal subunit protein uL30 × 1 （Q5ZJ56） Large ribosomal subunit protein eL8 × 1 （P32429） 60S ribosomal protein L9 × 1 （A0A1D5NVI1） Large ribosomal subunit protein uL16 × 1 （Q08200） 60S ribosomal protein L11 × 1 （A0A1D5P3B1） Large ribosomal subunit protein eL13 × 1 （P41125） 60S ribosomal protein L14 × 1 （Q98TF9） Ribosomal protein L15 × 1 （F1NQG5） Ribosomal protein uL13 × 1 60S ribosomal protein L17 × 1 （A0A1D5PR40） Ribosomal protein L18 × 1 Ribosomal protein L19 × 1 （Q5ZKK8） 60S ribosomal protein L18a × 1 60S ribosomal protein L21 × 1 （R4GIQ2） Large ribosomal subunit protein eL22 × 1 （Q98TF8） Large ribosomal subunit protein uL14 × 1 Ribosomal protein L24 × 1 （A0A8V0XRE7） Ribosomal protein uL23 × 1 Ribosomal protein L26 like 1 × 1 （F2Z4K6） Large ribosomal subunit protein eL27 × 1 （P61355） Ribosomal protein uL15 × 1 60S ribosomal protein L29 × 1 （A0A1L1RNZ2） Large ribosomal subunit protein eL30 × 1 （P67883） 60S ribosomal protein L31 × 1 （A0A1L1RT94） Ribosomal protein L32 × 1 （E1BVB1） 60S ribosomal protein L35a × 1 （A0A8V0YS49） 60S ribosomal protein L34 × 1 （A0A1L1S0X5） Large ribosomal subunit protein uL29 × 1 （Q98TF7） Large ribosomal subunit protein eL36 × 1 （Q98TF6） Ribosomal protein L37 × 1 （E1C810） 60S ribosomal protein L38 × 1 （E1BU66） Large ribosomal subunit protein eL39 × 1 （Q98TF5） Ubiquitin-60S ribosomal protein L40 × 1 （O42388） Ribosomal protein L36a like × 1 （A0A8V0YUB1） Large ribosomal subunit protein eL43 × 1 （P32046） 60S ribosomal protein L28 × 1 （Q5F346） 18S rRNA × 1 Small ribosomal subunit protein eS1 × 1 40S ribosomal protein S27 × 1 （A0A3Q2TV39） 40S ribosomal protein S28 × 1 （A0A3Q2U825） 40S ribosomal protein S2 × 1 （A0A8V0Z891） Small ribosomal subunit protein eS4 × 1 （P47836） Ribosomal protein eS30 × 1 40S ribosomal protein S26 × 1 （Q5ZM66） Small ribosomal subunit protein eS6 × 1 （P47838） 40S ribosomal protein S7 × 1 （F1NN16） 40S ribosomal protein S8 × 1 （F1NB02） 40S ribosomal protein S9 × 1 （B7NZS8） 40S ribosomal protein S11 × 1 （Q98TH5） Small ribosomal subunit protein uS15 × 1 （Q6ITC7） Ribosomal protein S14 × 1 （Q5ZHW8） 40S ribosomal protein S20 × 1 （F1NH93） Small ribosomal subunit protein eS21 × 1 40S ribosomal protein S15a × 1 （A0A3Q3A7P6） Small ribosomal subunit protein uS12 × 1 40S ribosomal protein S24 × 1 （F1NF89） Small ribosomal subunit protein uS2 × 1 （P50890） Ribosomal protein S16 × 1 （R4GGJ0） Ubiquitin × 1 （P79781） Ribosomal protein S5 × 1 （G1TFM5） Small ribosomal subunit protein RACK1 × 1 （P63247） 40S ribosomal protein S29 × 1 （A0A8V0Z8V3） Ribosomal protein S10 × 1 （E1C4N0） Small ribosomal subunit protein eS12 × 1 （P84175） Small ribosomal subunit protein uS19 × 1 （P62846） 40S ribosomal protein S18 × 1 （G1TPG3） 40S ribosomal protein S19 × 1 40S ribosomal protein S25 × 1 （A0A8V1A7V4） DNA-(apurinic or apyrimidinic site) lyase × 1 （F1NPA9） Phe tRNA × 1 Small ribosomal subunit protein eS17 × 1 （P08636） MG MAGNESIUM ION × 494 ZN ZINC ION × 7 ELECTRON MICROSCOPY cryo-EM buffer：pH 7.5 cryo-EM vitrification conditions：Cryogen ETHANE Resolution 2.50 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

Other PDB Difference from Current Entry 8Q7Z Assembly / Oligomeric State Construct Mutations and Modifications Ligands, Ions and Non-polymers Method and Experimental Conditions Structure Quality
8Q87 Structure of the G. gallus 80S rotated ribosome in complex with eEF2 and SERBP1 Deposited 2023-08-18 Different oligomeric state Different ligand/ion Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 80 PDB declaration: 85-meric
Chain BC 1–421（421 aa）
Not recorded MG MAGNESIUM ION × 492 ZN ZINC ION × 8 GDP GUANOSINE-5'-DIPHOSPHATE × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 2.40 Å

1 other PDB entries and 1 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name Q5ZII1_CHICK
Isoform —
PDB entities 7
Chains and sequence ranges Author chain BC； PDBConstruct 1–421； UniProt 1–421

Large ribosomal subunit protein uL18

OrganismNot specified

UniProt P22451

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein–RNA Heteromer Protein × 75 RNA 5 PDB declaration: 80-meric（80） Consistent with all polymer counts Chain BD； UniProt 1–297 Not recorded 28S rRNA × 1 5.8S rRNA × 1 5S rRNA × 1 60S ribosomal protein L41 × 1 （A0A087WNH4） 60S ribosomal protein L8 × 1 （F1NIX0） Ribosomal protein uL3 × 1 （Q5ZJZ2） 60S ribosomal protein L4 C-terminal domain-containing protein × 1 （Q5ZII1） 60S ribosomal protein L6 × 1 （Q8UWG7） Large ribosomal subunit protein uL30 × 1 （Q5ZJ56） Large ribosomal subunit protein eL8 × 1 （P32429） 60S ribosomal protein L9 × 1 （A0A1D5NVI1） Large ribosomal subunit protein uL16 × 1 （Q08200） 60S ribosomal protein L11 × 1 （A0A1D5P3B1） Large ribosomal subunit protein eL13 × 1 （P41125） 60S ribosomal protein L14 × 1 （Q98TF9） Ribosomal protein L15 × 1 （F1NQG5） Ribosomal protein uL13 × 1 60S ribosomal protein L17 × 1 （A0A1D5PR40） Ribosomal protein L18 × 1 Ribosomal protein L19 × 1 （Q5ZKK8） 60S ribosomal protein L18a × 1 60S ribosomal protein L21 × 1 （R4GIQ2） Large ribosomal subunit protein eL22 × 1 （Q98TF8） Large ribosomal subunit protein uL14 × 1 Ribosomal protein L24 × 1 （A0A8V0XRE7） Ribosomal protein uL23 × 1 Ribosomal protein L26 like 1 × 1 （F2Z4K6） Large ribosomal subunit protein eL27 × 1 （P61355） Ribosomal protein uL15 × 1 60S ribosomal protein L29 × 1 （A0A1L1RNZ2） Large ribosomal subunit protein eL30 × 1 （P67883） 60S ribosomal protein L31 × 1 （A0A1L1RT94） Ribosomal protein L32 × 1 （E1BVB1） 60S ribosomal protein L35a × 1 （A0A8V0YS49） 60S ribosomal protein L34 × 1 （A0A1L1S0X5） Large ribosomal subunit protein uL29 × 1 （Q98TF7） Large ribosomal subunit protein eL36 × 1 （Q98TF6） Ribosomal protein L37 × 1 （E1C810） 60S ribosomal protein L38 × 1 （E1BU66） Large ribosomal subunit protein eL39 × 1 （Q98TF5） Ubiquitin-60S ribosomal protein L40 × 1 （O42388） Ribosomal protein L36a like × 1 （A0A8V0YUB1） Large ribosomal subunit protein eL43 × 1 （P32046） 60S ribosomal protein L28 × 1 （Q5F346） 18S rRNA × 1 Small ribosomal subunit protein eS1 × 1 40S ribosomal protein S27 × 1 （A0A3Q2TV39） 40S ribosomal protein S28 × 1 （A0A3Q2U825） 40S ribosomal protein S2 × 1 （A0A8V0Z891） Small ribosomal subunit protein eS4 × 1 （P47836） Ribosomal protein eS30 × 1 40S ribosomal protein S26 × 1 （Q5ZM66） Small ribosomal subunit protein eS6 × 1 （P47838） 40S ribosomal protein S7 × 1 （F1NN16） 40S ribosomal protein S8 × 1 （F1NB02） 40S ribosomal protein S9 × 1 （B7NZS8） 40S ribosomal protein S11 × 1 （Q98TH5） Small ribosomal subunit protein uS15 × 1 （Q6ITC7） Ribosomal protein S14 × 1 （Q5ZHW8） 40S ribosomal protein S20 × 1 （F1NH93） Small ribosomal subunit protein eS21 × 1 40S ribosomal protein S15a × 1 （A0A3Q3A7P6） Small ribosomal subunit protein uS12 × 1 40S ribosomal protein S24 × 1 （F1NF89） Small ribosomal subunit protein uS2 × 1 （P50890） Ribosomal protein S16 × 1 （R4GGJ0） Ubiquitin × 1 （P79781） Ribosomal protein S5 × 1 （G1TFM5） Small ribosomal subunit protein RACK1 × 1 （P63247） 40S ribosomal protein S29 × 1 （A0A8V0Z8V3） Ribosomal protein S10 × 1 （E1C4N0） Small ribosomal subunit protein eS12 × 1 （P84175） Small ribosomal subunit protein uS19 × 1 （P62846） 40S ribosomal protein S18 × 1 （G1TPG3） 40S ribosomal protein S19 × 1 40S ribosomal protein S25 × 1 （A0A8V1A7V4） DNA-(apurinic or apyrimidinic site) lyase × 1 （F1NPA9） Phe tRNA × 1 Small ribosomal subunit protein eS17 × 1 （P08636） MG MAGNESIUM ION × 494 ZN ZINC ION × 7 ELECTRON MICROSCOPY cryo-EM buffer：pH 7.5 cryo-EM vitrification conditions：Cryogen ETHANE Resolution 2.50 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

Other PDB Difference from Current Entry 8Q7Z Assembly / Oligomeric State Construct Mutations and Modifications Ligands, Ions and Non-polymers Method and Experimental Conditions Structure Quality
8Q87 Structure of the G. gallus 80S rotated ribosome in complex with eEF2 and SERBP1 Deposited 2023-08-18 Different oligomeric state Different ligand/ion Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 80 PDB declaration: 85-meric
Chain BD 1–297（297 aa）
Not recorded MG MAGNESIUM ION × 492 ZN ZINC ION × 8 GDP GUANOSINE-5'-DIPHOSPHATE × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 2.40 Å

1 other PDB entries and 1 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name RL5_CHICK
Isoform —
PDB entities 8
Chains and sequence ranges Author chain BD； PDBConstruct 1–297； UniProt 1–297

60S ribosomal protein L6

OrganismNot specified

UniProt Q8UWG7

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein–RNA Heteromer Protein × 75 RNA 5 PDB declaration: 80-meric（80） Consistent with all polymer counts Chain BE； UniProt 1–298 Not recorded 28S rRNA × 1 5.8S rRNA × 1 5S rRNA × 1 60S ribosomal protein L41 × 1 （A0A087WNH4） 60S ribosomal protein L8 × 1 （F1NIX0） Ribosomal protein uL3 × 1 （Q5ZJZ2） 60S ribosomal protein L4 C-terminal domain-containing protein × 1 （Q5ZII1） Large ribosomal subunit protein uL18 × 1 （P22451） Large ribosomal subunit protein uL30 × 1 （Q5ZJ56） Large ribosomal subunit protein eL8 × 1 （P32429） 60S ribosomal protein L9 × 1 （A0A1D5NVI1） Large ribosomal subunit protein uL16 × 1 （Q08200） 60S ribosomal protein L11 × 1 （A0A1D5P3B1） Large ribosomal subunit protein eL13 × 1 （P41125） 60S ribosomal protein L14 × 1 （Q98TF9） Ribosomal protein L15 × 1 （F1NQG5） Ribosomal protein uL13 × 1 60S ribosomal protein L17 × 1 （A0A1D5PR40） Ribosomal protein L18 × 1 Ribosomal protein L19 × 1 （Q5ZKK8） 60S ribosomal protein L18a × 1 60S ribosomal protein L21 × 1 （R4GIQ2） Large ribosomal subunit protein eL22 × 1 （Q98TF8） Large ribosomal subunit protein uL14 × 1 Ribosomal protein L24 × 1 （A0A8V0XRE7） Ribosomal protein uL23 × 1 Ribosomal protein L26 like 1 × 1 （F2Z4K6） Large ribosomal subunit protein eL27 × 1 （P61355） Ribosomal protein uL15 × 1 60S ribosomal protein L29 × 1 （A0A1L1RNZ2） Large ribosomal subunit protein eL30 × 1 （P67883） 60S ribosomal protein L31 × 1 （A0A1L1RT94） Ribosomal protein L32 × 1 （E1BVB1） 60S ribosomal protein L35a × 1 （A0A8V0YS49） 60S ribosomal protein L34 × 1 （A0A1L1S0X5） Large ribosomal subunit protein uL29 × 1 （Q98TF7） Large ribosomal subunit protein eL36 × 1 （Q98TF6） Ribosomal protein L37 × 1 （E1C810） 60S ribosomal protein L38 × 1 （E1BU66） Large ribosomal subunit protein eL39 × 1 （Q98TF5） Ubiquitin-60S ribosomal protein L40 × 1 （O42388） Ribosomal protein L36a like × 1 （A0A8V0YUB1） Large ribosomal subunit protein eL43 × 1 （P32046） 60S ribosomal protein L28 × 1 （Q5F346） 18S rRNA × 1 Small ribosomal subunit protein eS1 × 1 40S ribosomal protein S27 × 1 （A0A3Q2TV39） 40S ribosomal protein S28 × 1 （A0A3Q2U825） 40S ribosomal protein S2 × 1 （A0A8V0Z891） Small ribosomal subunit protein eS4 × 1 （P47836） Ribosomal protein eS30 × 1 40S ribosomal protein S26 × 1 （Q5ZM66） Small ribosomal subunit protein eS6 × 1 （P47838） 40S ribosomal protein S7 × 1 （F1NN16） 40S ribosomal protein S8 × 1 （F1NB02） 40S ribosomal protein S9 × 1 （B7NZS8） 40S ribosomal protein S11 × 1 （Q98TH5） Small ribosomal subunit protein uS15 × 1 （Q6ITC7） Ribosomal protein S14 × 1 （Q5ZHW8） 40S ribosomal protein S20 × 1 （F1NH93） Small ribosomal subunit protein eS21 × 1 40S ribosomal protein S15a × 1 （A0A3Q3A7P6） Small ribosomal subunit protein uS12 × 1 40S ribosomal protein S24 × 1 （F1NF89） Small ribosomal subunit protein uS2 × 1 （P50890） Ribosomal protein S16 × 1 （R4GGJ0） Ubiquitin × 1 （P79781） Ribosomal protein S5 × 1 （G1TFM5） Small ribosomal subunit protein RACK1 × 1 （P63247） 40S ribosomal protein S29 × 1 （A0A8V0Z8V3） Ribosomal protein S10 × 1 （E1C4N0） Small ribosomal subunit protein eS12 × 1 （P84175） Small ribosomal subunit protein uS19 × 1 （P62846） 40S ribosomal protein S18 × 1 （G1TPG3） 40S ribosomal protein S19 × 1 40S ribosomal protein S25 × 1 （A0A8V1A7V4） DNA-(apurinic or apyrimidinic site) lyase × 1 （F1NPA9） Phe tRNA × 1 Small ribosomal subunit protein eS17 × 1 （P08636） MG MAGNESIUM ION × 494 ZN ZINC ION × 7 ELECTRON MICROSCOPY cryo-EM buffer：pH 7.5 cryo-EM vitrification conditions：Cryogen ETHANE Resolution 2.50 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

Other PDB Difference from Current Entry 8Q7Z Assembly / Oligomeric State Construct Mutations and Modifications Ligands, Ions and Non-polymers Method and Experimental Conditions Structure Quality
8Q87 Structure of the G. gallus 80S rotated ribosome in complex with eEF2 and SERBP1 Deposited 2023-08-18 Different oligomeric state Different ligand/ion Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 80 PDB declaration: 85-meric
Chain BE 1–298（298 aa）
Not recorded MG MAGNESIUM ION × 492 ZN ZINC ION × 8 GDP GUANOSINE-5'-DIPHOSPHATE × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 2.40 Å

1 other PDB entries and 1 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name Q8UWG7_CHICK
Isoform —
PDB entities 9
Chains and sequence ranges Author chain BE； PDBConstruct 1–298； UniProt 1–298

Large ribosomal subunit protein uL30

OrganismNot specified

UniProt Q5ZJ56

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein–RNA Heteromer Protein × 75 RNA 5 PDB declaration: 80-meric（80） Consistent with all polymer counts Chain BF； UniProt 1–246 Not recorded 28S rRNA × 1 5.8S rRNA × 1 5S rRNA × 1 60S ribosomal protein L41 × 1 （A0A087WNH4） 60S ribosomal protein L8 × 1 （F1NIX0） Ribosomal protein uL3 × 1 （Q5ZJZ2） 60S ribosomal protein L4 C-terminal domain-containing protein × 1 （Q5ZII1） Large ribosomal subunit protein uL18 × 1 （P22451） 60S ribosomal protein L6 × 1 （Q8UWG7） Large ribosomal subunit protein eL8 × 1 （P32429） 60S ribosomal protein L9 × 1 （A0A1D5NVI1） Large ribosomal subunit protein uL16 × 1 （Q08200） 60S ribosomal protein L11 × 1 （A0A1D5P3B1） Large ribosomal subunit protein eL13 × 1 （P41125） 60S ribosomal protein L14 × 1 （Q98TF9） Ribosomal protein L15 × 1 （F1NQG5） Ribosomal protein uL13 × 1 60S ribosomal protein L17 × 1 （A0A1D5PR40） Ribosomal protein L18 × 1 Ribosomal protein L19 × 1 （Q5ZKK8） 60S ribosomal protein L18a × 1 60S ribosomal protein L21 × 1 （R4GIQ2） Large ribosomal subunit protein eL22 × 1 （Q98TF8） Large ribosomal subunit protein uL14 × 1 Ribosomal protein L24 × 1 （A0A8V0XRE7） Ribosomal protein uL23 × 1 Ribosomal protein L26 like 1 × 1 （F2Z4K6） Large ribosomal subunit protein eL27 × 1 （P61355） Ribosomal protein uL15 × 1 60S ribosomal protein L29 × 1 （A0A1L1RNZ2） Large ribosomal subunit protein eL30 × 1 （P67883） 60S ribosomal protein L31 × 1 （A0A1L1RT94） Ribosomal protein L32 × 1 （E1BVB1） 60S ribosomal protein L35a × 1 （A0A8V0YS49） 60S ribosomal protein L34 × 1 （A0A1L1S0X5） Large ribosomal subunit protein uL29 × 1 （Q98TF7） Large ribosomal subunit protein eL36 × 1 （Q98TF6） Ribosomal protein L37 × 1 （E1C810） 60S ribosomal protein L38 × 1 （E1BU66） Large ribosomal subunit protein eL39 × 1 （Q98TF5） Ubiquitin-60S ribosomal protein L40 × 1 （O42388） Ribosomal protein L36a like × 1 （A0A8V0YUB1） Large ribosomal subunit protein eL43 × 1 （P32046） 60S ribosomal protein L28 × 1 （Q5F346） 18S rRNA × 1 Small ribosomal subunit protein eS1 × 1 40S ribosomal protein S27 × 1 （A0A3Q2TV39） 40S ribosomal protein S28 × 1 （A0A3Q2U825） 40S ribosomal protein S2 × 1 （A0A8V0Z891） Small ribosomal subunit protein eS4 × 1 （P47836） Ribosomal protein eS30 × 1 40S ribosomal protein S26 × 1 （Q5ZM66） Small ribosomal subunit protein eS6 × 1 （P47838） 40S ribosomal protein S7 × 1 （F1NN16） 40S ribosomal protein S8 × 1 （F1NB02） 40S ribosomal protein S9 × 1 （B7NZS8） 40S ribosomal protein S11 × 1 （Q98TH5） Small ribosomal subunit protein uS15 × 1 （Q6ITC7） Ribosomal protein S14 × 1 （Q5ZHW8） 40S ribosomal protein S20 × 1 （F1NH93） Small ribosomal subunit protein eS21 × 1 40S ribosomal protein S15a × 1 （A0A3Q3A7P6） Small ribosomal subunit protein uS12 × 1 40S ribosomal protein S24 × 1 （F1NF89） Small ribosomal subunit protein uS2 × 1 （P50890） Ribosomal protein S16 × 1 （R4GGJ0） Ubiquitin × 1 （P79781） Ribosomal protein S5 × 1 （G1TFM5） Small ribosomal subunit protein RACK1 × 1 （P63247） 40S ribosomal protein S29 × 1 （A0A8V0Z8V3） Ribosomal protein S10 × 1 （E1C4N0） Small ribosomal subunit protein eS12 × 1 （P84175） Small ribosomal subunit protein uS19 × 1 （P62846） 40S ribosomal protein S18 × 1 （G1TPG3） 40S ribosomal protein S19 × 1 40S ribosomal protein S25 × 1 （A0A8V1A7V4） DNA-(apurinic or apyrimidinic site) lyase × 1 （F1NPA9） Phe tRNA × 1 Small ribosomal subunit protein eS17 × 1 （P08636） MG MAGNESIUM ION × 494 ZN ZINC ION × 7 ELECTRON MICROSCOPY cryo-EM buffer：pH 7.5 cryo-EM vitrification conditions：Cryogen ETHANE Resolution 2.50 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

Other PDB Difference from Current Entry 8Q7Z Assembly / Oligomeric State Construct Mutations and Modifications Ligands, Ions and Non-polymers Method and Experimental Conditions Structure Quality
8Q87 Structure of the G. gallus 80S rotated ribosome in complex with eEF2 and SERBP1 Deposited 2023-08-18 Different oligomeric state Different ligand/ion Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 80 PDB declaration: 85-meric
Chain BF 1–246（246 aa）
Not recorded MG MAGNESIUM ION × 492 ZN ZINC ION × 8 GDP GUANOSINE-5'-DIPHOSPHATE × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 2.40 Å

1 other PDB entries and 1 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name RL7_CHICK
Isoform —
PDB entities 10
Chains and sequence ranges Author chain BF； PDBConstruct 1–246； UniProt 1–246

Large ribosomal subunit protein eL8

OrganismNot specified

UniProt P32429

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein–RNA Heteromer Protein × 75 RNA 5 PDB declaration: 80-meric（80） Consistent with all polymer counts Chain BG； UniProt 1–266 Not recorded 28S rRNA × 1 5.8S rRNA × 1 5S rRNA × 1 60S ribosomal protein L41 × 1 （A0A087WNH4） 60S ribosomal protein L8 × 1 （F1NIX0） Ribosomal protein uL3 × 1 （Q5ZJZ2） 60S ribosomal protein L4 C-terminal domain-containing protein × 1 （Q5ZII1） Large ribosomal subunit protein uL18 × 1 （P22451） 60S ribosomal protein L6 × 1 （Q8UWG7） Large ribosomal subunit protein uL30 × 1 （Q5ZJ56） 60S ribosomal protein L9 × 1 （A0A1D5NVI1） Large ribosomal subunit protein uL16 × 1 （Q08200） 60S ribosomal protein L11 × 1 （A0A1D5P3B1） Large ribosomal subunit protein eL13 × 1 （P41125） 60S ribosomal protein L14 × 1 （Q98TF9） Ribosomal protein L15 × 1 （F1NQG5） Ribosomal protein uL13 × 1 60S ribosomal protein L17 × 1 （A0A1D5PR40） Ribosomal protein L18 × 1 Ribosomal protein L19 × 1 （Q5ZKK8） 60S ribosomal protein L18a × 1 60S ribosomal protein L21 × 1 （R4GIQ2） Large ribosomal subunit protein eL22 × 1 （Q98TF8） Large ribosomal subunit protein uL14 × 1 Ribosomal protein L24 × 1 （A0A8V0XRE7） Ribosomal protein uL23 × 1 Ribosomal protein L26 like 1 × 1 （F2Z4K6） Large ribosomal subunit protein eL27 × 1 （P61355） Ribosomal protein uL15 × 1 60S ribosomal protein L29 × 1 （A0A1L1RNZ2） Large ribosomal subunit protein eL30 × 1 （P67883） 60S ribosomal protein L31 × 1 （A0A1L1RT94） Ribosomal protein L32 × 1 （E1BVB1） 60S ribosomal protein L35a × 1 （A0A8V0YS49） 60S ribosomal protein L34 × 1 （A0A1L1S0X5） Large ribosomal subunit protein uL29 × 1 （Q98TF7） Large ribosomal subunit protein eL36 × 1 （Q98TF6） Ribosomal protein L37 × 1 （E1C810） 60S ribosomal protein L38 × 1 （E1BU66） Large ribosomal subunit protein eL39 × 1 （Q98TF5） Ubiquitin-60S ribosomal protein L40 × 1 （O42388） Ribosomal protein L36a like × 1 （A0A8V0YUB1） Large ribosomal subunit protein eL43 × 1 （P32046） 60S ribosomal protein L28 × 1 （Q5F346） 18S rRNA × 1 Small ribosomal subunit protein eS1 × 1 40S ribosomal protein S27 × 1 （A0A3Q2TV39） 40S ribosomal protein S28 × 1 （A0A3Q2U825） 40S ribosomal protein S2 × 1 （A0A8V0Z891） Small ribosomal subunit protein eS4 × 1 （P47836） Ribosomal protein eS30 × 1 40S ribosomal protein S26 × 1 （Q5ZM66） Small ribosomal subunit protein eS6 × 1 （P47838） 40S ribosomal protein S7 × 1 （F1NN16） 40S ribosomal protein S8 × 1 （F1NB02） 40S ribosomal protein S9 × 1 （B7NZS8） 40S ribosomal protein S11 × 1 （Q98TH5） Small ribosomal subunit protein uS15 × 1 （Q6ITC7） Ribosomal protein S14 × 1 （Q5ZHW8） 40S ribosomal protein S20 × 1 （F1NH93） Small ribosomal subunit protein eS21 × 1 40S ribosomal protein S15a × 1 （A0A3Q3A7P6） Small ribosomal subunit protein uS12 × 1 40S ribosomal protein S24 × 1 （F1NF89） Small ribosomal subunit protein uS2 × 1 （P50890） Ribosomal protein S16 × 1 （R4GGJ0） Ubiquitin × 1 （P79781） Ribosomal protein S5 × 1 （G1TFM5） Small ribosomal subunit protein RACK1 × 1 （P63247） 40S ribosomal protein S29 × 1 （A0A8V0Z8V3） Ribosomal protein S10 × 1 （E1C4N0） Small ribosomal subunit protein eS12 × 1 （P84175） Small ribosomal subunit protein uS19 × 1 （P62846） 40S ribosomal protein S18 × 1 （G1TPG3） 40S ribosomal protein S19 × 1 40S ribosomal protein S25 × 1 （A0A8V1A7V4） DNA-(apurinic or apyrimidinic site) lyase × 1 （F1NPA9） Phe tRNA × 1 Small ribosomal subunit protein eS17 × 1 （P08636） MG MAGNESIUM ION × 494 ZN ZINC ION × 7 ELECTRON MICROSCOPY cryo-EM buffer：pH 7.5 cryo-EM vitrification conditions：Cryogen ETHANE Resolution 2.50 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

Other PDB Difference from Current Entry 8Q7Z Assembly / Oligomeric State Construct Mutations and Modifications Ligands, Ions and Non-polymers Method and Experimental Conditions Structure Quality
8Q87 Structure of the G. gallus 80S rotated ribosome in complex with eEF2 and SERBP1 Deposited 2023-08-18 Different oligomeric state Different ligand/ion Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 80 PDB declaration: 85-meric
Chain BG 1–266（266 aa）
Not recorded MG MAGNESIUM ION × 492 ZN ZINC ION × 8 GDP GUANOSINE-5'-DIPHOSPHATE × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 2.40 Å

1 other PDB entries and 1 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name RL7A_CHICK
Isoform —
PDB entities 11
Chains and sequence ranges Author chain BG； PDBConstruct 1–266； UniProt 1–266

60S ribosomal protein L9

OrganismNot specified

UniProt A0A1D5NVI1

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein–RNA Heteromer Protein × 75 RNA 5 PDB declaration: 80-meric（80） Consistent with all polymer counts Chain BH； UniProt 1–192 Not recorded 28S rRNA × 1 5.8S rRNA × 1 5S rRNA × 1 60S ribosomal protein L41 × 1 （A0A087WNH4） 60S ribosomal protein L8 × 1 （F1NIX0） Ribosomal protein uL3 × 1 （Q5ZJZ2） 60S ribosomal protein L4 C-terminal domain-containing protein × 1 （Q5ZII1） Large ribosomal subunit protein uL18 × 1 （P22451） 60S ribosomal protein L6 × 1 （Q8UWG7） Large ribosomal subunit protein uL30 × 1 （Q5ZJ56） Large ribosomal subunit protein eL8 × 1 （P32429） Large ribosomal subunit protein uL16 × 1 （Q08200） 60S ribosomal protein L11 × 1 （A0A1D5P3B1） Large ribosomal subunit protein eL13 × 1 （P41125） 60S ribosomal protein L14 × 1 （Q98TF9） Ribosomal protein L15 × 1 （F1NQG5） Ribosomal protein uL13 × 1 60S ribosomal protein L17 × 1 （A0A1D5PR40） Ribosomal protein L18 × 1 Ribosomal protein L19 × 1 （Q5ZKK8） 60S ribosomal protein L18a × 1 60S ribosomal protein L21 × 1 （R4GIQ2） Large ribosomal subunit protein eL22 × 1 （Q98TF8） Large ribosomal subunit protein uL14 × 1 Ribosomal protein L24 × 1 （A0A8V0XRE7） Ribosomal protein uL23 × 1 Ribosomal protein L26 like 1 × 1 （F2Z4K6） Large ribosomal subunit protein eL27 × 1 （P61355） Ribosomal protein uL15 × 1 60S ribosomal protein L29 × 1 （A0A1L1RNZ2） Large ribosomal subunit protein eL30 × 1 （P67883） 60S ribosomal protein L31 × 1 （A0A1L1RT94） Ribosomal protein L32 × 1 （E1BVB1） 60S ribosomal protein L35a × 1 （A0A8V0YS49） 60S ribosomal protein L34 × 1 （A0A1L1S0X5） Large ribosomal subunit protein uL29 × 1 （Q98TF7） Large ribosomal subunit protein eL36 × 1 （Q98TF6） Ribosomal protein L37 × 1 （E1C810） 60S ribosomal protein L38 × 1 （E1BU66） Large ribosomal subunit protein eL39 × 1 （Q98TF5） Ubiquitin-60S ribosomal protein L40 × 1 （O42388） Ribosomal protein L36a like × 1 （A0A8V0YUB1） Large ribosomal subunit protein eL43 × 1 （P32046） 60S ribosomal protein L28 × 1 （Q5F346） 18S rRNA × 1 Small ribosomal subunit protein eS1 × 1 40S ribosomal protein S27 × 1 （A0A3Q2TV39） 40S ribosomal protein S28 × 1 （A0A3Q2U825） 40S ribosomal protein S2 × 1 （A0A8V0Z891） Small ribosomal subunit protein eS4 × 1 （P47836） Ribosomal protein eS30 × 1 40S ribosomal protein S26 × 1 （Q5ZM66） Small ribosomal subunit protein eS6 × 1 （P47838） 40S ribosomal protein S7 × 1 （F1NN16） 40S ribosomal protein S8 × 1 （F1NB02） 40S ribosomal protein S9 × 1 （B7NZS8） 40S ribosomal protein S11 × 1 （Q98TH5） Small ribosomal subunit protein uS15 × 1 （Q6ITC7） Ribosomal protein S14 × 1 （Q5ZHW8） 40S ribosomal protein S20 × 1 （F1NH93） Small ribosomal subunit protein eS21 × 1 40S ribosomal protein S15a × 1 （A0A3Q3A7P6） Small ribosomal subunit protein uS12 × 1 40S ribosomal protein S24 × 1 （F1NF89） Small ribosomal subunit protein uS2 × 1 （P50890） Ribosomal protein S16 × 1 （R4GGJ0） Ubiquitin × 1 （P79781） Ribosomal protein S5 × 1 （G1TFM5） Small ribosomal subunit protein RACK1 × 1 （P63247） 40S ribosomal protein S29 × 1 （A0A8V0Z8V3） Ribosomal protein S10 × 1 （E1C4N0） Small ribosomal subunit protein eS12 × 1 （P84175） Small ribosomal subunit protein uS19 × 1 （P62846） 40S ribosomal protein S18 × 1 （G1TPG3） 40S ribosomal protein S19 × 1 40S ribosomal protein S25 × 1 （A0A8V1A7V4） DNA-(apurinic or apyrimidinic site) lyase × 1 （F1NPA9） Phe tRNA × 1 Small ribosomal subunit protein eS17 × 1 （P08636） MG MAGNESIUM ION × 494 ZN ZINC ION × 7 ELECTRON MICROSCOPY cryo-EM buffer：pH 7.5 cryo-EM vitrification conditions：Cryogen ETHANE Resolution 2.50 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

Other PDB Difference from Current Entry 8Q7Z Assembly / Oligomeric State Construct Mutations and Modifications Ligands, Ions and Non-polymers Method and Experimental Conditions Structure Quality
8Q87 Structure of the G. gallus 80S rotated ribosome in complex with eEF2 and SERBP1 Deposited 2023-08-18 Different oligomeric state Different ligand/ion Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 80 PDB declaration: 85-meric
Chain BH 1–192（192 aa）
Not recorded MG MAGNESIUM ION × 492 ZN ZINC ION × 8 GDP GUANOSINE-5'-DIPHOSPHATE × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 2.40 Å

1 other PDB entries and 1 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name A0A1D5NVI1_CHICK
Isoform —
PDB entities 12
Chains and sequence ranges Author chain BH； PDBConstruct 1–192； UniProt 1–192

Large ribosomal subunit protein uL16

OrganismNot specified

UniProt Q08200

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein–RNA Heteromer Protein × 75 RNA 5 PDB declaration: 80-meric（80） Consistent with all polymer counts Chain BI； UniProt 1–210 Not recorded 28S rRNA × 1 5.8S rRNA × 1 5S rRNA × 1 60S ribosomal protein L41 × 1 （A0A087WNH4） 60S ribosomal protein L8 × 1 （F1NIX0） Ribosomal protein uL3 × 1 （Q5ZJZ2） 60S ribosomal protein L4 C-terminal domain-containing protein × 1 （Q5ZII1） Large ribosomal subunit protein uL18 × 1 （P22451） 60S ribosomal protein L6 × 1 （Q8UWG7） Large ribosomal subunit protein uL30 × 1 （Q5ZJ56） Large ribosomal subunit protein eL8 × 1 （P32429） 60S ribosomal protein L9 × 1 （A0A1D5NVI1） 60S ribosomal protein L11 × 1 （A0A1D5P3B1） Large ribosomal subunit protein eL13 × 1 （P41125） 60S ribosomal protein L14 × 1 （Q98TF9） Ribosomal protein L15 × 1 （F1NQG5） Ribosomal protein uL13 × 1 60S ribosomal protein L17 × 1 （A0A1D5PR40） Ribosomal protein L18 × 1 Ribosomal protein L19 × 1 （Q5ZKK8） 60S ribosomal protein L18a × 1 60S ribosomal protein L21 × 1 （R4GIQ2） Large ribosomal subunit protein eL22 × 1 （Q98TF8） Large ribosomal subunit protein uL14 × 1 Ribosomal protein L24 × 1 （A0A8V0XRE7） Ribosomal protein uL23 × 1 Ribosomal protein L26 like 1 × 1 （F2Z4K6） Large ribosomal subunit protein eL27 × 1 （P61355） Ribosomal protein uL15 × 1 60S ribosomal protein L29 × 1 （A0A1L1RNZ2） Large ribosomal subunit protein eL30 × 1 （P67883） 60S ribosomal protein L31 × 1 （A0A1L1RT94） Ribosomal protein L32 × 1 （E1BVB1） 60S ribosomal protein L35a × 1 （A0A8V0YS49） 60S ribosomal protein L34 × 1 （A0A1L1S0X5） Large ribosomal subunit protein uL29 × 1 （Q98TF7） Large ribosomal subunit protein eL36 × 1 （Q98TF6） Ribosomal protein L37 × 1 （E1C810） 60S ribosomal protein L38 × 1 （E1BU66） Large ribosomal subunit protein eL39 × 1 （Q98TF5） Ubiquitin-60S ribosomal protein L40 × 1 （O42388） Ribosomal protein L36a like × 1 （A0A8V0YUB1） Large ribosomal subunit protein eL43 × 1 （P32046） 60S ribosomal protein L28 × 1 （Q5F346） 18S rRNA × 1 Small ribosomal subunit protein eS1 × 1 40S ribosomal protein S27 × 1 （A0A3Q2TV39） 40S ribosomal protein S28 × 1 （A0A3Q2U825） 40S ribosomal protein S2 × 1 （A0A8V0Z891） Small ribosomal subunit protein eS4 × 1 （P47836） Ribosomal protein eS30 × 1 40S ribosomal protein S26 × 1 （Q5ZM66） Small ribosomal subunit protein eS6 × 1 （P47838） 40S ribosomal protein S7 × 1 （F1NN16） 40S ribosomal protein S8 × 1 （F1NB02） 40S ribosomal protein S9 × 1 （B7NZS8） 40S ribosomal protein S11 × 1 （Q98TH5） Small ribosomal subunit protein uS15 × 1 （Q6ITC7） Ribosomal protein S14 × 1 （Q5ZHW8） 40S ribosomal protein S20 × 1 （F1NH93） Small ribosomal subunit protein eS21 × 1 40S ribosomal protein S15a × 1 （A0A3Q3A7P6） Small ribosomal subunit protein uS12 × 1 40S ribosomal protein S24 × 1 （F1NF89） Small ribosomal subunit protein uS2 × 1 （P50890） Ribosomal protein S16 × 1 （R4GGJ0） Ubiquitin × 1 （P79781） Ribosomal protein S5 × 1 （G1TFM5） Small ribosomal subunit protein RACK1 × 1 （P63247） 40S ribosomal protein S29 × 1 （A0A8V0Z8V3） Ribosomal protein S10 × 1 （E1C4N0） Small ribosomal subunit protein eS12 × 1 （P84175） Small ribosomal subunit protein uS19 × 1 （P62846） 40S ribosomal protein S18 × 1 （G1TPG3） 40S ribosomal protein S19 × 1 40S ribosomal protein S25 × 1 （A0A8V1A7V4） DNA-(apurinic or apyrimidinic site) lyase × 1 （F1NPA9） Phe tRNA × 1 Small ribosomal subunit protein eS17 × 1 （P08636） MG MAGNESIUM ION × 494 ZN ZINC ION × 7 ELECTRON MICROSCOPY cryo-EM buffer：pH 7.5 cryo-EM vitrification conditions：Cryogen ETHANE Resolution 2.50 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

Other PDB Difference from Current Entry 8Q7Z Assembly / Oligomeric State Construct Mutations and Modifications Ligands, Ions and Non-polymers Method and Experimental Conditions Structure Quality
8Q87 Structure of the G. gallus 80S rotated ribosome in complex with eEF2 and SERBP1 Deposited 2023-08-18 Different oligomeric state Different ligand/ion Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 80 PDB declaration: 85-meric
Chain BI 1–210（210 aa）
Not recorded MG MAGNESIUM ION × 492 ZN ZINC ION × 8 GDP GUANOSINE-5'-DIPHOSPHATE × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 2.40 Å

1 other PDB entries and 1 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name RL10_CHICK
Isoform —
PDB entities 13
Chains and sequence ranges Author chain BI； PDBConstruct 5–214； UniProt 1–210

60S ribosomal protein L11

OrganismNot specified

UniProt A0A1D5P3B1

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein–RNA Heteromer Protein × 75 RNA 5 PDB declaration: 80-meric（80） Consistent with all polymer counts Chain BJ； UniProt 1–178 Not recorded 28S rRNA × 1 5.8S rRNA × 1 5S rRNA × 1 60S ribosomal protein L41 × 1 （A0A087WNH4） 60S ribosomal protein L8 × 1 （F1NIX0） Ribosomal protein uL3 × 1 （Q5ZJZ2） 60S ribosomal protein L4 C-terminal domain-containing protein × 1 （Q5ZII1） Large ribosomal subunit protein uL18 × 1 （P22451） 60S ribosomal protein L6 × 1 （Q8UWG7） Large ribosomal subunit protein uL30 × 1 （Q5ZJ56） Large ribosomal subunit protein eL8 × 1 （P32429） 60S ribosomal protein L9 × 1 （A0A1D5NVI1） Large ribosomal subunit protein uL16 × 1 （Q08200） Large ribosomal subunit protein eL13 × 1 （P41125） 60S ribosomal protein L14 × 1 （Q98TF9） Ribosomal protein L15 × 1 （F1NQG5） Ribosomal protein uL13 × 1 60S ribosomal protein L17 × 1 （A0A1D5PR40） Ribosomal protein L18 × 1 Ribosomal protein L19 × 1 （Q5ZKK8） 60S ribosomal protein L18a × 1 60S ribosomal protein L21 × 1 （R4GIQ2） Large ribosomal subunit protein eL22 × 1 （Q98TF8） Large ribosomal subunit protein uL14 × 1 Ribosomal protein L24 × 1 （A0A8V0XRE7） Ribosomal protein uL23 × 1 Ribosomal protein L26 like 1 × 1 （F2Z4K6） Large ribosomal subunit protein eL27 × 1 （P61355） Ribosomal protein uL15 × 1 60S ribosomal protein L29 × 1 （A0A1L1RNZ2） Large ribosomal subunit protein eL30 × 1 （P67883） 60S ribosomal protein L31 × 1 （A0A1L1RT94） Ribosomal protein L32 × 1 （E1BVB1） 60S ribosomal protein L35a × 1 （A0A8V0YS49） 60S ribosomal protein L34 × 1 （A0A1L1S0X5） Large ribosomal subunit protein uL29 × 1 （Q98TF7） Large ribosomal subunit protein eL36 × 1 （Q98TF6） Ribosomal protein L37 × 1 （E1C810） 60S ribosomal protein L38 × 1 （E1BU66） Large ribosomal subunit protein eL39 × 1 （Q98TF5） Ubiquitin-60S ribosomal protein L40 × 1 （O42388） Ribosomal protein L36a like × 1 （A0A8V0YUB1） Large ribosomal subunit protein eL43 × 1 （P32046） 60S ribosomal protein L28 × 1 （Q5F346） 18S rRNA × 1 Small ribosomal subunit protein eS1 × 1 40S ribosomal protein S27 × 1 （A0A3Q2TV39） 40S ribosomal protein S28 × 1 （A0A3Q2U825） 40S ribosomal protein S2 × 1 （A0A8V0Z891） Small ribosomal subunit protein eS4 × 1 （P47836） Ribosomal protein eS30 × 1 40S ribosomal protein S26 × 1 （Q5ZM66） Small ribosomal subunit protein eS6 × 1 （P47838） 40S ribosomal protein S7 × 1 （F1NN16） 40S ribosomal protein S8 × 1 （F1NB02） 40S ribosomal protein S9 × 1 （B7NZS8） 40S ribosomal protein S11 × 1 （Q98TH5） Small ribosomal subunit protein uS15 × 1 （Q6ITC7） Ribosomal protein S14 × 1 （Q5ZHW8） 40S ribosomal protein S20 × 1 （F1NH93） Small ribosomal subunit protein eS21 × 1 40S ribosomal protein S15a × 1 （A0A3Q3A7P6） Small ribosomal subunit protein uS12 × 1 40S ribosomal protein S24 × 1 （F1NF89） Small ribosomal subunit protein uS2 × 1 （P50890） Ribosomal protein S16 × 1 （R4GGJ0） Ubiquitin × 1 （P79781） Ribosomal protein S5 × 1 （G1TFM5） Small ribosomal subunit protein RACK1 × 1 （P63247） 40S ribosomal protein S29 × 1 （A0A8V0Z8V3） Ribosomal protein S10 × 1 （E1C4N0） Small ribosomal subunit protein eS12 × 1 （P84175） Small ribosomal subunit protein uS19 × 1 （P62846） 40S ribosomal protein S18 × 1 （G1TPG3） 40S ribosomal protein S19 × 1 40S ribosomal protein S25 × 1 （A0A8V1A7V4） DNA-(apurinic or apyrimidinic site) lyase × 1 （F1NPA9） Phe tRNA × 1 Small ribosomal subunit protein eS17 × 1 （P08636） MG MAGNESIUM ION × 494 ZN ZINC ION × 7 ELECTRON MICROSCOPY cryo-EM buffer：pH 7.5 cryo-EM vitrification conditions：Cryogen ETHANE Resolution 2.50 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

Other PDB Difference from Current Entry 8Q7Z Assembly / Oligomeric State Construct Mutations and Modifications Ligands, Ions and Non-polymers Method and Experimental Conditions Structure Quality
8Q87 Structure of the G. gallus 80S rotated ribosome in complex with eEF2 and SERBP1 Deposited 2023-08-18 Different oligomeric state Different ligand/ion Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 80 PDB declaration: 85-meric
Chain BJ 1–178（178 aa）
Not recorded MG MAGNESIUM ION × 492 ZN ZINC ION × 8 GDP GUANOSINE-5'-DIPHOSPHATE × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 2.40 Å

1 other PDB entries and 1 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name A0A1D5P3B1_CHICK
Isoform —
PDB entities 14
Chains and sequence ranges Author chain BJ； PDBConstruct 1–178； UniProt 1–178

Large ribosomal subunit protein eL13

OrganismNot specified

UniProt P41125

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein–RNA Heteromer Protein × 75 RNA 5 PDB declaration: 80-meric（80） Consistent with all polymer counts Chain BL； UniProt 1–211 Not recorded 28S rRNA × 1 5.8S rRNA × 1 5S rRNA × 1 60S ribosomal protein L41 × 1 （A0A087WNH4） 60S ribosomal protein L8 × 1 （F1NIX0） Ribosomal protein uL3 × 1 （Q5ZJZ2） 60S ribosomal protein L4 C-terminal domain-containing protein × 1 （Q5ZII1） Large ribosomal subunit protein uL18 × 1 （P22451） 60S ribosomal protein L6 × 1 （Q8UWG7） Large ribosomal subunit protein uL30 × 1 （Q5ZJ56） Large ribosomal subunit protein eL8 × 1 （P32429） 60S ribosomal protein L9 × 1 （A0A1D5NVI1） Large ribosomal subunit protein uL16 × 1 （Q08200） 60S ribosomal protein L11 × 1 （A0A1D5P3B1） 60S ribosomal protein L14 × 1 （Q98TF9） Ribosomal protein L15 × 1 （F1NQG5） Ribosomal protein uL13 × 1 60S ribosomal protein L17 × 1 （A0A1D5PR40） Ribosomal protein L18 × 1 Ribosomal protein L19 × 1 （Q5ZKK8） 60S ribosomal protein L18a × 1 60S ribosomal protein L21 × 1 （R4GIQ2） Large ribosomal subunit protein eL22 × 1 （Q98TF8） Large ribosomal subunit protein uL14 × 1 Ribosomal protein L24 × 1 （A0A8V0XRE7） Ribosomal protein uL23 × 1 Ribosomal protein L26 like 1 × 1 （F2Z4K6） Large ribosomal subunit protein eL27 × 1 （P61355） Ribosomal protein uL15 × 1 60S ribosomal protein L29 × 1 （A0A1L1RNZ2） Large ribosomal subunit protein eL30 × 1 （P67883） 60S ribosomal protein L31 × 1 （A0A1L1RT94） Ribosomal protein L32 × 1 （E1BVB1） 60S ribosomal protein L35a × 1 （A0A8V0YS49） 60S ribosomal protein L34 × 1 （A0A1L1S0X5） Large ribosomal subunit protein uL29 × 1 （Q98TF7） Large ribosomal subunit protein eL36 × 1 （Q98TF6） Ribosomal protein L37 × 1 （E1C810） 60S ribosomal protein L38 × 1 （E1BU66） Large ribosomal subunit protein eL39 × 1 （Q98TF5） Ubiquitin-60S ribosomal protein L40 × 1 （O42388） Ribosomal protein L36a like × 1 （A0A8V0YUB1） Large ribosomal subunit protein eL43 × 1 （P32046） 60S ribosomal protein L28 × 1 （Q5F346） 18S rRNA × 1 Small ribosomal subunit protein eS1 × 1 40S ribosomal protein S27 × 1 （A0A3Q2TV39） 40S ribosomal protein S28 × 1 （A0A3Q2U825） 40S ribosomal protein S2 × 1 （A0A8V0Z891） Small ribosomal subunit protein eS4 × 1 （P47836） Ribosomal protein eS30 × 1 40S ribosomal protein S26 × 1 （Q5ZM66） Small ribosomal subunit protein eS6 × 1 （P47838） 40S ribosomal protein S7 × 1 （F1NN16） 40S ribosomal protein S8 × 1 （F1NB02） 40S ribosomal protein S9 × 1 （B7NZS8） 40S ribosomal protein S11 × 1 （Q98TH5） Small ribosomal subunit protein uS15 × 1 （Q6ITC7） Ribosomal protein S14 × 1 （Q5ZHW8） 40S ribosomal protein S20 × 1 （F1NH93） Small ribosomal subunit protein eS21 × 1 40S ribosomal protein S15a × 1 （A0A3Q3A7P6） Small ribosomal subunit protein uS12 × 1 40S ribosomal protein S24 × 1 （F1NF89） Small ribosomal subunit protein uS2 × 1 （P50890） Ribosomal protein S16 × 1 （R4GGJ0） Ubiquitin × 1 （P79781） Ribosomal protein S5 × 1 （G1TFM5） Small ribosomal subunit protein RACK1 × 1 （P63247） 40S ribosomal protein S29 × 1 （A0A8V0Z8V3） Ribosomal protein S10 × 1 （E1C4N0） Small ribosomal subunit protein eS12 × 1 （P84175） Small ribosomal subunit protein uS19 × 1 （P62846） 40S ribosomal protein S18 × 1 （G1TPG3） 40S ribosomal protein S19 × 1 40S ribosomal protein S25 × 1 （A0A8V1A7V4） DNA-(apurinic or apyrimidinic site) lyase × 1 （F1NPA9） Phe tRNA × 1 Small ribosomal subunit protein eS17 × 1 （P08636） MG MAGNESIUM ION × 494 ZN ZINC ION × 7 ELECTRON MICROSCOPY cryo-EM buffer：pH 7.5 cryo-EM vitrification conditions：Cryogen ETHANE Resolution 2.50 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

Other PDB Difference from Current Entry 8Q7Z Assembly / Oligomeric State Construct Mutations and Modifications Ligands, Ions and Non-polymers Method and Experimental Conditions Structure Quality
8Q87 Structure of the G. gallus 80S rotated ribosome in complex with eEF2 and SERBP1 Deposited 2023-08-18 Different oligomeric state Different ligand/ion Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 80 PDB declaration: 85-meric
Chain BL 1–211（211 aa）
Not recorded MG MAGNESIUM ION × 492 ZN ZINC ION × 8 GDP GUANOSINE-5'-DIPHOSPHATE × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 2.40 Å

1 other PDB entries and 1 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name RL13_CHICK
Isoform —
PDB entities 15
Chains and sequence ranges Author chain BL； PDBConstruct 1–211； UniProt 1–211

60S ribosomal protein L14

OrganismNot specified

UniProt Q98TF9

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein–RNA Heteromer Protein × 75 RNA 5 PDB declaration: 80-meric（80） Consistent with all polymer counts Chain BM； UniProt 1–131 Not recorded 28S rRNA × 1 5.8S rRNA × 1 5S rRNA × 1 60S ribosomal protein L41 × 1 （A0A087WNH4） 60S ribosomal protein L8 × 1 （F1NIX0） Ribosomal protein uL3 × 1 （Q5ZJZ2） 60S ribosomal protein L4 C-terminal domain-containing protein × 1 （Q5ZII1） Large ribosomal subunit protein uL18 × 1 （P22451） 60S ribosomal protein L6 × 1 （Q8UWG7） Large ribosomal subunit protein uL30 × 1 （Q5ZJ56） Large ribosomal subunit protein eL8 × 1 （P32429） 60S ribosomal protein L9 × 1 （A0A1D5NVI1） Large ribosomal subunit protein uL16 × 1 （Q08200） 60S ribosomal protein L11 × 1 （A0A1D5P3B1） Large ribosomal subunit protein eL13 × 1 （P41125） Ribosomal protein L15 × 1 （F1NQG5） Ribosomal protein uL13 × 1 60S ribosomal protein L17 × 1 （A0A1D5PR40） Ribosomal protein L18 × 1 Ribosomal protein L19 × 1 （Q5ZKK8） 60S ribosomal protein L18a × 1 60S ribosomal protein L21 × 1 （R4GIQ2） Large ribosomal subunit protein eL22 × 1 （Q98TF8） Large ribosomal subunit protein uL14 × 1 Ribosomal protein L24 × 1 （A0A8V0XRE7） Ribosomal protein uL23 × 1 Ribosomal protein L26 like 1 × 1 （F2Z4K6） Large ribosomal subunit protein eL27 × 1 （P61355） Ribosomal protein uL15 × 1 60S ribosomal protein L29 × 1 （A0A1L1RNZ2） Large ribosomal subunit protein eL30 × 1 （P67883） 60S ribosomal protein L31 × 1 （A0A1L1RT94） Ribosomal protein L32 × 1 （E1BVB1） 60S ribosomal protein L35a × 1 （A0A8V0YS49） 60S ribosomal protein L34 × 1 （A0A1L1S0X5） Large ribosomal subunit protein uL29 × 1 （Q98TF7） Large ribosomal subunit protein eL36 × 1 （Q98TF6） Ribosomal protein L37 × 1 （E1C810） 60S ribosomal protein L38 × 1 （E1BU66） Large ribosomal subunit protein eL39 × 1 （Q98TF5） Ubiquitin-60S ribosomal protein L40 × 1 （O42388） Ribosomal protein L36a like × 1 （A0A8V0YUB1） Large ribosomal subunit protein eL43 × 1 （P32046） 60S ribosomal protein L28 × 1 （Q5F346） 18S rRNA × 1 Small ribosomal subunit protein eS1 × 1 40S ribosomal protein S27 × 1 （A0A3Q2TV39） 40S ribosomal protein S28 × 1 （A0A3Q2U825） 40S ribosomal protein S2 × 1 （A0A8V0Z891） Small ribosomal subunit protein eS4 × 1 （P47836） Ribosomal protein eS30 × 1 40S ribosomal protein S26 × 1 （Q5ZM66） Small ribosomal subunit protein eS6 × 1 （P47838） 40S ribosomal protein S7 × 1 （F1NN16） 40S ribosomal protein S8 × 1 （F1NB02） 40S ribosomal protein S9 × 1 （B7NZS8） 40S ribosomal protein S11 × 1 （Q98TH5） Small ribosomal subunit protein uS15 × 1 （Q6ITC7） Ribosomal protein S14 × 1 （Q5ZHW8） 40S ribosomal protein S20 × 1 （F1NH93） Small ribosomal subunit protein eS21 × 1 40S ribosomal protein S15a × 1 （A0A3Q3A7P6） Small ribosomal subunit protein uS12 × 1 40S ribosomal protein S24 × 1 （F1NF89） Small ribosomal subunit protein uS2 × 1 （P50890） Ribosomal protein S16 × 1 （R4GGJ0） Ubiquitin × 1 （P79781） Ribosomal protein S5 × 1 （G1TFM5） Small ribosomal subunit protein RACK1 × 1 （P63247） 40S ribosomal protein S29 × 1 （A0A8V0Z8V3） Ribosomal protein S10 × 1 （E1C4N0） Small ribosomal subunit protein eS12 × 1 （P84175） Small ribosomal subunit protein uS19 × 1 （P62846） 40S ribosomal protein S18 × 1 （G1TPG3） 40S ribosomal protein S19 × 1 40S ribosomal protein S25 × 1 （A0A8V1A7V4） DNA-(apurinic or apyrimidinic site) lyase × 1 （F1NPA9） Phe tRNA × 1 Small ribosomal subunit protein eS17 × 1 （P08636） MG MAGNESIUM ION × 494 ZN ZINC ION × 7 ELECTRON MICROSCOPY cryo-EM buffer：pH 7.5 cryo-EM vitrification conditions：Cryogen ETHANE Resolution 2.50 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

Other PDB Difference from Current Entry 8Q7Z Assembly / Oligomeric State Construct Mutations and Modifications Ligands, Ions and Non-polymers Method and Experimental Conditions Structure Quality
8Q87 Structure of the G. gallus 80S rotated ribosome in complex with eEF2 and SERBP1 Deposited 2023-08-18 Different oligomeric state Different ligand/ion Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 80 PDB declaration: 85-meric
Chain BM 1–131（131 aa）
Not recorded MG MAGNESIUM ION × 492 ZN ZINC ION × 8 GDP GUANOSINE-5'-DIPHOSPHATE × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 2.40 Å

1 other PDB entries and 1 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name Q98TF9_CHICK
Isoform —
PDB entities 16
Chains and sequence ranges Author chain BM； PDBConstruct 1–131； UniProt 1–131

Ribosomal protein L15

OrganismNot specified

UniProt F1NQG5

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein–RNA Heteromer Protein × 75 RNA 5 PDB declaration: 80-meric（80） Consistent with all polymer counts Chain BN； UniProt 1–204 Not recorded 28S rRNA × 1 5.8S rRNA × 1 5S rRNA × 1 60S ribosomal protein L41 × 1 （A0A087WNH4） 60S ribosomal protein L8 × 1 （F1NIX0） Ribosomal protein uL3 × 1 （Q5ZJZ2） 60S ribosomal protein L4 C-terminal domain-containing protein × 1 （Q5ZII1） Large ribosomal subunit protein uL18 × 1 （P22451） 60S ribosomal protein L6 × 1 （Q8UWG7） Large ribosomal subunit protein uL30 × 1 （Q5ZJ56） Large ribosomal subunit protein eL8 × 1 （P32429） 60S ribosomal protein L9 × 1 （A0A1D5NVI1） Large ribosomal subunit protein uL16 × 1 （Q08200） 60S ribosomal protein L11 × 1 （A0A1D5P3B1） Large ribosomal subunit protein eL13 × 1 （P41125） 60S ribosomal protein L14 × 1 （Q98TF9） Ribosomal protein uL13 × 1 60S ribosomal protein L17 × 1 （A0A1D5PR40） Ribosomal protein L18 × 1 Ribosomal protein L19 × 1 （Q5ZKK8） 60S ribosomal protein L18a × 1 60S ribosomal protein L21 × 1 （R4GIQ2） Large ribosomal subunit protein eL22 × 1 （Q98TF8） Large ribosomal subunit protein uL14 × 1 Ribosomal protein L24 × 1 （A0A8V0XRE7） Ribosomal protein uL23 × 1 Ribosomal protein L26 like 1 × 1 （F2Z4K6） Large ribosomal subunit protein eL27 × 1 （P61355） Ribosomal protein uL15 × 1 60S ribosomal protein L29 × 1 （A0A1L1RNZ2） Large ribosomal subunit protein eL30 × 1 （P67883） 60S ribosomal protein L31 × 1 （A0A1L1RT94） Ribosomal protein L32 × 1 （E1BVB1） 60S ribosomal protein L35a × 1 （A0A8V0YS49） 60S ribosomal protein L34 × 1 （A0A1L1S0X5） Large ribosomal subunit protein uL29 × 1 （Q98TF7） Large ribosomal subunit protein eL36 × 1 （Q98TF6） Ribosomal protein L37 × 1 （E1C810） 60S ribosomal protein L38 × 1 （E1BU66） Large ribosomal subunit protein eL39 × 1 （Q98TF5） Ubiquitin-60S ribosomal protein L40 × 1 （O42388） Ribosomal protein L36a like × 1 （A0A8V0YUB1） Large ribosomal subunit protein eL43 × 1 （P32046） 60S ribosomal protein L28 × 1 （Q5F346） 18S rRNA × 1 Small ribosomal subunit protein eS1 × 1 40S ribosomal protein S27 × 1 （A0A3Q2TV39） 40S ribosomal protein S28 × 1 （A0A3Q2U825） 40S ribosomal protein S2 × 1 （A0A8V0Z891） Small ribosomal subunit protein eS4 × 1 （P47836） Ribosomal protein eS30 × 1 40S ribosomal protein S26 × 1 （Q5ZM66） Small ribosomal subunit protein eS6 × 1 （P47838） 40S ribosomal protein S7 × 1 （F1NN16） 40S ribosomal protein S8 × 1 （F1NB02） 40S ribosomal protein S9 × 1 （B7NZS8） 40S ribosomal protein S11 × 1 （Q98TH5） Small ribosomal subunit protein uS15 × 1 （Q6ITC7） Ribosomal protein S14 × 1 （Q5ZHW8） 40S ribosomal protein S20 × 1 （F1NH93） Small ribosomal subunit protein eS21 × 1 40S ribosomal protein S15a × 1 （A0A3Q3A7P6） Small ribosomal subunit protein uS12 × 1 40S ribosomal protein S24 × 1 （F1NF89） Small ribosomal subunit protein uS2 × 1 （P50890） Ribosomal protein S16 × 1 （R4GGJ0） Ubiquitin × 1 （P79781） Ribosomal protein S5 × 1 （G1TFM5） Small ribosomal subunit protein RACK1 × 1 （P63247） 40S ribosomal protein S29 × 1 （A0A8V0Z8V3） Ribosomal protein S10 × 1 （E1C4N0） Small ribosomal subunit protein eS12 × 1 （P84175） Small ribosomal subunit protein uS19 × 1 （P62846） 40S ribosomal protein S18 × 1 （G1TPG3） 40S ribosomal protein S19 × 1 40S ribosomal protein S25 × 1 （A0A8V1A7V4） DNA-(apurinic or apyrimidinic site) lyase × 1 （F1NPA9） Phe tRNA × 1 Small ribosomal subunit protein eS17 × 1 （P08636） MG MAGNESIUM ION × 494 ZN ZINC ION × 7 ELECTRON MICROSCOPY cryo-EM buffer：pH 7.5 cryo-EM vitrification conditions：Cryogen ETHANE Resolution 2.50 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

Other PDB Difference from Current Entry 8Q7Z Assembly / Oligomeric State Construct Mutations and Modifications Ligands, Ions and Non-polymers Method and Experimental Conditions Structure Quality
8Q87 Structure of the G. gallus 80S rotated ribosome in complex with eEF2 and SERBP1 Deposited 2023-08-18 Different oligomeric state Different ligand/ion Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 80 PDB declaration: 85-meric
Chain BN 1–204（204 aa）
Not recorded MG MAGNESIUM ION × 492 ZN ZINC ION × 8 GDP GUANOSINE-5'-DIPHOSPHATE × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 2.40 Å

1 other PDB entries and 1 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name F1NQG5_CHICK
Isoform —
PDB entities 17
Chains and sequence ranges Author chain BN； PDBConstruct 1–204； UniProt 1–204

60S ribosomal protein L17

OrganismNot specified

UniProt A0A1D5PR40

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein–RNA Heteromer Protein × 75 RNA 5 PDB declaration: 80-meric（80） Consistent with all polymer counts Chain BP； UniProt 1–184 Not recorded 28S rRNA × 1 5.8S rRNA × 1 5S rRNA × 1 60S ribosomal protein L41 × 1 （A0A087WNH4） 60S ribosomal protein L8 × 1 （F1NIX0） Ribosomal protein uL3 × 1 （Q5ZJZ2） 60S ribosomal protein L4 C-terminal domain-containing protein × 1 （Q5ZII1） Large ribosomal subunit protein uL18 × 1 （P22451） 60S ribosomal protein L6 × 1 （Q8UWG7） Large ribosomal subunit protein uL30 × 1 （Q5ZJ56） Large ribosomal subunit protein eL8 × 1 （P32429） 60S ribosomal protein L9 × 1 （A0A1D5NVI1） Large ribosomal subunit protein uL16 × 1 （Q08200） 60S ribosomal protein L11 × 1 （A0A1D5P3B1） Large ribosomal subunit protein eL13 × 1 （P41125） 60S ribosomal protein L14 × 1 （Q98TF9） Ribosomal protein L15 × 1 （F1NQG5） Ribosomal protein uL13 × 1 Ribosomal protein L18 × 1 Ribosomal protein L19 × 1 （Q5ZKK8） 60S ribosomal protein L18a × 1 60S ribosomal protein L21 × 1 （R4GIQ2） Large ribosomal subunit protein eL22 × 1 （Q98TF8） Large ribosomal subunit protein uL14 × 1 Ribosomal protein L24 × 1 （A0A8V0XRE7） Ribosomal protein uL23 × 1 Ribosomal protein L26 like 1 × 1 （F2Z4K6） Large ribosomal subunit protein eL27 × 1 （P61355） Ribosomal protein uL15 × 1 60S ribosomal protein L29 × 1 （A0A1L1RNZ2） Large ribosomal subunit protein eL30 × 1 （P67883） 60S ribosomal protein L31 × 1 （A0A1L1RT94） Ribosomal protein L32 × 1 （E1BVB1） 60S ribosomal protein L35a × 1 （A0A8V0YS49） 60S ribosomal protein L34 × 1 （A0A1L1S0X5） Large ribosomal subunit protein uL29 × 1 （Q98TF7） Large ribosomal subunit protein eL36 × 1 （Q98TF6） Ribosomal protein L37 × 1 （E1C810） 60S ribosomal protein L38 × 1 （E1BU66） Large ribosomal subunit protein eL39 × 1 （Q98TF5） Ubiquitin-60S ribosomal protein L40 × 1 （O42388） Ribosomal protein L36a like × 1 （A0A8V0YUB1） Large ribosomal subunit protein eL43 × 1 （P32046） 60S ribosomal protein L28 × 1 （Q5F346） 18S rRNA × 1 Small ribosomal subunit protein eS1 × 1 40S ribosomal protein S27 × 1 （A0A3Q2TV39） 40S ribosomal protein S28 × 1 （A0A3Q2U825） 40S ribosomal protein S2 × 1 （A0A8V0Z891） Small ribosomal subunit protein eS4 × 1 （P47836） Ribosomal protein eS30 × 1 40S ribosomal protein S26 × 1 （Q5ZM66） Small ribosomal subunit protein eS6 × 1 （P47838） 40S ribosomal protein S7 × 1 （F1NN16） 40S ribosomal protein S8 × 1 （F1NB02） 40S ribosomal protein S9 × 1 （B7NZS8） 40S ribosomal protein S11 × 1 （Q98TH5） Small ribosomal subunit protein uS15 × 1 （Q6ITC7） Ribosomal protein S14 × 1 （Q5ZHW8） 40S ribosomal protein S20 × 1 （F1NH93） Small ribosomal subunit protein eS21 × 1 40S ribosomal protein S15a × 1 （A0A3Q3A7P6） Small ribosomal subunit protein uS12 × 1 40S ribosomal protein S24 × 1 （F1NF89） Small ribosomal subunit protein uS2 × 1 （P50890） Ribosomal protein S16 × 1 （R4GGJ0） Ubiquitin × 1 （P79781） Ribosomal protein S5 × 1 （G1TFM5） Small ribosomal subunit protein RACK1 × 1 （P63247） 40S ribosomal protein S29 × 1 （A0A8V0Z8V3） Ribosomal protein S10 × 1 （E1C4N0） Small ribosomal subunit protein eS12 × 1 （P84175） Small ribosomal subunit protein uS19 × 1 （P62846） 40S ribosomal protein S18 × 1 （G1TPG3） 40S ribosomal protein S19 × 1 40S ribosomal protein S25 × 1 （A0A8V1A7V4） DNA-(apurinic or apyrimidinic site) lyase × 1 （F1NPA9） Phe tRNA × 1 Small ribosomal subunit protein eS17 × 1 （P08636） MG MAGNESIUM ION × 494 ZN ZINC ION × 7 ELECTRON MICROSCOPY cryo-EM buffer：pH 7.5 cryo-EM vitrification conditions：Cryogen ETHANE Resolution 2.50 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

Other PDB Difference from Current Entry 8Q7Z Assembly / Oligomeric State Construct Mutations and Modifications Ligands, Ions and Non-polymers Method and Experimental Conditions Structure Quality
8Q87 Structure of the G. gallus 80S rotated ribosome in complex with eEF2 and SERBP1 Deposited 2023-08-18 Different oligomeric state Different ligand/ion Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 80 PDB declaration: 85-meric
Chain BP 1–184（184 aa）
Not recorded MG MAGNESIUM ION × 492 ZN ZINC ION × 8 GDP GUANOSINE-5'-DIPHOSPHATE × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 2.40 Å

1 other PDB entries and 1 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name A0A1D5PR40_CHICK
Isoform —
PDB entities 19
Chains and sequence ranges Author chain BP； PDBConstruct 1–184； UniProt 1–184

Ribosomal protein L19

OrganismNot specified

UniProt Q5ZKK8

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein–RNA Heteromer Protein × 75 RNA 5 PDB declaration: 80-meric（80） Consistent with all polymer counts Chain BR； UniProt 1–196 Not recorded 28S rRNA × 1 5.8S rRNA × 1 5S rRNA × 1 60S ribosomal protein L41 × 1 （A0A087WNH4） 60S ribosomal protein L8 × 1 （F1NIX0） Ribosomal protein uL3 × 1 （Q5ZJZ2） 60S ribosomal protein L4 C-terminal domain-containing protein × 1 （Q5ZII1） Large ribosomal subunit protein uL18 × 1 （P22451） 60S ribosomal protein L6 × 1 （Q8UWG7） Large ribosomal subunit protein uL30 × 1 （Q5ZJ56） Large ribosomal subunit protein eL8 × 1 （P32429） 60S ribosomal protein L9 × 1 （A0A1D5NVI1） Large ribosomal subunit protein uL16 × 1 （Q08200） 60S ribosomal protein L11 × 1 （A0A1D5P3B1） Large ribosomal subunit protein eL13 × 1 （P41125） 60S ribosomal protein L14 × 1 （Q98TF9） Ribosomal protein L15 × 1 （F1NQG5） Ribosomal protein uL13 × 1 60S ribosomal protein L17 × 1 （A0A1D5PR40） Ribosomal protein L18 × 1 60S ribosomal protein L18a × 1 60S ribosomal protein L21 × 1 （R4GIQ2） Large ribosomal subunit protein eL22 × 1 （Q98TF8） Large ribosomal subunit protein uL14 × 1 Ribosomal protein L24 × 1 （A0A8V0XRE7） Ribosomal protein uL23 × 1 Ribosomal protein L26 like 1 × 1 （F2Z4K6） Large ribosomal subunit protein eL27 × 1 （P61355） Ribosomal protein uL15 × 1 60S ribosomal protein L29 × 1 （A0A1L1RNZ2） Large ribosomal subunit protein eL30 × 1 （P67883） 60S ribosomal protein L31 × 1 （A0A1L1RT94） Ribosomal protein L32 × 1 （E1BVB1） 60S ribosomal protein L35a × 1 （A0A8V0YS49） 60S ribosomal protein L34 × 1 （A0A1L1S0X5） Large ribosomal subunit protein uL29 × 1 （Q98TF7） Large ribosomal subunit protein eL36 × 1 （Q98TF6） Ribosomal protein L37 × 1 （E1C810） 60S ribosomal protein L38 × 1 （E1BU66） Large ribosomal subunit protein eL39 × 1 （Q98TF5） Ubiquitin-60S ribosomal protein L40 × 1 （O42388） Ribosomal protein L36a like × 1 （A0A8V0YUB1） Large ribosomal subunit protein eL43 × 1 （P32046） 60S ribosomal protein L28 × 1 （Q5F346） 18S rRNA × 1 Small ribosomal subunit protein eS1 × 1 40S ribosomal protein S27 × 1 （A0A3Q2TV39） 40S ribosomal protein S28 × 1 （A0A3Q2U825） 40S ribosomal protein S2 × 1 （A0A8V0Z891） Small ribosomal subunit protein eS4 × 1 （P47836） Ribosomal protein eS30 × 1 40S ribosomal protein S26 × 1 （Q5ZM66） Small ribosomal subunit protein eS6 × 1 （P47838） 40S ribosomal protein S7 × 1 （F1NN16） 40S ribosomal protein S8 × 1 （F1NB02） 40S ribosomal protein S9 × 1 （B7NZS8） 40S ribosomal protein S11 × 1 （Q98TH5） Small ribosomal subunit protein uS15 × 1 （Q6ITC7） Ribosomal protein S14 × 1 （Q5ZHW8） 40S ribosomal protein S20 × 1 （F1NH93） Small ribosomal subunit protein eS21 × 1 40S ribosomal protein S15a × 1 （A0A3Q3A7P6） Small ribosomal subunit protein uS12 × 1 40S ribosomal protein S24 × 1 （F1NF89） Small ribosomal subunit protein uS2 × 1 （P50890） Ribosomal protein S16 × 1 （R4GGJ0） Ubiquitin × 1 （P79781） Ribosomal protein S5 × 1 （G1TFM5） Small ribosomal subunit protein RACK1 × 1 （P63247） 40S ribosomal protein S29 × 1 （A0A8V0Z8V3） Ribosomal protein S10 × 1 （E1C4N0） Small ribosomal subunit protein eS12 × 1 （P84175） Small ribosomal subunit protein uS19 × 1 （P62846） 40S ribosomal protein S18 × 1 （G1TPG3） 40S ribosomal protein S19 × 1 40S ribosomal protein S25 × 1 （A0A8V1A7V4） DNA-(apurinic or apyrimidinic site) lyase × 1 （F1NPA9） Phe tRNA × 1 Small ribosomal subunit protein eS17 × 1 （P08636） MG MAGNESIUM ION × 494 ZN ZINC ION × 7 ELECTRON MICROSCOPY cryo-EM buffer：pH 7.5 cryo-EM vitrification conditions：Cryogen ETHANE Resolution 2.50 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

Other PDB Difference from Current Entry 8Q7Z Assembly / Oligomeric State Construct Mutations and Modifications Ligands, Ions and Non-polymers Method and Experimental Conditions Structure Quality
8Q87 Structure of the G. gallus 80S rotated ribosome in complex with eEF2 and SERBP1 Deposited 2023-08-18 Different oligomeric state Different ligand/ion Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 80 PDB declaration: 85-meric
Chain BR 1–196（196 aa）
Not recorded MG MAGNESIUM ION × 492 ZN ZINC ION × 8 GDP GUANOSINE-5'-DIPHOSPHATE × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 2.40 Å

1 other PDB entries and 1 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name Q5ZKK8_CHICK
Isoform —
PDB entities 21
Chains and sequence ranges Author chain BR； PDBConstruct 1–196； UniProt 1–196

60S ribosomal protein L21

OrganismNot specified

UniProt R4GIQ2

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein–RNA Heteromer Protein × 75 RNA 5 PDB declaration: 80-meric（80） Consistent with all polymer counts Chain BT； UniProt 1–160 Not recorded 28S rRNA × 1 5.8S rRNA × 1 5S rRNA × 1 60S ribosomal protein L41 × 1 （A0A087WNH4） 60S ribosomal protein L8 × 1 （F1NIX0） Ribosomal protein uL3 × 1 （Q5ZJZ2） 60S ribosomal protein L4 C-terminal domain-containing protein × 1 （Q5ZII1） Large ribosomal subunit protein uL18 × 1 （P22451） 60S ribosomal protein L6 × 1 （Q8UWG7） Large ribosomal subunit protein uL30 × 1 （Q5ZJ56） Large ribosomal subunit protein eL8 × 1 （P32429） 60S ribosomal protein L9 × 1 （A0A1D5NVI1） Large ribosomal subunit protein uL16 × 1 （Q08200） 60S ribosomal protein L11 × 1 （A0A1D5P3B1） Large ribosomal subunit protein eL13 × 1 （P41125） 60S ribosomal protein L14 × 1 （Q98TF9） Ribosomal protein L15 × 1 （F1NQG5） Ribosomal protein uL13 × 1 60S ribosomal protein L17 × 1 （A0A1D5PR40） Ribosomal protein L18 × 1 Ribosomal protein L19 × 1 （Q5ZKK8） 60S ribosomal protein L18a × 1 Large ribosomal subunit protein eL22 × 1 （Q98TF8） Large ribosomal subunit protein uL14 × 1 Ribosomal protein L24 × 1 （A0A8V0XRE7） Ribosomal protein uL23 × 1 Ribosomal protein L26 like 1 × 1 （F2Z4K6） Large ribosomal subunit protein eL27 × 1 （P61355） Ribosomal protein uL15 × 1 60S ribosomal protein L29 × 1 （A0A1L1RNZ2） Large ribosomal subunit protein eL30 × 1 （P67883） 60S ribosomal protein L31 × 1 （A0A1L1RT94） Ribosomal protein L32 × 1 （E1BVB1） 60S ribosomal protein L35a × 1 （A0A8V0YS49） 60S ribosomal protein L34 × 1 （A0A1L1S0X5） Large ribosomal subunit protein uL29 × 1 （Q98TF7） Large ribosomal subunit protein eL36 × 1 （Q98TF6） Ribosomal protein L37 × 1 （E1C810） 60S ribosomal protein L38 × 1 （E1BU66） Large ribosomal subunit protein eL39 × 1 （Q98TF5） Ubiquitin-60S ribosomal protein L40 × 1 （O42388） Ribosomal protein L36a like × 1 （A0A8V0YUB1） Large ribosomal subunit protein eL43 × 1 （P32046） 60S ribosomal protein L28 × 1 （Q5F346） 18S rRNA × 1 Small ribosomal subunit protein eS1 × 1 40S ribosomal protein S27 × 1 （A0A3Q2TV39） 40S ribosomal protein S28 × 1 （A0A3Q2U825） 40S ribosomal protein S2 × 1 （A0A8V0Z891） Small ribosomal subunit protein eS4 × 1 （P47836） Ribosomal protein eS30 × 1 40S ribosomal protein S26 × 1 （Q5ZM66） Small ribosomal subunit protein eS6 × 1 （P47838） 40S ribosomal protein S7 × 1 （F1NN16） 40S ribosomal protein S8 × 1 （F1NB02） 40S ribosomal protein S9 × 1 （B7NZS8） 40S ribosomal protein S11 × 1 （Q98TH5） Small ribosomal subunit protein uS15 × 1 （Q6ITC7） Ribosomal protein S14 × 1 （Q5ZHW8） 40S ribosomal protein S20 × 1 （F1NH93） Small ribosomal subunit protein eS21 × 1 40S ribosomal protein S15a × 1 （A0A3Q3A7P6） Small ribosomal subunit protein uS12 × 1 40S ribosomal protein S24 × 1 （F1NF89） Small ribosomal subunit protein uS2 × 1 （P50890） Ribosomal protein S16 × 1 （R4GGJ0） Ubiquitin × 1 （P79781） Ribosomal protein S5 × 1 （G1TFM5） Small ribosomal subunit protein RACK1 × 1 （P63247） 40S ribosomal protein S29 × 1 （A0A8V0Z8V3） Ribosomal protein S10 × 1 （E1C4N0） Small ribosomal subunit protein eS12 × 1 （P84175） Small ribosomal subunit protein uS19 × 1 （P62846） 40S ribosomal protein S18 × 1 （G1TPG3） 40S ribosomal protein S19 × 1 40S ribosomal protein S25 × 1 （A0A8V1A7V4） DNA-(apurinic or apyrimidinic site) lyase × 1 （F1NPA9） Phe tRNA × 1 Small ribosomal subunit protein eS17 × 1 （P08636） MG MAGNESIUM ION × 494 ZN ZINC ION × 7 ELECTRON MICROSCOPY cryo-EM buffer：pH 7.5 cryo-EM vitrification conditions：Cryogen ETHANE Resolution 2.50 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

Other PDB Difference from Current Entry 8Q7Z Assembly / Oligomeric State Construct Mutations and Modifications Ligands, Ions and Non-polymers Method and Experimental Conditions Structure Quality
8Q87 Structure of the G. gallus 80S rotated ribosome in complex with eEF2 and SERBP1 Deposited 2023-08-18 Different oligomeric state Different ligand/ion Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 80 PDB declaration: 85-meric
Chain BT 1–160（160 aa）
Not recorded MG MAGNESIUM ION × 492 ZN ZINC ION × 8 GDP GUANOSINE-5'-DIPHOSPHATE × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 2.40 Å

1 other PDB entries and 1 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name R4GIQ2_CHICK
Isoform —
PDB entities 23
Chains and sequence ranges Author chain BT； PDBConstruct 1–160； UniProt 1–160

Large ribosomal subunit protein eL22

OrganismNot specified

UniProt Q98TF8

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein–RNA Heteromer Protein × 75 RNA 5 PDB declaration: 80-meric（80） Consistent with all polymer counts Chain BU； UniProt 1–128 Not recorded 28S rRNA × 1 5.8S rRNA × 1 5S rRNA × 1 60S ribosomal protein L41 × 1 （A0A087WNH4） 60S ribosomal protein L8 × 1 （F1NIX0） Ribosomal protein uL3 × 1 （Q5ZJZ2） 60S ribosomal protein L4 C-terminal domain-containing protein × 1 （Q5ZII1） Large ribosomal subunit protein uL18 × 1 （P22451） 60S ribosomal protein L6 × 1 （Q8UWG7） Large ribosomal subunit protein uL30 × 1 （Q5ZJ56） Large ribosomal subunit protein eL8 × 1 （P32429） 60S ribosomal protein L9 × 1 （A0A1D5NVI1） Large ribosomal subunit protein uL16 × 1 （Q08200） 60S ribosomal protein L11 × 1 （A0A1D5P3B1） Large ribosomal subunit protein eL13 × 1 （P41125） 60S ribosomal protein L14 × 1 （Q98TF9） Ribosomal protein L15 × 1 （F1NQG5） Ribosomal protein uL13 × 1 60S ribosomal protein L17 × 1 （A0A1D5PR40） Ribosomal protein L18 × 1 Ribosomal protein L19 × 1 （Q5ZKK8） 60S ribosomal protein L18a × 1 60S ribosomal protein L21 × 1 （R4GIQ2） Large ribosomal subunit protein uL14 × 1 Ribosomal protein L24 × 1 （A0A8V0XRE7） Ribosomal protein uL23 × 1 Ribosomal protein L26 like 1 × 1 （F2Z4K6） Large ribosomal subunit protein eL27 × 1 （P61355） Ribosomal protein uL15 × 1 60S ribosomal protein L29 × 1 （A0A1L1RNZ2） Large ribosomal subunit protein eL30 × 1 （P67883） 60S ribosomal protein L31 × 1 （A0A1L1RT94） Ribosomal protein L32 × 1 （E1BVB1） 60S ribosomal protein L35a × 1 （A0A8V0YS49） 60S ribosomal protein L34 × 1 （A0A1L1S0X5） Large ribosomal subunit protein uL29 × 1 （Q98TF7） Large ribosomal subunit protein eL36 × 1 （Q98TF6） Ribosomal protein L37 × 1 （E1C810） 60S ribosomal protein L38 × 1 （E1BU66） Large ribosomal subunit protein eL39 × 1 （Q98TF5） Ubiquitin-60S ribosomal protein L40 × 1 （O42388） Ribosomal protein L36a like × 1 （A0A8V0YUB1） Large ribosomal subunit protein eL43 × 1 （P32046） 60S ribosomal protein L28 × 1 （Q5F346） 18S rRNA × 1 Small ribosomal subunit protein eS1 × 1 40S ribosomal protein S27 × 1 （A0A3Q2TV39） 40S ribosomal protein S28 × 1 （A0A3Q2U825） 40S ribosomal protein S2 × 1 （A0A8V0Z891） Small ribosomal subunit protein eS4 × 1 （P47836） Ribosomal protein eS30 × 1 40S ribosomal protein S26 × 1 （Q5ZM66） Small ribosomal subunit protein eS6 × 1 （P47838） 40S ribosomal protein S7 × 1 （F1NN16） 40S ribosomal protein S8 × 1 （F1NB02） 40S ribosomal protein S9 × 1 （B7NZS8） 40S ribosomal protein S11 × 1 （Q98TH5） Small ribosomal subunit protein uS15 × 1 （Q6ITC7） Ribosomal protein S14 × 1 （Q5ZHW8） 40S ribosomal protein S20 × 1 （F1NH93） Small ribosomal subunit protein eS21 × 1 40S ribosomal protein S15a × 1 （A0A3Q3A7P6） Small ribosomal subunit protein uS12 × 1 40S ribosomal protein S24 × 1 （F1NF89） Small ribosomal subunit protein uS2 × 1 （P50890） Ribosomal protein S16 × 1 （R4GGJ0） Ubiquitin × 1 （P79781） Ribosomal protein S5 × 1 （G1TFM5） Small ribosomal subunit protein RACK1 × 1 （P63247） 40S ribosomal protein S29 × 1 （A0A8V0Z8V3） Ribosomal protein S10 × 1 （E1C4N0） Small ribosomal subunit protein eS12 × 1 （P84175） Small ribosomal subunit protein uS19 × 1 （P62846） 40S ribosomal protein S18 × 1 （G1TPG3） 40S ribosomal protein S19 × 1 40S ribosomal protein S25 × 1 （A0A8V1A7V4） DNA-(apurinic or apyrimidinic site) lyase × 1 （F1NPA9） Phe tRNA × 1 Small ribosomal subunit protein eS17 × 1 （P08636） MG MAGNESIUM ION × 494 ZN ZINC ION × 7 ELECTRON MICROSCOPY cryo-EM buffer：pH 7.5 cryo-EM vitrification conditions：Cryogen ETHANE Resolution 2.50 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

Other PDB Difference from Current Entry 8Q7Z Assembly / Oligomeric State Construct Mutations and Modifications Ligands, Ions and Non-polymers Method and Experimental Conditions Structure Quality
8Q87 Structure of the G. gallus 80S rotated ribosome in complex with eEF2 and SERBP1 Deposited 2023-08-18 Different oligomeric state Different ligand/ion Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 80 PDB declaration: 85-meric
Chain BU 1–128（128 aa）
Not recorded MG MAGNESIUM ION × 492 ZN ZINC ION × 8 GDP GUANOSINE-5'-DIPHOSPHATE × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 2.40 Å

1 other PDB entries and 1 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name RL22_CHICK
Isoform —
PDB entities 24
Chains and sequence ranges Author chain BU； PDBConstruct 1–128； UniProt 1–128

Ribosomal protein L24

OrganismNot specified

UniProt A0A8V0XRE7

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein–RNA Heteromer Protein × 75 RNA 5 PDB declaration: 80-meric（80） Consistent with all polymer counts Chain BW； UniProt 1–157 Not recorded 28S rRNA × 1 5.8S rRNA × 1 5S rRNA × 1 60S ribosomal protein L41 × 1 （A0A087WNH4） 60S ribosomal protein L8 × 1 （F1NIX0） Ribosomal protein uL3 × 1 （Q5ZJZ2） 60S ribosomal protein L4 C-terminal domain-containing protein × 1 （Q5ZII1） Large ribosomal subunit protein uL18 × 1 （P22451） 60S ribosomal protein L6 × 1 （Q8UWG7） Large ribosomal subunit protein uL30 × 1 （Q5ZJ56） Large ribosomal subunit protein eL8 × 1 （P32429） 60S ribosomal protein L9 × 1 （A0A1D5NVI1） Large ribosomal subunit protein uL16 × 1 （Q08200） 60S ribosomal protein L11 × 1 （A0A1D5P3B1） Large ribosomal subunit protein eL13 × 1 （P41125） 60S ribosomal protein L14 × 1 （Q98TF9） Ribosomal protein L15 × 1 （F1NQG5） Ribosomal protein uL13 × 1 60S ribosomal protein L17 × 1 （A0A1D5PR40） Ribosomal protein L18 × 1 Ribosomal protein L19 × 1 （Q5ZKK8） 60S ribosomal protein L18a × 1 60S ribosomal protein L21 × 1 （R4GIQ2） Large ribosomal subunit protein eL22 × 1 （Q98TF8） Large ribosomal subunit protein uL14 × 1 Ribosomal protein uL23 × 1 Ribosomal protein L26 like 1 × 1 （F2Z4K6） Large ribosomal subunit protein eL27 × 1 （P61355） Ribosomal protein uL15 × 1 60S ribosomal protein L29 × 1 （A0A1L1RNZ2） Large ribosomal subunit protein eL30 × 1 （P67883） 60S ribosomal protein L31 × 1 （A0A1L1RT94） Ribosomal protein L32 × 1 （E1BVB1） 60S ribosomal protein L35a × 1 （A0A8V0YS49） 60S ribosomal protein L34 × 1 （A0A1L1S0X5） Large ribosomal subunit protein uL29 × 1 （Q98TF7） Large ribosomal subunit protein eL36 × 1 （Q98TF6） Ribosomal protein L37 × 1 （E1C810） 60S ribosomal protein L38 × 1 （E1BU66） Large ribosomal subunit protein eL39 × 1 （Q98TF5） Ubiquitin-60S ribosomal protein L40 × 1 （O42388） Ribosomal protein L36a like × 1 （A0A8V0YUB1） Large ribosomal subunit protein eL43 × 1 （P32046） 60S ribosomal protein L28 × 1 （Q5F346） 18S rRNA × 1 Small ribosomal subunit protein eS1 × 1 40S ribosomal protein S27 × 1 （A0A3Q2TV39） 40S ribosomal protein S28 × 1 （A0A3Q2U825） 40S ribosomal protein S2 × 1 （A0A8V0Z891） Small ribosomal subunit protein eS4 × 1 （P47836） Ribosomal protein eS30 × 1 40S ribosomal protein S26 × 1 （Q5ZM66） Small ribosomal subunit protein eS6 × 1 （P47838） 40S ribosomal protein S7 × 1 （F1NN16） 40S ribosomal protein S8 × 1 （F1NB02） 40S ribosomal protein S9 × 1 （B7NZS8） 40S ribosomal protein S11 × 1 （Q98TH5） Small ribosomal subunit protein uS15 × 1 （Q6ITC7） Ribosomal protein S14 × 1 （Q5ZHW8） 40S ribosomal protein S20 × 1 （F1NH93） Small ribosomal subunit protein eS21 × 1 40S ribosomal protein S15a × 1 （A0A3Q3A7P6） Small ribosomal subunit protein uS12 × 1 40S ribosomal protein S24 × 1 （F1NF89） Small ribosomal subunit protein uS2 × 1 （P50890） Ribosomal protein S16 × 1 （R4GGJ0） Ubiquitin × 1 （P79781） Ribosomal protein S5 × 1 （G1TFM5） Small ribosomal subunit protein RACK1 × 1 （P63247） 40S ribosomal protein S29 × 1 （A0A8V0Z8V3） Ribosomal protein S10 × 1 （E1C4N0） Small ribosomal subunit protein eS12 × 1 （P84175） Small ribosomal subunit protein uS19 × 1 （P62846） 40S ribosomal protein S18 × 1 （G1TPG3） 40S ribosomal protein S19 × 1 40S ribosomal protein S25 × 1 （A0A8V1A7V4） DNA-(apurinic or apyrimidinic site) lyase × 1 （F1NPA9） Phe tRNA × 1 Small ribosomal subunit protein eS17 × 1 （P08636） MG MAGNESIUM ION × 494 ZN ZINC ION × 7 ELECTRON MICROSCOPY cryo-EM buffer：pH 7.5 cryo-EM vitrification conditions：Cryogen ETHANE Resolution 2.50 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

Other PDB Difference from Current Entry 8Q7Z Assembly / Oligomeric State Construct Mutations and Modifications Ligands, Ions and Non-polymers Method and Experimental Conditions Structure Quality
8Q87 Structure of the G. gallus 80S rotated ribosome in complex with eEF2 and SERBP1 Deposited 2023-08-18 Different oligomeric state Different ligand/ion Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 80 PDB declaration: 85-meric
Chain BW 1–157（157 aa）
Not recorded MG MAGNESIUM ION × 492 ZN ZINC ION × 8 GDP GUANOSINE-5'-DIPHOSPHATE × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 2.40 Å

1 other PDB entries and 1 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name A0A8V0XRE7_CHICK
Isoform —
PDB entities 26
Chains and sequence ranges Author chain BW； PDBConstruct 1–157； UniProt 1–157

Ribosomal protein L26 like 1

OrganismNot specified

UniProt F2Z4K6

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein–RNA Heteromer Protein × 75 RNA 5 PDB declaration: 80-meric（80） Consistent with all polymer counts Chain BY； UniProt 1–145 Not recorded 28S rRNA × 1 5.8S rRNA × 1 5S rRNA × 1 60S ribosomal protein L41 × 1 （A0A087WNH4） 60S ribosomal protein L8 × 1 （F1NIX0） Ribosomal protein uL3 × 1 （Q5ZJZ2） 60S ribosomal protein L4 C-terminal domain-containing protein × 1 （Q5ZII1） Large ribosomal subunit protein uL18 × 1 （P22451） 60S ribosomal protein L6 × 1 （Q8UWG7） Large ribosomal subunit protein uL30 × 1 （Q5ZJ56） Large ribosomal subunit protein eL8 × 1 （P32429） 60S ribosomal protein L9 × 1 （A0A1D5NVI1） Large ribosomal subunit protein uL16 × 1 （Q08200） 60S ribosomal protein L11 × 1 （A0A1D5P3B1） Large ribosomal subunit protein eL13 × 1 （P41125） 60S ribosomal protein L14 × 1 （Q98TF9） Ribosomal protein L15 × 1 （F1NQG5） Ribosomal protein uL13 × 1 60S ribosomal protein L17 × 1 （A0A1D5PR40） Ribosomal protein L18 × 1 Ribosomal protein L19 × 1 （Q5ZKK8） 60S ribosomal protein L18a × 1 60S ribosomal protein L21 × 1 （R4GIQ2） Large ribosomal subunit protein eL22 × 1 （Q98TF8） Large ribosomal subunit protein uL14 × 1 Ribosomal protein L24 × 1 （A0A8V0XRE7） Ribosomal protein uL23 × 1 Large ribosomal subunit protein eL27 × 1 （P61355） Ribosomal protein uL15 × 1 60S ribosomal protein L29 × 1 （A0A1L1RNZ2） Large ribosomal subunit protein eL30 × 1 （P67883） 60S ribosomal protein L31 × 1 （A0A1L1RT94） Ribosomal protein L32 × 1 （E1BVB1） 60S ribosomal protein L35a × 1 （A0A8V0YS49） 60S ribosomal protein L34 × 1 （A0A1L1S0X5） Large ribosomal subunit protein uL29 × 1 （Q98TF7） Large ribosomal subunit protein eL36 × 1 （Q98TF6） Ribosomal protein L37 × 1 （E1C810） 60S ribosomal protein L38 × 1 （E1BU66） Large ribosomal subunit protein eL39 × 1 （Q98TF5） Ubiquitin-60S ribosomal protein L40 × 1 （O42388） Ribosomal protein L36a like × 1 （A0A8V0YUB1） Large ribosomal subunit protein eL43 × 1 （P32046） 60S ribosomal protein L28 × 1 （Q5F346） 18S rRNA × 1 Small ribosomal subunit protein eS1 × 1 40S ribosomal protein S27 × 1 （A0A3Q2TV39） 40S ribosomal protein S28 × 1 （A0A3Q2U825） 40S ribosomal protein S2 × 1 （A0A8V0Z891） Small ribosomal subunit protein eS4 × 1 （P47836） Ribosomal protein eS30 × 1 40S ribosomal protein S26 × 1 （Q5ZM66） Small ribosomal subunit protein eS6 × 1 （P47838） 40S ribosomal protein S7 × 1 （F1NN16） 40S ribosomal protein S8 × 1 （F1NB02） 40S ribosomal protein S9 × 1 （B7NZS8） 40S ribosomal protein S11 × 1 （Q98TH5） Small ribosomal subunit protein uS15 × 1 （Q6ITC7） Ribosomal protein S14 × 1 （Q5ZHW8） 40S ribosomal protein S20 × 1 （F1NH93） Small ribosomal subunit protein eS21 × 1 40S ribosomal protein S15a × 1 （A0A3Q3A7P6） Small ribosomal subunit protein uS12 × 1 40S ribosomal protein S24 × 1 （F1NF89） Small ribosomal subunit protein uS2 × 1 （P50890） Ribosomal protein S16 × 1 （R4GGJ0） Ubiquitin × 1 （P79781） Ribosomal protein S5 × 1 （G1TFM5） Small ribosomal subunit protein RACK1 × 1 （P63247） 40S ribosomal protein S29 × 1 （A0A8V0Z8V3） Ribosomal protein S10 × 1 （E1C4N0） Small ribosomal subunit protein eS12 × 1 （P84175） Small ribosomal subunit protein uS19 × 1 （P62846） 40S ribosomal protein S18 × 1 （G1TPG3） 40S ribosomal protein S19 × 1 40S ribosomal protein S25 × 1 （A0A8V1A7V4） DNA-(apurinic or apyrimidinic site) lyase × 1 （F1NPA9） Phe tRNA × 1 Small ribosomal subunit protein eS17 × 1 （P08636） MG MAGNESIUM ION × 494 ZN ZINC ION × 7 ELECTRON MICROSCOPY cryo-EM buffer：pH 7.5 cryo-EM vitrification conditions：Cryogen ETHANE Resolution 2.50 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

Other PDB Difference from Current Entry 8Q7Z Assembly / Oligomeric State Construct Mutations and Modifications Ligands, Ions and Non-polymers Method and Experimental Conditions Structure Quality
8Q87 Structure of the G. gallus 80S rotated ribosome in complex with eEF2 and SERBP1 Deposited 2023-08-18 Different oligomeric state Different ligand/ion Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 80 PDB declaration: 85-meric
Chain BY 1–145（145 aa）
Not recorded MG MAGNESIUM ION × 492 ZN ZINC ION × 8 GDP GUANOSINE-5'-DIPHOSPHATE × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 2.40 Å

1 other PDB entries and 1 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name F2Z4K6_CHICK
Isoform —
PDB entities 28
Chains and sequence ranges Author chain BY； PDBConstruct 1–145； UniProt 1–145

Large ribosomal subunit protein eL27

OrganismNot specified

UniProt P61355

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein–RNA Heteromer Protein × 75 RNA 5 PDB declaration: 80-meric（80） Consistent with all polymer counts Chain BZ； UniProt 1–136 Not recorded 28S rRNA × 1 5.8S rRNA × 1 5S rRNA × 1 60S ribosomal protein L41 × 1 （A0A087WNH4） 60S ribosomal protein L8 × 1 （F1NIX0） Ribosomal protein uL3 × 1 （Q5ZJZ2） 60S ribosomal protein L4 C-terminal domain-containing protein × 1 （Q5ZII1） Large ribosomal subunit protein uL18 × 1 （P22451） 60S ribosomal protein L6 × 1 （Q8UWG7） Large ribosomal subunit protein uL30 × 1 （Q5ZJ56） Large ribosomal subunit protein eL8 × 1 （P32429） 60S ribosomal protein L9 × 1 （A0A1D5NVI1） Large ribosomal subunit protein uL16 × 1 （Q08200） 60S ribosomal protein L11 × 1 （A0A1D5P3B1） Large ribosomal subunit protein eL13 × 1 （P41125） 60S ribosomal protein L14 × 1 （Q98TF9） Ribosomal protein L15 × 1 （F1NQG5） Ribosomal protein uL13 × 1 60S ribosomal protein L17 × 1 （A0A1D5PR40） Ribosomal protein L18 × 1 Ribosomal protein L19 × 1 （Q5ZKK8） 60S ribosomal protein L18a × 1 60S ribosomal protein L21 × 1 （R4GIQ2） Large ribosomal subunit protein eL22 × 1 （Q98TF8） Large ribosomal subunit protein uL14 × 1 Ribosomal protein L24 × 1 （A0A8V0XRE7） Ribosomal protein uL23 × 1 Ribosomal protein L26 like 1 × 1 （F2Z4K6） Ribosomal protein uL15 × 1 60S ribosomal protein L29 × 1 （A0A1L1RNZ2） Large ribosomal subunit protein eL30 × 1 （P67883） 60S ribosomal protein L31 × 1 （A0A1L1RT94） Ribosomal protein L32 × 1 （E1BVB1） 60S ribosomal protein L35a × 1 （A0A8V0YS49） 60S ribosomal protein L34 × 1 （A0A1L1S0X5） Large ribosomal subunit protein uL29 × 1 （Q98TF7） Large ribosomal subunit protein eL36 × 1 （Q98TF6） Ribosomal protein L37 × 1 （E1C810） 60S ribosomal protein L38 × 1 （E1BU66） Large ribosomal subunit protein eL39 × 1 （Q98TF5） Ubiquitin-60S ribosomal protein L40 × 1 （O42388） Ribosomal protein L36a like × 1 （A0A8V0YUB1） Large ribosomal subunit protein eL43 × 1 （P32046） 60S ribosomal protein L28 × 1 （Q5F346） 18S rRNA × 1 Small ribosomal subunit protein eS1 × 1 40S ribosomal protein S27 × 1 （A0A3Q2TV39） 40S ribosomal protein S28 × 1 （A0A3Q2U825） 40S ribosomal protein S2 × 1 （A0A8V0Z891） Small ribosomal subunit protein eS4 × 1 （P47836） Ribosomal protein eS30 × 1 40S ribosomal protein S26 × 1 （Q5ZM66） Small ribosomal subunit protein eS6 × 1 （P47838） 40S ribosomal protein S7 × 1 （F1NN16） 40S ribosomal protein S8 × 1 （F1NB02） 40S ribosomal protein S9 × 1 （B7NZS8） 40S ribosomal protein S11 × 1 （Q98TH5） Small ribosomal subunit protein uS15 × 1 （Q6ITC7） Ribosomal protein S14 × 1 （Q5ZHW8） 40S ribosomal protein S20 × 1 （F1NH93） Small ribosomal subunit protein eS21 × 1 40S ribosomal protein S15a × 1 （A0A3Q3A7P6） Small ribosomal subunit protein uS12 × 1 40S ribosomal protein S24 × 1 （F1NF89） Small ribosomal subunit protein uS2 × 1 （P50890） Ribosomal protein S16 × 1 （R4GGJ0） Ubiquitin × 1 （P79781） Ribosomal protein S5 × 1 （G1TFM5） Small ribosomal subunit protein RACK1 × 1 （P63247） 40S ribosomal protein S29 × 1 （A0A8V0Z8V3） Ribosomal protein S10 × 1 （E1C4N0） Small ribosomal subunit protein eS12 × 1 （P84175） Small ribosomal subunit protein uS19 × 1 （P62846） 40S ribosomal protein S18 × 1 （G1TPG3） 40S ribosomal protein S19 × 1 40S ribosomal protein S25 × 1 （A0A8V1A7V4） DNA-(apurinic or apyrimidinic site) lyase × 1 （F1NPA9） Phe tRNA × 1 Small ribosomal subunit protein eS17 × 1 （P08636） MG MAGNESIUM ION × 494 ZN ZINC ION × 7 ELECTRON MICROSCOPY cryo-EM buffer：pH 7.5 cryo-EM vitrification conditions：Cryogen ETHANE Resolution 2.50 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

Other PDB Difference from Current Entry 8Q7Z Assembly / Oligomeric State Construct Mutations and Modifications Ligands, Ions and Non-polymers Method and Experimental Conditions Structure Quality
8Q87 Structure of the G. gallus 80S rotated ribosome in complex with eEF2 and SERBP1 Deposited 2023-08-18 Different oligomeric state Different ligand/ion Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 80 PDB declaration: 85-meric
Chain BZ 1–136（136 aa）
Not recorded MG MAGNESIUM ION × 492 ZN ZINC ION × 8 GDP GUANOSINE-5'-DIPHOSPHATE × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 2.40 Å

1 other PDB entries and 1 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name RL27_CHICK
Isoform —
PDB entities 29
Chains and sequence ranges Author chain BZ； PDBConstruct 1–136； UniProt 1–136

60S ribosomal protein L29

OrganismNot specified

UniProt A0A1L1RNZ2

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein–RNA Heteromer Protein × 75 RNA 5 PDB declaration: 80-meric（80） Consistent with all polymer counts Chain Bb； UniProt 1–71 Not recorded 28S rRNA × 1 5.8S rRNA × 1 5S rRNA × 1 60S ribosomal protein L41 × 1 （A0A087WNH4） 60S ribosomal protein L8 × 1 （F1NIX0） Ribosomal protein uL3 × 1 （Q5ZJZ2） 60S ribosomal protein L4 C-terminal domain-containing protein × 1 （Q5ZII1） Large ribosomal subunit protein uL18 × 1 （P22451） 60S ribosomal protein L6 × 1 （Q8UWG7） Large ribosomal subunit protein uL30 × 1 （Q5ZJ56） Large ribosomal subunit protein eL8 × 1 （P32429） 60S ribosomal protein L9 × 1 （A0A1D5NVI1） Large ribosomal subunit protein uL16 × 1 （Q08200） 60S ribosomal protein L11 × 1 （A0A1D5P3B1） Large ribosomal subunit protein eL13 × 1 （P41125） 60S ribosomal protein L14 × 1 （Q98TF9） Ribosomal protein L15 × 1 （F1NQG5） Ribosomal protein uL13 × 1 60S ribosomal protein L17 × 1 （A0A1D5PR40） Ribosomal protein L18 × 1 Ribosomal protein L19 × 1 （Q5ZKK8） 60S ribosomal protein L18a × 1 60S ribosomal protein L21 × 1 （R4GIQ2） Large ribosomal subunit protein eL22 × 1 （Q98TF8） Large ribosomal subunit protein uL14 × 1 Ribosomal protein L24 × 1 （A0A8V0XRE7） Ribosomal protein uL23 × 1 Ribosomal protein L26 like 1 × 1 （F2Z4K6） Large ribosomal subunit protein eL27 × 1 （P61355） Ribosomal protein uL15 × 1 Large ribosomal subunit protein eL30 × 1 （P67883） 60S ribosomal protein L31 × 1 （A0A1L1RT94） Ribosomal protein L32 × 1 （E1BVB1） 60S ribosomal protein L35a × 1 （A0A8V0YS49） 60S ribosomal protein L34 × 1 （A0A1L1S0X5） Large ribosomal subunit protein uL29 × 1 （Q98TF7） Large ribosomal subunit protein eL36 × 1 （Q98TF6） Ribosomal protein L37 × 1 （E1C810） 60S ribosomal protein L38 × 1 （E1BU66） Large ribosomal subunit protein eL39 × 1 （Q98TF5） Ubiquitin-60S ribosomal protein L40 × 1 （O42388） Ribosomal protein L36a like × 1 （A0A8V0YUB1） Large ribosomal subunit protein eL43 × 1 （P32046） 60S ribosomal protein L28 × 1 （Q5F346） 18S rRNA × 1 Small ribosomal subunit protein eS1 × 1 40S ribosomal protein S27 × 1 （A0A3Q2TV39） 40S ribosomal protein S28 × 1 （A0A3Q2U825） 40S ribosomal protein S2 × 1 （A0A8V0Z891） Small ribosomal subunit protein eS4 × 1 （P47836） Ribosomal protein eS30 × 1 40S ribosomal protein S26 × 1 （Q5ZM66） Small ribosomal subunit protein eS6 × 1 （P47838） 40S ribosomal protein S7 × 1 （F1NN16） 40S ribosomal protein S8 × 1 （F1NB02） 40S ribosomal protein S9 × 1 （B7NZS8） 40S ribosomal protein S11 × 1 （Q98TH5） Small ribosomal subunit protein uS15 × 1 （Q6ITC7） Ribosomal protein S14 × 1 （Q5ZHW8） 40S ribosomal protein S20 × 1 （F1NH93） Small ribosomal subunit protein eS21 × 1 40S ribosomal protein S15a × 1 （A0A3Q3A7P6） Small ribosomal subunit protein uS12 × 1 40S ribosomal protein S24 × 1 （F1NF89） Small ribosomal subunit protein uS2 × 1 （P50890） Ribosomal protein S16 × 1 （R4GGJ0） Ubiquitin × 1 （P79781） Ribosomal protein S5 × 1 （G1TFM5） Small ribosomal subunit protein RACK1 × 1 （P63247） 40S ribosomal protein S29 × 1 （A0A8V0Z8V3） Ribosomal protein S10 × 1 （E1C4N0） Small ribosomal subunit protein eS12 × 1 （P84175） Small ribosomal subunit protein uS19 × 1 （P62846） 40S ribosomal protein S18 × 1 （G1TPG3） 40S ribosomal protein S19 × 1 40S ribosomal protein S25 × 1 （A0A8V1A7V4） DNA-(apurinic or apyrimidinic site) lyase × 1 （F1NPA9） Phe tRNA × 1 Small ribosomal subunit protein eS17 × 1 （P08636） MG MAGNESIUM ION × 494 ZN ZINC ION × 7 ELECTRON MICROSCOPY cryo-EM buffer：pH 7.5 cryo-EM vitrification conditions：Cryogen ETHANE Resolution 2.50 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

Other PDB Difference from Current Entry 8Q7Z Assembly / Oligomeric State Construct Mutations and Modifications Ligands, Ions and Non-polymers Method and Experimental Conditions Structure Quality
8Q87 Structure of the G. gallus 80S rotated ribosome in complex with eEF2 and SERBP1 Deposited 2023-08-18 Different oligomeric state Different ligand/ion Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 80 PDB declaration: 85-meric
Chain Bb 1–71（71 aa）
Not recorded MG MAGNESIUM ION × 492 ZN ZINC ION × 8 GDP GUANOSINE-5'-DIPHOSPHATE × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 2.40 Å

1 other PDB entries and 1 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name A0A1L1RNZ2_CHICK
Isoform —
PDB entities 31
Chains and sequence ranges Author chain Bb； PDBConstruct 1–71； UniProt 1–71

Large ribosomal subunit protein eL30

OrganismNot specified

UniProt P67883

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein–RNA Heteromer Protein × 75 RNA 5 PDB declaration: 80-meric（80） Consistent with all polymer counts Chain Bc； UniProt 1–115 Not recorded 28S rRNA × 1 5.8S rRNA × 1 5S rRNA × 1 60S ribosomal protein L41 × 1 （A0A087WNH4） 60S ribosomal protein L8 × 1 （F1NIX0） Ribosomal protein uL3 × 1 （Q5ZJZ2） 60S ribosomal protein L4 C-terminal domain-containing protein × 1 （Q5ZII1） Large ribosomal subunit protein uL18 × 1 （P22451） 60S ribosomal protein L6 × 1 （Q8UWG7） Large ribosomal subunit protein uL30 × 1 （Q5ZJ56） Large ribosomal subunit protein eL8 × 1 （P32429） 60S ribosomal protein L9 × 1 （A0A1D5NVI1） Large ribosomal subunit protein uL16 × 1 （Q08200） 60S ribosomal protein L11 × 1 （A0A1D5P3B1） Large ribosomal subunit protein eL13 × 1 （P41125） 60S ribosomal protein L14 × 1 （Q98TF9） Ribosomal protein L15 × 1 （F1NQG5） Ribosomal protein uL13 × 1 60S ribosomal protein L17 × 1 （A0A1D5PR40） Ribosomal protein L18 × 1 Ribosomal protein L19 × 1 （Q5ZKK8） 60S ribosomal protein L18a × 1 60S ribosomal protein L21 × 1 （R4GIQ2） Large ribosomal subunit protein eL22 × 1 （Q98TF8） Large ribosomal subunit protein uL14 × 1 Ribosomal protein L24 × 1 （A0A8V0XRE7） Ribosomal protein uL23 × 1 Ribosomal protein L26 like 1 × 1 （F2Z4K6） Large ribosomal subunit protein eL27 × 1 （P61355） Ribosomal protein uL15 × 1 60S ribosomal protein L29 × 1 （A0A1L1RNZ2） 60S ribosomal protein L31 × 1 （A0A1L1RT94） Ribosomal protein L32 × 1 （E1BVB1） 60S ribosomal protein L35a × 1 （A0A8V0YS49） 60S ribosomal protein L34 × 1 （A0A1L1S0X5） Large ribosomal subunit protein uL29 × 1 （Q98TF7） Large ribosomal subunit protein eL36 × 1 （Q98TF6） Ribosomal protein L37 × 1 （E1C810） 60S ribosomal protein L38 × 1 （E1BU66） Large ribosomal subunit protein eL39 × 1 （Q98TF5） Ubiquitin-60S ribosomal protein L40 × 1 （O42388） Ribosomal protein L36a like × 1 （A0A8V0YUB1） Large ribosomal subunit protein eL43 × 1 （P32046） 60S ribosomal protein L28 × 1 （Q5F346） 18S rRNA × 1 Small ribosomal subunit protein eS1 × 1 40S ribosomal protein S27 × 1 （A0A3Q2TV39） 40S ribosomal protein S28 × 1 （A0A3Q2U825） 40S ribosomal protein S2 × 1 （A0A8V0Z891） Small ribosomal subunit protein eS4 × 1 （P47836） Ribosomal protein eS30 × 1 40S ribosomal protein S26 × 1 （Q5ZM66） Small ribosomal subunit protein eS6 × 1 （P47838） 40S ribosomal protein S7 × 1 （F1NN16） 40S ribosomal protein S8 × 1 （F1NB02） 40S ribosomal protein S9 × 1 （B7NZS8） 40S ribosomal protein S11 × 1 （Q98TH5） Small ribosomal subunit protein uS15 × 1 （Q6ITC7） Ribosomal protein S14 × 1 （Q5ZHW8） 40S ribosomal protein S20 × 1 （F1NH93） Small ribosomal subunit protein eS21 × 1 40S ribosomal protein S15a × 1 （A0A3Q3A7P6） Small ribosomal subunit protein uS12 × 1 40S ribosomal protein S24 × 1 （F1NF89） Small ribosomal subunit protein uS2 × 1 （P50890） Ribosomal protein S16 × 1 （R4GGJ0） Ubiquitin × 1 （P79781） Ribosomal protein S5 × 1 （G1TFM5） Small ribosomal subunit protein RACK1 × 1 （P63247） 40S ribosomal protein S29 × 1 （A0A8V0Z8V3） Ribosomal protein S10 × 1 （E1C4N0） Small ribosomal subunit protein eS12 × 1 （P84175） Small ribosomal subunit protein uS19 × 1 （P62846） 40S ribosomal protein S18 × 1 （G1TPG3） 40S ribosomal protein S19 × 1 40S ribosomal protein S25 × 1 （A0A8V1A7V4） DNA-(apurinic or apyrimidinic site) lyase × 1 （F1NPA9） Phe tRNA × 1 Small ribosomal subunit protein eS17 × 1 （P08636） MG MAGNESIUM ION × 494 ZN ZINC ION × 7 ELECTRON MICROSCOPY cryo-EM buffer：pH 7.5 cryo-EM vitrification conditions：Cryogen ETHANE Resolution 2.50 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

Other PDB Difference from Current Entry 8Q7Z Assembly / Oligomeric State Construct Mutations and Modifications Ligands, Ions and Non-polymers Method and Experimental Conditions Structure Quality
6KVM Crystal structure of Chicken MHC Class II for 1.9 angstrom Deposited 2019-09-04 Different construct Different oligomeric state Different ligand/ion Different experimental method Different experimental conditions Different structure-quality metrics Assembly 1 Protein heterocomplex Heteromer；Protein × 3 PDB declaration: trimeric
Chain C 99–115（17 aa）
Not recorded GOL GLYCEROL × 1 X-RAY DIFFRACTION
X-ray crystallization conditions VAPOR DIFFUSION, SITTING DROP；pH 8.5；291 K；30% PEG 4000, 100mM Tris base/Hydrochloric acid pH 8.5, 200mM Lithium sulfate
Resolution 1.90 Å R-free 0.227
8Q87 Structure of the G. gallus 80S rotated ribosome in complex with eEF2 and SERBP1 Deposited 2023-08-18 Different oligomeric state Different ligand/ion Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 80 PDB declaration: 85-meric
Chain Bc 1–115（115 aa）
Not recorded MG MAGNESIUM ION × 492 ZN ZINC ION × 8 GDP GUANOSINE-5'-DIPHOSPHATE × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 2.40 Å

2 other PDB entries and 2 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name RL30_CHICK
Isoform —
PDB entities 32
Chains and sequence ranges Author chain Bc； PDBConstruct 1–115； UniProt 1–115

60S ribosomal protein L31

OrganismNot specified

UniProt A0A1L1RT94

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein–RNA Heteromer Protein × 75 RNA 5 PDB declaration: 80-meric（80） Consistent with all polymer counts Chain Bd； UniProt 1–176 Not recorded 28S rRNA × 1 5.8S rRNA × 1 5S rRNA × 1 60S ribosomal protein L41 × 1 （A0A087WNH4） 60S ribosomal protein L8 × 1 （F1NIX0） Ribosomal protein uL3 × 1 （Q5ZJZ2） 60S ribosomal protein L4 C-terminal domain-containing protein × 1 （Q5ZII1） Large ribosomal subunit protein uL18 × 1 （P22451） 60S ribosomal protein L6 × 1 （Q8UWG7） Large ribosomal subunit protein uL30 × 1 （Q5ZJ56） Large ribosomal subunit protein eL8 × 1 （P32429） 60S ribosomal protein L9 × 1 （A0A1D5NVI1） Large ribosomal subunit protein uL16 × 1 （Q08200） 60S ribosomal protein L11 × 1 （A0A1D5P3B1） Large ribosomal subunit protein eL13 × 1 （P41125） 60S ribosomal protein L14 × 1 （Q98TF9） Ribosomal protein L15 × 1 （F1NQG5） Ribosomal protein uL13 × 1 60S ribosomal protein L17 × 1 （A0A1D5PR40） Ribosomal protein L18 × 1 Ribosomal protein L19 × 1 （Q5ZKK8） 60S ribosomal protein L18a × 1 60S ribosomal protein L21 × 1 （R4GIQ2） Large ribosomal subunit protein eL22 × 1 （Q98TF8） Large ribosomal subunit protein uL14 × 1 Ribosomal protein L24 × 1 （A0A8V0XRE7） Ribosomal protein uL23 × 1 Ribosomal protein L26 like 1 × 1 （F2Z4K6） Large ribosomal subunit protein eL27 × 1 （P61355） Ribosomal protein uL15 × 1 60S ribosomal protein L29 × 1 （A0A1L1RNZ2） Large ribosomal subunit protein eL30 × 1 （P67883） Ribosomal protein L32 × 1 （E1BVB1） 60S ribosomal protein L35a × 1 （A0A8V0YS49） 60S ribosomal protein L34 × 1 （A0A1L1S0X5） Large ribosomal subunit protein uL29 × 1 （Q98TF7） Large ribosomal subunit protein eL36 × 1 （Q98TF6） Ribosomal protein L37 × 1 （E1C810） 60S ribosomal protein L38 × 1 （E1BU66） Large ribosomal subunit protein eL39 × 1 （Q98TF5） Ubiquitin-60S ribosomal protein L40 × 1 （O42388） Ribosomal protein L36a like × 1 （A0A8V0YUB1） Large ribosomal subunit protein eL43 × 1 （P32046） 60S ribosomal protein L28 × 1 （Q5F346） 18S rRNA × 1 Small ribosomal subunit protein eS1 × 1 40S ribosomal protein S27 × 1 （A0A3Q2TV39） 40S ribosomal protein S28 × 1 （A0A3Q2U825） 40S ribosomal protein S2 × 1 （A0A8V0Z891） Small ribosomal subunit protein eS4 × 1 （P47836） Ribosomal protein eS30 × 1 40S ribosomal protein S26 × 1 （Q5ZM66） Small ribosomal subunit protein eS6 × 1 （P47838） 40S ribosomal protein S7 × 1 （F1NN16） 40S ribosomal protein S8 × 1 （F1NB02） 40S ribosomal protein S9 × 1 （B7NZS8） 40S ribosomal protein S11 × 1 （Q98TH5） Small ribosomal subunit protein uS15 × 1 （Q6ITC7） Ribosomal protein S14 × 1 （Q5ZHW8） 40S ribosomal protein S20 × 1 （F1NH93） Small ribosomal subunit protein eS21 × 1 40S ribosomal protein S15a × 1 （A0A3Q3A7P6） Small ribosomal subunit protein uS12 × 1 40S ribosomal protein S24 × 1 （F1NF89） Small ribosomal subunit protein uS2 × 1 （P50890） Ribosomal protein S16 × 1 （R4GGJ0） Ubiquitin × 1 （P79781） Ribosomal protein S5 × 1 （G1TFM5） Small ribosomal subunit protein RACK1 × 1 （P63247） 40S ribosomal protein S29 × 1 （A0A8V0Z8V3） Ribosomal protein S10 × 1 （E1C4N0） Small ribosomal subunit protein eS12 × 1 （P84175） Small ribosomal subunit protein uS19 × 1 （P62846） 40S ribosomal protein S18 × 1 （G1TPG3） 40S ribosomal protein S19 × 1 40S ribosomal protein S25 × 1 （A0A8V1A7V4） DNA-(apurinic or apyrimidinic site) lyase × 1 （F1NPA9） Phe tRNA × 1 Small ribosomal subunit protein eS17 × 1 （P08636） MG MAGNESIUM ION × 494 ZN ZINC ION × 7 ELECTRON MICROSCOPY cryo-EM buffer：pH 7.5 cryo-EM vitrification conditions：Cryogen ETHANE Resolution 2.50 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

Other PDB Difference from Current Entry 8Q7Z Assembly / Oligomeric State Construct Mutations and Modifications Ligands, Ions and Non-polymers Method and Experimental Conditions Structure Quality
8Q87 Structure of the G. gallus 80S rotated ribosome in complex with eEF2 and SERBP1 Deposited 2023-08-18 Different oligomeric state Different ligand/ion Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 80 PDB declaration: 85-meric
Chain Bd 1–176（176 aa）
Not recorded MG MAGNESIUM ION × 492 ZN ZINC ION × 8 GDP GUANOSINE-5'-DIPHOSPHATE × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 2.40 Å

1 other PDB entries and 1 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name A0A1L1RT94_CHICK
Isoform —
PDB entities 33
Chains and sequence ranges Author chain Bd； PDBConstruct 1–176； UniProt 1–176

Ribosomal protein L32

OrganismNot specified

UniProt E1BVB1

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein–RNA Heteromer Protein × 75 RNA 5 PDB declaration: 80-meric（80） Consistent with all polymer counts Chain Be； UniProt 1–135 Not recorded 28S rRNA × 1 5.8S rRNA × 1 5S rRNA × 1 60S ribosomal protein L41 × 1 （A0A087WNH4） 60S ribosomal protein L8 × 1 （F1NIX0） Ribosomal protein uL3 × 1 （Q5ZJZ2） 60S ribosomal protein L4 C-terminal domain-containing protein × 1 （Q5ZII1） Large ribosomal subunit protein uL18 × 1 （P22451） 60S ribosomal protein L6 × 1 （Q8UWG7） Large ribosomal subunit protein uL30 × 1 （Q5ZJ56） Large ribosomal subunit protein eL8 × 1 （P32429） 60S ribosomal protein L9 × 1 （A0A1D5NVI1） Large ribosomal subunit protein uL16 × 1 （Q08200） 60S ribosomal protein L11 × 1 （A0A1D5P3B1） Large ribosomal subunit protein eL13 × 1 （P41125） 60S ribosomal protein L14 × 1 （Q98TF9） Ribosomal protein L15 × 1 （F1NQG5） Ribosomal protein uL13 × 1 60S ribosomal protein L17 × 1 （A0A1D5PR40） Ribosomal protein L18 × 1 Ribosomal protein L19 × 1 （Q5ZKK8） 60S ribosomal protein L18a × 1 60S ribosomal protein L21 × 1 （R4GIQ2） Large ribosomal subunit protein eL22 × 1 （Q98TF8） Large ribosomal subunit protein uL14 × 1 Ribosomal protein L24 × 1 （A0A8V0XRE7） Ribosomal protein uL23 × 1 Ribosomal protein L26 like 1 × 1 （F2Z4K6） Large ribosomal subunit protein eL27 × 1 （P61355） Ribosomal protein uL15 × 1 60S ribosomal protein L29 × 1 （A0A1L1RNZ2） Large ribosomal subunit protein eL30 × 1 （P67883） 60S ribosomal protein L31 × 1 （A0A1L1RT94） 60S ribosomal protein L35a × 1 （A0A8V0YS49） 60S ribosomal protein L34 × 1 （A0A1L1S0X5） Large ribosomal subunit protein uL29 × 1 （Q98TF7） Large ribosomal subunit protein eL36 × 1 （Q98TF6） Ribosomal protein L37 × 1 （E1C810） 60S ribosomal protein L38 × 1 （E1BU66） Large ribosomal subunit protein eL39 × 1 （Q98TF5） Ubiquitin-60S ribosomal protein L40 × 1 （O42388） Ribosomal protein L36a like × 1 （A0A8V0YUB1） Large ribosomal subunit protein eL43 × 1 （P32046） 60S ribosomal protein L28 × 1 （Q5F346） 18S rRNA × 1 Small ribosomal subunit protein eS1 × 1 40S ribosomal protein S27 × 1 （A0A3Q2TV39） 40S ribosomal protein S28 × 1 （A0A3Q2U825） 40S ribosomal protein S2 × 1 （A0A8V0Z891） Small ribosomal subunit protein eS4 × 1 （P47836） Ribosomal protein eS30 × 1 40S ribosomal protein S26 × 1 （Q5ZM66） Small ribosomal subunit protein eS6 × 1 （P47838） 40S ribosomal protein S7 × 1 （F1NN16） 40S ribosomal protein S8 × 1 （F1NB02） 40S ribosomal protein S9 × 1 （B7NZS8） 40S ribosomal protein S11 × 1 （Q98TH5） Small ribosomal subunit protein uS15 × 1 （Q6ITC7） Ribosomal protein S14 × 1 （Q5ZHW8） 40S ribosomal protein S20 × 1 （F1NH93） Small ribosomal subunit protein eS21 × 1 40S ribosomal protein S15a × 1 （A0A3Q3A7P6） Small ribosomal subunit protein uS12 × 1 40S ribosomal protein S24 × 1 （F1NF89） Small ribosomal subunit protein uS2 × 1 （P50890） Ribosomal protein S16 × 1 （R4GGJ0） Ubiquitin × 1 （P79781） Ribosomal protein S5 × 1 （G1TFM5） Small ribosomal subunit protein RACK1 × 1 （P63247） 40S ribosomal protein S29 × 1 （A0A8V0Z8V3） Ribosomal protein S10 × 1 （E1C4N0） Small ribosomal subunit protein eS12 × 1 （P84175） Small ribosomal subunit protein uS19 × 1 （P62846） 40S ribosomal protein S18 × 1 （G1TPG3） 40S ribosomal protein S19 × 1 40S ribosomal protein S25 × 1 （A0A8V1A7V4） DNA-(apurinic or apyrimidinic site) lyase × 1 （F1NPA9） Phe tRNA × 1 Small ribosomal subunit protein eS17 × 1 （P08636） MG MAGNESIUM ION × 494 ZN ZINC ION × 7 ELECTRON MICROSCOPY cryo-EM buffer：pH 7.5 cryo-EM vitrification conditions：Cryogen ETHANE Resolution 2.50 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

Other PDB Difference from Current Entry 8Q7Z Assembly / Oligomeric State Construct Mutations and Modifications Ligands, Ions and Non-polymers Method and Experimental Conditions Structure Quality
8Q87 Structure of the G. gallus 80S rotated ribosome in complex with eEF2 and SERBP1 Deposited 2023-08-18 Different oligomeric state Different ligand/ion Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 80 PDB declaration: 85-meric
Chain Be 1–135（135 aa）
Not recorded MG MAGNESIUM ION × 492 ZN ZINC ION × 8 GDP GUANOSINE-5'-DIPHOSPHATE × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 2.40 Å

1 other PDB entries and 1 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name E1BVB1_CHICK
Isoform —
PDB entities 34
Chains and sequence ranges Author chain Be； PDBConstruct 1–135； UniProt 1–135

60S ribosomal protein L35a

OrganismNot specified

UniProt A0A8V0YS49

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein–RNA Heteromer Protein × 75 RNA 5 PDB declaration: 80-meric（80） Consistent with all polymer counts Chain Bf； UniProt 1–109 Not recorded 28S rRNA × 1 5.8S rRNA × 1 5S rRNA × 1 60S ribosomal protein L41 × 1 （A0A087WNH4） 60S ribosomal protein L8 × 1 （F1NIX0） Ribosomal protein uL3 × 1 （Q5ZJZ2） 60S ribosomal protein L4 C-terminal domain-containing protein × 1 （Q5ZII1） Large ribosomal subunit protein uL18 × 1 （P22451） 60S ribosomal protein L6 × 1 （Q8UWG7） Large ribosomal subunit protein uL30 × 1 （Q5ZJ56） Large ribosomal subunit protein eL8 × 1 （P32429） 60S ribosomal protein L9 × 1 （A0A1D5NVI1） Large ribosomal subunit protein uL16 × 1 （Q08200） 60S ribosomal protein L11 × 1 （A0A1D5P3B1） Large ribosomal subunit protein eL13 × 1 （P41125） 60S ribosomal protein L14 × 1 （Q98TF9） Ribosomal protein L15 × 1 （F1NQG5） Ribosomal protein uL13 × 1 60S ribosomal protein L17 × 1 （A0A1D5PR40） Ribosomal protein L18 × 1 Ribosomal protein L19 × 1 （Q5ZKK8） 60S ribosomal protein L18a × 1 60S ribosomal protein L21 × 1 （R4GIQ2） Large ribosomal subunit protein eL22 × 1 （Q98TF8） Large ribosomal subunit protein uL14 × 1 Ribosomal protein L24 × 1 （A0A8V0XRE7） Ribosomal protein uL23 × 1 Ribosomal protein L26 like 1 × 1 （F2Z4K6） Large ribosomal subunit protein eL27 × 1 （P61355） Ribosomal protein uL15 × 1 60S ribosomal protein L29 × 1 （A0A1L1RNZ2） Large ribosomal subunit protein eL30 × 1 （P67883） 60S ribosomal protein L31 × 1 （A0A1L1RT94） Ribosomal protein L32 × 1 （E1BVB1） 60S ribosomal protein L34 × 1 （A0A1L1S0X5） Large ribosomal subunit protein uL29 × 1 （Q98TF7） Large ribosomal subunit protein eL36 × 1 （Q98TF6） Ribosomal protein L37 × 1 （E1C810） 60S ribosomal protein L38 × 1 （E1BU66） Large ribosomal subunit protein eL39 × 1 （Q98TF5） Ubiquitin-60S ribosomal protein L40 × 1 （O42388） Ribosomal protein L36a like × 1 （A0A8V0YUB1） Large ribosomal subunit protein eL43 × 1 （P32046） 60S ribosomal protein L28 × 1 （Q5F346） 18S rRNA × 1 Small ribosomal subunit protein eS1 × 1 40S ribosomal protein S27 × 1 （A0A3Q2TV39） 40S ribosomal protein S28 × 1 （A0A3Q2U825） 40S ribosomal protein S2 × 1 （A0A8V0Z891） Small ribosomal subunit protein eS4 × 1 （P47836） Ribosomal protein eS30 × 1 40S ribosomal protein S26 × 1 （Q5ZM66） Small ribosomal subunit protein eS6 × 1 （P47838） 40S ribosomal protein S7 × 1 （F1NN16） 40S ribosomal protein S8 × 1 （F1NB02） 40S ribosomal protein S9 × 1 （B7NZS8） 40S ribosomal protein S11 × 1 （Q98TH5） Small ribosomal subunit protein uS15 × 1 （Q6ITC7） Ribosomal protein S14 × 1 （Q5ZHW8） 40S ribosomal protein S20 × 1 （F1NH93） Small ribosomal subunit protein eS21 × 1 40S ribosomal protein S15a × 1 （A0A3Q3A7P6） Small ribosomal subunit protein uS12 × 1 40S ribosomal protein S24 × 1 （F1NF89） Small ribosomal subunit protein uS2 × 1 （P50890） Ribosomal protein S16 × 1 （R4GGJ0） Ubiquitin × 1 （P79781） Ribosomal protein S5 × 1 （G1TFM5） Small ribosomal subunit protein RACK1 × 1 （P63247） 40S ribosomal protein S29 × 1 （A0A8V0Z8V3） Ribosomal protein S10 × 1 （E1C4N0） Small ribosomal subunit protein eS12 × 1 （P84175） Small ribosomal subunit protein uS19 × 1 （P62846） 40S ribosomal protein S18 × 1 （G1TPG3） 40S ribosomal protein S19 × 1 40S ribosomal protein S25 × 1 （A0A8V1A7V4） DNA-(apurinic or apyrimidinic site) lyase × 1 （F1NPA9） Phe tRNA × 1 Small ribosomal subunit protein eS17 × 1 （P08636） MG MAGNESIUM ION × 494 ZN ZINC ION × 7 ELECTRON MICROSCOPY cryo-EM buffer：pH 7.5 cryo-EM vitrification conditions：Cryogen ETHANE Resolution 2.50 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

No other PDB entry for the same UniProt protein was found.

View Construct and Data Evidence
UniProt name A0A8V0YS49_CHICK
Isoform —
PDB entities 35
Chains and sequence ranges Author chain Bf； PDBConstruct 1–110； UniProt 1–109

60S ribosomal protein L34

OrganismNot specified

UniProt A0A1L1S0X5

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein–RNA Heteromer Protein × 75 RNA 5 PDB declaration: 80-meric（80） Consistent with all polymer counts Chain Bg； UniProt 1–117 Not recorded 28S rRNA × 1 5.8S rRNA × 1 5S rRNA × 1 60S ribosomal protein L41 × 1 （A0A087WNH4） 60S ribosomal protein L8 × 1 （F1NIX0） Ribosomal protein uL3 × 1 （Q5ZJZ2） 60S ribosomal protein L4 C-terminal domain-containing protein × 1 （Q5ZII1） Large ribosomal subunit protein uL18 × 1 （P22451） 60S ribosomal protein L6 × 1 （Q8UWG7） Large ribosomal subunit protein uL30 × 1 （Q5ZJ56） Large ribosomal subunit protein eL8 × 1 （P32429） 60S ribosomal protein L9 × 1 （A0A1D5NVI1） Large ribosomal subunit protein uL16 × 1 （Q08200） 60S ribosomal protein L11 × 1 （A0A1D5P3B1） Large ribosomal subunit protein eL13 × 1 （P41125） 60S ribosomal protein L14 × 1 （Q98TF9） Ribosomal protein L15 × 1 （F1NQG5） Ribosomal protein uL13 × 1 60S ribosomal protein L17 × 1 （A0A1D5PR40） Ribosomal protein L18 × 1 Ribosomal protein L19 × 1 （Q5ZKK8） 60S ribosomal protein L18a × 1 60S ribosomal protein L21 × 1 （R4GIQ2） Large ribosomal subunit protein eL22 × 1 （Q98TF8） Large ribosomal subunit protein uL14 × 1 Ribosomal protein L24 × 1 （A0A8V0XRE7） Ribosomal protein uL23 × 1 Ribosomal protein L26 like 1 × 1 （F2Z4K6） Large ribosomal subunit protein eL27 × 1 （P61355） Ribosomal protein uL15 × 1 60S ribosomal protein L29 × 1 （A0A1L1RNZ2） Large ribosomal subunit protein eL30 × 1 （P67883） 60S ribosomal protein L31 × 1 （A0A1L1RT94） Ribosomal protein L32 × 1 （E1BVB1） 60S ribosomal protein L35a × 1 （A0A8V0YS49） Large ribosomal subunit protein uL29 × 1 （Q98TF7） Large ribosomal subunit protein eL36 × 1 （Q98TF6） Ribosomal protein L37 × 1 （E1C810） 60S ribosomal protein L38 × 1 （E1BU66） Large ribosomal subunit protein eL39 × 1 （Q98TF5） Ubiquitin-60S ribosomal protein L40 × 1 （O42388） Ribosomal protein L36a like × 1 （A0A8V0YUB1） Large ribosomal subunit protein eL43 × 1 （P32046） 60S ribosomal protein L28 × 1 （Q5F346） 18S rRNA × 1 Small ribosomal subunit protein eS1 × 1 40S ribosomal protein S27 × 1 （A0A3Q2TV39） 40S ribosomal protein S28 × 1 （A0A3Q2U825） 40S ribosomal protein S2 × 1 （A0A8V0Z891） Small ribosomal subunit protein eS4 × 1 （P47836） Ribosomal protein eS30 × 1 40S ribosomal protein S26 × 1 （Q5ZM66） Small ribosomal subunit protein eS6 × 1 （P47838） 40S ribosomal protein S7 × 1 （F1NN16） 40S ribosomal protein S8 × 1 （F1NB02） 40S ribosomal protein S9 × 1 （B7NZS8） 40S ribosomal protein S11 × 1 （Q98TH5） Small ribosomal subunit protein uS15 × 1 （Q6ITC7） Ribosomal protein S14 × 1 （Q5ZHW8） 40S ribosomal protein S20 × 1 （F1NH93） Small ribosomal subunit protein eS21 × 1 40S ribosomal protein S15a × 1 （A0A3Q3A7P6） Small ribosomal subunit protein uS12 × 1 40S ribosomal protein S24 × 1 （F1NF89） Small ribosomal subunit protein uS2 × 1 （P50890） Ribosomal protein S16 × 1 （R4GGJ0） Ubiquitin × 1 （P79781） Ribosomal protein S5 × 1 （G1TFM5） Small ribosomal subunit protein RACK1 × 1 （P63247） 40S ribosomal protein S29 × 1 （A0A8V0Z8V3） Ribosomal protein S10 × 1 （E1C4N0） Small ribosomal subunit protein eS12 × 1 （P84175） Small ribosomal subunit protein uS19 × 1 （P62846） 40S ribosomal protein S18 × 1 （G1TPG3） 40S ribosomal protein S19 × 1 40S ribosomal protein S25 × 1 （A0A8V1A7V4） DNA-(apurinic or apyrimidinic site) lyase × 1 （F1NPA9） Phe tRNA × 1 Small ribosomal subunit protein eS17 × 1 （P08636） MG MAGNESIUM ION × 494 ZN ZINC ION × 7 ELECTRON MICROSCOPY cryo-EM buffer：pH 7.5 cryo-EM vitrification conditions：Cryogen ETHANE Resolution 2.50 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

Other PDB Difference from Current Entry 8Q7Z Assembly / Oligomeric State Construct Mutations and Modifications Ligands, Ions and Non-polymers Method and Experimental Conditions Structure Quality
8Q87 Structure of the G. gallus 80S rotated ribosome in complex with eEF2 and SERBP1 Deposited 2023-08-18 Different oligomeric state Different ligand/ion Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 80 PDB declaration: 85-meric
Chain Bg 1–117（117 aa）
Not recorded MG MAGNESIUM ION × 492 ZN ZINC ION × 8 GDP GUANOSINE-5'-DIPHOSPHATE × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 2.40 Å

1 other PDB entries and 1 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name A0A1L1S0X5_CHICK
Isoform —
PDB entities 36
Chains and sequence ranges Author chain Bg； PDBConstruct 1–117； UniProt 1–117

Large ribosomal subunit protein uL29

OrganismNot specified

UniProt Q98TF7

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein–RNA Heteromer Protein × 75 RNA 5 PDB declaration: 80-meric（80） Consistent with all polymer counts Chain Bh； UniProt 1–123 Not recorded 28S rRNA × 1 5.8S rRNA × 1 5S rRNA × 1 60S ribosomal protein L41 × 1 （A0A087WNH4） 60S ribosomal protein L8 × 1 （F1NIX0） Ribosomal protein uL3 × 1 （Q5ZJZ2） 60S ribosomal protein L4 C-terminal domain-containing protein × 1 （Q5ZII1） Large ribosomal subunit protein uL18 × 1 （P22451） 60S ribosomal protein L6 × 1 （Q8UWG7） Large ribosomal subunit protein uL30 × 1 （Q5ZJ56） Large ribosomal subunit protein eL8 × 1 （P32429） 60S ribosomal protein L9 × 1 （A0A1D5NVI1） Large ribosomal subunit protein uL16 × 1 （Q08200） 60S ribosomal protein L11 × 1 （A0A1D5P3B1） Large ribosomal subunit protein eL13 × 1 （P41125） 60S ribosomal protein L14 × 1 （Q98TF9） Ribosomal protein L15 × 1 （F1NQG5） Ribosomal protein uL13 × 1 60S ribosomal protein L17 × 1 （A0A1D5PR40） Ribosomal protein L18 × 1 Ribosomal protein L19 × 1 （Q5ZKK8） 60S ribosomal protein L18a × 1 60S ribosomal protein L21 × 1 （R4GIQ2） Large ribosomal subunit protein eL22 × 1 （Q98TF8） Large ribosomal subunit protein uL14 × 1 Ribosomal protein L24 × 1 （A0A8V0XRE7） Ribosomal protein uL23 × 1 Ribosomal protein L26 like 1 × 1 （F2Z4K6） Large ribosomal subunit protein eL27 × 1 （P61355） Ribosomal protein uL15 × 1 60S ribosomal protein L29 × 1 （A0A1L1RNZ2） Large ribosomal subunit protein eL30 × 1 （P67883） 60S ribosomal protein L31 × 1 （A0A1L1RT94） Ribosomal protein L32 × 1 （E1BVB1） 60S ribosomal protein L35a × 1 （A0A8V0YS49） 60S ribosomal protein L34 × 1 （A0A1L1S0X5） Large ribosomal subunit protein eL36 × 1 （Q98TF6） Ribosomal protein L37 × 1 （E1C810） 60S ribosomal protein L38 × 1 （E1BU66） Large ribosomal subunit protein eL39 × 1 （Q98TF5） Ubiquitin-60S ribosomal protein L40 × 1 （O42388） Ribosomal protein L36a like × 1 （A0A8V0YUB1） Large ribosomal subunit protein eL43 × 1 （P32046） 60S ribosomal protein L28 × 1 （Q5F346） 18S rRNA × 1 Small ribosomal subunit protein eS1 × 1 40S ribosomal protein S27 × 1 （A0A3Q2TV39） 40S ribosomal protein S28 × 1 （A0A3Q2U825） 40S ribosomal protein S2 × 1 （A0A8V0Z891） Small ribosomal subunit protein eS4 × 1 （P47836） Ribosomal protein eS30 × 1 40S ribosomal protein S26 × 1 （Q5ZM66） Small ribosomal subunit protein eS6 × 1 （P47838） 40S ribosomal protein S7 × 1 （F1NN16） 40S ribosomal protein S8 × 1 （F1NB02） 40S ribosomal protein S9 × 1 （B7NZS8） 40S ribosomal protein S11 × 1 （Q98TH5） Small ribosomal subunit protein uS15 × 1 （Q6ITC7） Ribosomal protein S14 × 1 （Q5ZHW8） 40S ribosomal protein S20 × 1 （F1NH93） Small ribosomal subunit protein eS21 × 1 40S ribosomal protein S15a × 1 （A0A3Q3A7P6） Small ribosomal subunit protein uS12 × 1 40S ribosomal protein S24 × 1 （F1NF89） Small ribosomal subunit protein uS2 × 1 （P50890） Ribosomal protein S16 × 1 （R4GGJ0） Ubiquitin × 1 （P79781） Ribosomal protein S5 × 1 （G1TFM5） Small ribosomal subunit protein RACK1 × 1 （P63247） 40S ribosomal protein S29 × 1 （A0A8V0Z8V3） Ribosomal protein S10 × 1 （E1C4N0） Small ribosomal subunit protein eS12 × 1 （P84175） Small ribosomal subunit protein uS19 × 1 （P62846） 40S ribosomal protein S18 × 1 （G1TPG3） 40S ribosomal protein S19 × 1 40S ribosomal protein S25 × 1 （A0A8V1A7V4） DNA-(apurinic or apyrimidinic site) lyase × 1 （F1NPA9） Phe tRNA × 1 Small ribosomal subunit protein eS17 × 1 （P08636） MG MAGNESIUM ION × 494 ZN ZINC ION × 7 ELECTRON MICROSCOPY cryo-EM buffer：pH 7.5 cryo-EM vitrification conditions：Cryogen ETHANE Resolution 2.50 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

Other PDB Difference from Current Entry 8Q7Z Assembly / Oligomeric State Construct Mutations and Modifications Ligands, Ions and Non-polymers Method and Experimental Conditions Structure Quality
8Q87 Structure of the G. gallus 80S rotated ribosome in complex with eEF2 and SERBP1 Deposited 2023-08-18 Different oligomeric state Different ligand/ion Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 80 PDB declaration: 85-meric
Chain Bh 1–123（123 aa）
Not recorded MG MAGNESIUM ION × 492 ZN ZINC ION × 8 GDP GUANOSINE-5'-DIPHOSPHATE × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 2.40 Å

1 other PDB entries and 1 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name RL35_CHICK
Isoform —
PDB entities 37
Chains and sequence ranges Author chain Bh； PDBConstruct 1–123； UniProt 1–123

Large ribosomal subunit protein eL36

OrganismNot specified

UniProt Q98TF6

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein–RNA Heteromer Protein × 75 RNA 5 PDB declaration: 80-meric（80） Consistent with all polymer counts Chain Bi； UniProt 1–105 Not recorded 28S rRNA × 1 5.8S rRNA × 1 5S rRNA × 1 60S ribosomal protein L41 × 1 （A0A087WNH4） 60S ribosomal protein L8 × 1 （F1NIX0） Ribosomal protein uL3 × 1 （Q5ZJZ2） 60S ribosomal protein L4 C-terminal domain-containing protein × 1 （Q5ZII1） Large ribosomal subunit protein uL18 × 1 （P22451） 60S ribosomal protein L6 × 1 （Q8UWG7） Large ribosomal subunit protein uL30 × 1 （Q5ZJ56） Large ribosomal subunit protein eL8 × 1 （P32429） 60S ribosomal protein L9 × 1 （A0A1D5NVI1） Large ribosomal subunit protein uL16 × 1 （Q08200） 60S ribosomal protein L11 × 1 （A0A1D5P3B1） Large ribosomal subunit protein eL13 × 1 （P41125） 60S ribosomal protein L14 × 1 （Q98TF9） Ribosomal protein L15 × 1 （F1NQG5） Ribosomal protein uL13 × 1 60S ribosomal protein L17 × 1 （A0A1D5PR40） Ribosomal protein L18 × 1 Ribosomal protein L19 × 1 （Q5ZKK8） 60S ribosomal protein L18a × 1 60S ribosomal protein L21 × 1 （R4GIQ2） Large ribosomal subunit protein eL22 × 1 （Q98TF8） Large ribosomal subunit protein uL14 × 1 Ribosomal protein L24 × 1 （A0A8V0XRE7） Ribosomal protein uL23 × 1 Ribosomal protein L26 like 1 × 1 （F2Z4K6） Large ribosomal subunit protein eL27 × 1 （P61355） Ribosomal protein uL15 × 1 60S ribosomal protein L29 × 1 （A0A1L1RNZ2） Large ribosomal subunit protein eL30 × 1 （P67883） 60S ribosomal protein L31 × 1 （A0A1L1RT94） Ribosomal protein L32 × 1 （E1BVB1） 60S ribosomal protein L35a × 1 （A0A8V0YS49） 60S ribosomal protein L34 × 1 （A0A1L1S0X5） Large ribosomal subunit protein uL29 × 1 （Q98TF7） Ribosomal protein L37 × 1 （E1C810） 60S ribosomal protein L38 × 1 （E1BU66） Large ribosomal subunit protein eL39 × 1 （Q98TF5） Ubiquitin-60S ribosomal protein L40 × 1 （O42388） Ribosomal protein L36a like × 1 （A0A8V0YUB1） Large ribosomal subunit protein eL43 × 1 （P32046） 60S ribosomal protein L28 × 1 （Q5F346） 18S rRNA × 1 Small ribosomal subunit protein eS1 × 1 40S ribosomal protein S27 × 1 （A0A3Q2TV39） 40S ribosomal protein S28 × 1 （A0A3Q2U825） 40S ribosomal protein S2 × 1 （A0A8V0Z891） Small ribosomal subunit protein eS4 × 1 （P47836） Ribosomal protein eS30 × 1 40S ribosomal protein S26 × 1 （Q5ZM66） Small ribosomal subunit protein eS6 × 1 （P47838） 40S ribosomal protein S7 × 1 （F1NN16） 40S ribosomal protein S8 × 1 （F1NB02） 40S ribosomal protein S9 × 1 （B7NZS8） 40S ribosomal protein S11 × 1 （Q98TH5） Small ribosomal subunit protein uS15 × 1 （Q6ITC7） Ribosomal protein S14 × 1 （Q5ZHW8） 40S ribosomal protein S20 × 1 （F1NH93） Small ribosomal subunit protein eS21 × 1 40S ribosomal protein S15a × 1 （A0A3Q3A7P6） Small ribosomal subunit protein uS12 × 1 40S ribosomal protein S24 × 1 （F1NF89） Small ribosomal subunit protein uS2 × 1 （P50890） Ribosomal protein S16 × 1 （R4GGJ0） Ubiquitin × 1 （P79781） Ribosomal protein S5 × 1 （G1TFM5） Small ribosomal subunit protein RACK1 × 1 （P63247） 40S ribosomal protein S29 × 1 （A0A8V0Z8V3） Ribosomal protein S10 × 1 （E1C4N0） Small ribosomal subunit protein eS12 × 1 （P84175） Small ribosomal subunit protein uS19 × 1 （P62846） 40S ribosomal protein S18 × 1 （G1TPG3） 40S ribosomal protein S19 × 1 40S ribosomal protein S25 × 1 （A0A8V1A7V4） DNA-(apurinic or apyrimidinic site) lyase × 1 （F1NPA9） Phe tRNA × 1 Small ribosomal subunit protein eS17 × 1 （P08636） MG MAGNESIUM ION × 494 ZN ZINC ION × 7 ELECTRON MICROSCOPY cryo-EM buffer：pH 7.5 cryo-EM vitrification conditions：Cryogen ETHANE Resolution 2.50 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

Other PDB Difference from Current Entry 8Q7Z Assembly / Oligomeric State Construct Mutations and Modifications Ligands, Ions and Non-polymers Method and Experimental Conditions Structure Quality
8Q87 Structure of the G. gallus 80S rotated ribosome in complex with eEF2 and SERBP1 Deposited 2023-08-18 Different oligomeric state Different ligand/ion Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 80 PDB declaration: 85-meric
Chain Bi 1–105（105 aa）
Not recorded MG MAGNESIUM ION × 492 ZN ZINC ION × 8 GDP GUANOSINE-5'-DIPHOSPHATE × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 2.40 Å

1 other PDB entries and 1 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name RL36_CHICK
Isoform —
PDB entities 38
Chains and sequence ranges Author chain Bi； PDBConstruct 1–105； UniProt 1–105

Ribosomal protein L37

OrganismNot specified

UniProt E1C810

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein–RNA Heteromer Protein × 75 RNA 5 PDB declaration: 80-meric（80） Consistent with all polymer counts Chain Bj； UniProt 1–97 Not recorded 28S rRNA × 1 5.8S rRNA × 1 5S rRNA × 1 60S ribosomal protein L41 × 1 （A0A087WNH4） 60S ribosomal protein L8 × 1 （F1NIX0） Ribosomal protein uL3 × 1 （Q5ZJZ2） 60S ribosomal protein L4 C-terminal domain-containing protein × 1 （Q5ZII1） Large ribosomal subunit protein uL18 × 1 （P22451） 60S ribosomal protein L6 × 1 （Q8UWG7） Large ribosomal subunit protein uL30 × 1 （Q5ZJ56） Large ribosomal subunit protein eL8 × 1 （P32429） 60S ribosomal protein L9 × 1 （A0A1D5NVI1） Large ribosomal subunit protein uL16 × 1 （Q08200） 60S ribosomal protein L11 × 1 （A0A1D5P3B1） Large ribosomal subunit protein eL13 × 1 （P41125） 60S ribosomal protein L14 × 1 （Q98TF9） Ribosomal protein L15 × 1 （F1NQG5） Ribosomal protein uL13 × 1 60S ribosomal protein L17 × 1 （A0A1D5PR40） Ribosomal protein L18 × 1 Ribosomal protein L19 × 1 （Q5ZKK8） 60S ribosomal protein L18a × 1 60S ribosomal protein L21 × 1 （R4GIQ2） Large ribosomal subunit protein eL22 × 1 （Q98TF8） Large ribosomal subunit protein uL14 × 1 Ribosomal protein L24 × 1 （A0A8V0XRE7） Ribosomal protein uL23 × 1 Ribosomal protein L26 like 1 × 1 （F2Z4K6） Large ribosomal subunit protein eL27 × 1 （P61355） Ribosomal protein uL15 × 1 60S ribosomal protein L29 × 1 （A0A1L1RNZ2） Large ribosomal subunit protein eL30 × 1 （P67883） 60S ribosomal protein L31 × 1 （A0A1L1RT94） Ribosomal protein L32 × 1 （E1BVB1） 60S ribosomal protein L35a × 1 （A0A8V0YS49） 60S ribosomal protein L34 × 1 （A0A1L1S0X5） Large ribosomal subunit protein uL29 × 1 （Q98TF7） Large ribosomal subunit protein eL36 × 1 （Q98TF6） 60S ribosomal protein L38 × 1 （E1BU66） Large ribosomal subunit protein eL39 × 1 （Q98TF5） Ubiquitin-60S ribosomal protein L40 × 1 （O42388） Ribosomal protein L36a like × 1 （A0A8V0YUB1） Large ribosomal subunit protein eL43 × 1 （P32046） 60S ribosomal protein L28 × 1 （Q5F346） 18S rRNA × 1 Small ribosomal subunit protein eS1 × 1 40S ribosomal protein S27 × 1 （A0A3Q2TV39） 40S ribosomal protein S28 × 1 （A0A3Q2U825） 40S ribosomal protein S2 × 1 （A0A8V0Z891） Small ribosomal subunit protein eS4 × 1 （P47836） Ribosomal protein eS30 × 1 40S ribosomal protein S26 × 1 （Q5ZM66） Small ribosomal subunit protein eS6 × 1 （P47838） 40S ribosomal protein S7 × 1 （F1NN16） 40S ribosomal protein S8 × 1 （F1NB02） 40S ribosomal protein S9 × 1 （B7NZS8） 40S ribosomal protein S11 × 1 （Q98TH5） Small ribosomal subunit protein uS15 × 1 （Q6ITC7） Ribosomal protein S14 × 1 （Q5ZHW8） 40S ribosomal protein S20 × 1 （F1NH93） Small ribosomal subunit protein eS21 × 1 40S ribosomal protein S15a × 1 （A0A3Q3A7P6） Small ribosomal subunit protein uS12 × 1 40S ribosomal protein S24 × 1 （F1NF89） Small ribosomal subunit protein uS2 × 1 （P50890） Ribosomal protein S16 × 1 （R4GGJ0） Ubiquitin × 1 （P79781） Ribosomal protein S5 × 1 （G1TFM5） Small ribosomal subunit protein RACK1 × 1 （P63247） 40S ribosomal protein S29 × 1 （A0A8V0Z8V3） Ribosomal protein S10 × 1 （E1C4N0） Small ribosomal subunit protein eS12 × 1 （P84175） Small ribosomal subunit protein uS19 × 1 （P62846） 40S ribosomal protein S18 × 1 （G1TPG3） 40S ribosomal protein S19 × 1 40S ribosomal protein S25 × 1 （A0A8V1A7V4） DNA-(apurinic or apyrimidinic site) lyase × 1 （F1NPA9） Phe tRNA × 1 Small ribosomal subunit protein eS17 × 1 （P08636） MG MAGNESIUM ION × 494 ZN ZINC ION × 7 ELECTRON MICROSCOPY cryo-EM buffer：pH 7.5 cryo-EM vitrification conditions：Cryogen ETHANE Resolution 2.50 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

Other PDB Difference from Current Entry 8Q7Z Assembly / Oligomeric State Construct Mutations and Modifications Ligands, Ions and Non-polymers Method and Experimental Conditions Structure Quality
8Q87 Structure of the G. gallus 80S rotated ribosome in complex with eEF2 and SERBP1 Deposited 2023-08-18 Different oligomeric state Different ligand/ion Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 80 PDB declaration: 85-meric
Chain Bj 1–97（97 aa）
Not recorded MG MAGNESIUM ION × 492 ZN ZINC ION × 8 GDP GUANOSINE-5'-DIPHOSPHATE × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 2.40 Å

1 other PDB entries and 1 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name E1C810_CHICK
Isoform —
PDB entities 39
Chains and sequence ranges Author chain Bj； PDBConstruct 1–97； UniProt 1–97

60S ribosomal protein L38

OrganismNot specified

UniProt E1BU66

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein–RNA Heteromer Protein × 75 RNA 5 PDB declaration: 80-meric（80） Consistent with all polymer counts Chain Bk； UniProt 1–70 Not recorded 28S rRNA × 1 5.8S rRNA × 1 5S rRNA × 1 60S ribosomal protein L41 × 1 （A0A087WNH4） 60S ribosomal protein L8 × 1 （F1NIX0） Ribosomal protein uL3 × 1 （Q5ZJZ2） 60S ribosomal protein L4 C-terminal domain-containing protein × 1 （Q5ZII1） Large ribosomal subunit protein uL18 × 1 （P22451） 60S ribosomal protein L6 × 1 （Q8UWG7） Large ribosomal subunit protein uL30 × 1 （Q5ZJ56） Large ribosomal subunit protein eL8 × 1 （P32429） 60S ribosomal protein L9 × 1 （A0A1D5NVI1） Large ribosomal subunit protein uL16 × 1 （Q08200） 60S ribosomal protein L11 × 1 （A0A1D5P3B1） Large ribosomal subunit protein eL13 × 1 （P41125） 60S ribosomal protein L14 × 1 （Q98TF9） Ribosomal protein L15 × 1 （F1NQG5） Ribosomal protein uL13 × 1 60S ribosomal protein L17 × 1 （A0A1D5PR40） Ribosomal protein L18 × 1 Ribosomal protein L19 × 1 （Q5ZKK8） 60S ribosomal protein L18a × 1 60S ribosomal protein L21 × 1 （R4GIQ2） Large ribosomal subunit protein eL22 × 1 （Q98TF8） Large ribosomal subunit protein uL14 × 1 Ribosomal protein L24 × 1 （A0A8V0XRE7） Ribosomal protein uL23 × 1 Ribosomal protein L26 like 1 × 1 （F2Z4K6） Large ribosomal subunit protein eL27 × 1 （P61355） Ribosomal protein uL15 × 1 60S ribosomal protein L29 × 1 （A0A1L1RNZ2） Large ribosomal subunit protein eL30 × 1 （P67883） 60S ribosomal protein L31 × 1 （A0A1L1RT94） Ribosomal protein L32 × 1 （E1BVB1） 60S ribosomal protein L35a × 1 （A0A8V0YS49） 60S ribosomal protein L34 × 1 （A0A1L1S0X5） Large ribosomal subunit protein uL29 × 1 （Q98TF7） Large ribosomal subunit protein eL36 × 1 （Q98TF6） Ribosomal protein L37 × 1 （E1C810） Large ribosomal subunit protein eL39 × 1 （Q98TF5） Ubiquitin-60S ribosomal protein L40 × 1 （O42388） Ribosomal protein L36a like × 1 （A0A8V0YUB1） Large ribosomal subunit protein eL43 × 1 （P32046） 60S ribosomal protein L28 × 1 （Q5F346） 18S rRNA × 1 Small ribosomal subunit protein eS1 × 1 40S ribosomal protein S27 × 1 （A0A3Q2TV39） 40S ribosomal protein S28 × 1 （A0A3Q2U825） 40S ribosomal protein S2 × 1 （A0A8V0Z891） Small ribosomal subunit protein eS4 × 1 （P47836） Ribosomal protein eS30 × 1 40S ribosomal protein S26 × 1 （Q5ZM66） Small ribosomal subunit protein eS6 × 1 （P47838） 40S ribosomal protein S7 × 1 （F1NN16） 40S ribosomal protein S8 × 1 （F1NB02） 40S ribosomal protein S9 × 1 （B7NZS8） 40S ribosomal protein S11 × 1 （Q98TH5） Small ribosomal subunit protein uS15 × 1 （Q6ITC7） Ribosomal protein S14 × 1 （Q5ZHW8） 40S ribosomal protein S20 × 1 （F1NH93） Small ribosomal subunit protein eS21 × 1 40S ribosomal protein S15a × 1 （A0A3Q3A7P6） Small ribosomal subunit protein uS12 × 1 40S ribosomal protein S24 × 1 （F1NF89） Small ribosomal subunit protein uS2 × 1 （P50890） Ribosomal protein S16 × 1 （R4GGJ0） Ubiquitin × 1 （P79781） Ribosomal protein S5 × 1 （G1TFM5） Small ribosomal subunit protein RACK1 × 1 （P63247） 40S ribosomal protein S29 × 1 （A0A8V0Z8V3） Ribosomal protein S10 × 1 （E1C4N0） Small ribosomal subunit protein eS12 × 1 （P84175） Small ribosomal subunit protein uS19 × 1 （P62846） 40S ribosomal protein S18 × 1 （G1TPG3） 40S ribosomal protein S19 × 1 40S ribosomal protein S25 × 1 （A0A8V1A7V4） DNA-(apurinic or apyrimidinic site) lyase × 1 （F1NPA9） Phe tRNA × 1 Small ribosomal subunit protein eS17 × 1 （P08636） MG MAGNESIUM ION × 494 ZN ZINC ION × 7 ELECTRON MICROSCOPY cryo-EM buffer：pH 7.5 cryo-EM vitrification conditions：Cryogen ETHANE Resolution 2.50 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

Other PDB Difference from Current Entry 8Q7Z Assembly / Oligomeric State Construct Mutations and Modifications Ligands, Ions and Non-polymers Method and Experimental Conditions Structure Quality
8Q87 Structure of the G. gallus 80S rotated ribosome in complex with eEF2 and SERBP1 Deposited 2023-08-18 Different oligomeric state Different ligand/ion Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 80 PDB declaration: 85-meric
Chain Bk 1–70（70 aa）
Not recorded MG MAGNESIUM ION × 492 ZN ZINC ION × 8 GDP GUANOSINE-5'-DIPHOSPHATE × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 2.40 Å

1 other PDB entries and 1 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name E1BU66_CHICK
Isoform —
PDB entities 40
Chains and sequence ranges Author chain Bk； PDBConstruct 1–70； UniProt 1–70

Large ribosomal subunit protein eL39

OrganismNot specified

UniProt Q98TF5

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein–RNA Heteromer Protein × 75 RNA 5 PDB declaration: 80-meric（80） Consistent with all polymer counts Chain Bl； UniProt 1–51 Not recorded 28S rRNA × 1 5.8S rRNA × 1 5S rRNA × 1 60S ribosomal protein L41 × 1 （A0A087WNH4） 60S ribosomal protein L8 × 1 （F1NIX0） Ribosomal protein uL3 × 1 （Q5ZJZ2） 60S ribosomal protein L4 C-terminal domain-containing protein × 1 （Q5ZII1） Large ribosomal subunit protein uL18 × 1 （P22451） 60S ribosomal protein L6 × 1 （Q8UWG7） Large ribosomal subunit protein uL30 × 1 （Q5ZJ56） Large ribosomal subunit protein eL8 × 1 （P32429） 60S ribosomal protein L9 × 1 （A0A1D5NVI1） Large ribosomal subunit protein uL16 × 1 （Q08200） 60S ribosomal protein L11 × 1 （A0A1D5P3B1） Large ribosomal subunit protein eL13 × 1 （P41125） 60S ribosomal protein L14 × 1 （Q98TF9） Ribosomal protein L15 × 1 （F1NQG5） Ribosomal protein uL13 × 1 60S ribosomal protein L17 × 1 （A0A1D5PR40） Ribosomal protein L18 × 1 Ribosomal protein L19 × 1 （Q5ZKK8） 60S ribosomal protein L18a × 1 60S ribosomal protein L21 × 1 （R4GIQ2） Large ribosomal subunit protein eL22 × 1 （Q98TF8） Large ribosomal subunit protein uL14 × 1 Ribosomal protein L24 × 1 （A0A8V0XRE7） Ribosomal protein uL23 × 1 Ribosomal protein L26 like 1 × 1 （F2Z4K6） Large ribosomal subunit protein eL27 × 1 （P61355） Ribosomal protein uL15 × 1 60S ribosomal protein L29 × 1 （A0A1L1RNZ2） Large ribosomal subunit protein eL30 × 1 （P67883） 60S ribosomal protein L31 × 1 （A0A1L1RT94） Ribosomal protein L32 × 1 （E1BVB1） 60S ribosomal protein L35a × 1 （A0A8V0YS49） 60S ribosomal protein L34 × 1 （A0A1L1S0X5） Large ribosomal subunit protein uL29 × 1 （Q98TF7） Large ribosomal subunit protein eL36 × 1 （Q98TF6） Ribosomal protein L37 × 1 （E1C810） 60S ribosomal protein L38 × 1 （E1BU66） Ubiquitin-60S ribosomal protein L40 × 1 （O42388） Ribosomal protein L36a like × 1 （A0A8V0YUB1） Large ribosomal subunit protein eL43 × 1 （P32046） 60S ribosomal protein L28 × 1 （Q5F346） 18S rRNA × 1 Small ribosomal subunit protein eS1 × 1 40S ribosomal protein S27 × 1 （A0A3Q2TV39） 40S ribosomal protein S28 × 1 （A0A3Q2U825） 40S ribosomal protein S2 × 1 （A0A8V0Z891） Small ribosomal subunit protein eS4 × 1 （P47836） Ribosomal protein eS30 × 1 40S ribosomal protein S26 × 1 （Q5ZM66） Small ribosomal subunit protein eS6 × 1 （P47838） 40S ribosomal protein S7 × 1 （F1NN16） 40S ribosomal protein S8 × 1 （F1NB02） 40S ribosomal protein S9 × 1 （B7NZS8） 40S ribosomal protein S11 × 1 （Q98TH5） Small ribosomal subunit protein uS15 × 1 （Q6ITC7） Ribosomal protein S14 × 1 （Q5ZHW8） 40S ribosomal protein S20 × 1 （F1NH93） Small ribosomal subunit protein eS21 × 1 40S ribosomal protein S15a × 1 （A0A3Q3A7P6） Small ribosomal subunit protein uS12 × 1 40S ribosomal protein S24 × 1 （F1NF89） Small ribosomal subunit protein uS2 × 1 （P50890） Ribosomal protein S16 × 1 （R4GGJ0） Ubiquitin × 1 （P79781） Ribosomal protein S5 × 1 （G1TFM5） Small ribosomal subunit protein RACK1 × 1 （P63247） 40S ribosomal protein S29 × 1 （A0A8V0Z8V3） Ribosomal protein S10 × 1 （E1C4N0） Small ribosomal subunit protein eS12 × 1 （P84175） Small ribosomal subunit protein uS19 × 1 （P62846） 40S ribosomal protein S18 × 1 （G1TPG3） 40S ribosomal protein S19 × 1 40S ribosomal protein S25 × 1 （A0A8V1A7V4） DNA-(apurinic or apyrimidinic site) lyase × 1 （F1NPA9） Phe tRNA × 1 Small ribosomal subunit protein eS17 × 1 （P08636） MG MAGNESIUM ION × 494 ZN ZINC ION × 7 ELECTRON MICROSCOPY cryo-EM buffer：pH 7.5 cryo-EM vitrification conditions：Cryogen ETHANE Resolution 2.50 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

Other PDB Difference from Current Entry 8Q7Z Assembly / Oligomeric State Construct Mutations and Modifications Ligands, Ions and Non-polymers Method and Experimental Conditions Structure Quality
8Q87 Structure of the G. gallus 80S rotated ribosome in complex with eEF2 and SERBP1 Deposited 2023-08-18 Different oligomeric state Different ligand/ion Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 80 PDB declaration: 85-meric
Chain Bl 1–51（51 aa）
Not recorded MG MAGNESIUM ION × 492 ZN ZINC ION × 8 GDP GUANOSINE-5'-DIPHOSPHATE × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 2.40 Å

1 other PDB entries and 1 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name RL39_CHICK
Isoform —
PDB entities 41
Chains and sequence ranges Author chain Bl； PDBConstruct 1–51； UniProt 1–51

Ubiquitin-60S ribosomal protein L40

OrganismNot specified

UniProt O42388

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein–RNA Heteromer Protein × 75 RNA 5 PDB declaration: 80-meric（80） Consistent with all polymer counts Chain Bm； UniProt 1–128 Not recorded 28S rRNA × 1 5.8S rRNA × 1 5S rRNA × 1 60S ribosomal protein L41 × 1 （A0A087WNH4） 60S ribosomal protein L8 × 1 （F1NIX0） Ribosomal protein uL3 × 1 （Q5ZJZ2） 60S ribosomal protein L4 C-terminal domain-containing protein × 1 （Q5ZII1） Large ribosomal subunit protein uL18 × 1 （P22451） 60S ribosomal protein L6 × 1 （Q8UWG7） Large ribosomal subunit protein uL30 × 1 （Q5ZJ56） Large ribosomal subunit protein eL8 × 1 （P32429） 60S ribosomal protein L9 × 1 （A0A1D5NVI1） Large ribosomal subunit protein uL16 × 1 （Q08200） 60S ribosomal protein L11 × 1 （A0A1D5P3B1） Large ribosomal subunit protein eL13 × 1 （P41125） 60S ribosomal protein L14 × 1 （Q98TF9） Ribosomal protein L15 × 1 （F1NQG5） Ribosomal protein uL13 × 1 60S ribosomal protein L17 × 1 （A0A1D5PR40） Ribosomal protein L18 × 1 Ribosomal protein L19 × 1 （Q5ZKK8） 60S ribosomal protein L18a × 1 60S ribosomal protein L21 × 1 （R4GIQ2） Large ribosomal subunit protein eL22 × 1 （Q98TF8） Large ribosomal subunit protein uL14 × 1 Ribosomal protein L24 × 1 （A0A8V0XRE7） Ribosomal protein uL23 × 1 Ribosomal protein L26 like 1 × 1 （F2Z4K6） Large ribosomal subunit protein eL27 × 1 （P61355） Ribosomal protein uL15 × 1 60S ribosomal protein L29 × 1 （A0A1L1RNZ2） Large ribosomal subunit protein eL30 × 1 （P67883） 60S ribosomal protein L31 × 1 （A0A1L1RT94） Ribosomal protein L32 × 1 （E1BVB1） 60S ribosomal protein L35a × 1 （A0A8V0YS49） 60S ribosomal protein L34 × 1 （A0A1L1S0X5） Large ribosomal subunit protein uL29 × 1 （Q98TF7） Large ribosomal subunit protein eL36 × 1 （Q98TF6） Ribosomal protein L37 × 1 （E1C810） 60S ribosomal protein L38 × 1 （E1BU66） Large ribosomal subunit protein eL39 × 1 （Q98TF5） Ribosomal protein L36a like × 1 （A0A8V0YUB1） Large ribosomal subunit protein eL43 × 1 （P32046） 60S ribosomal protein L28 × 1 （Q5F346） 18S rRNA × 1 Small ribosomal subunit protein eS1 × 1 40S ribosomal protein S27 × 1 （A0A3Q2TV39） 40S ribosomal protein S28 × 1 （A0A3Q2U825） 40S ribosomal protein S2 × 1 （A0A8V0Z891） Small ribosomal subunit protein eS4 × 1 （P47836） Ribosomal protein eS30 × 1 40S ribosomal protein S26 × 1 （Q5ZM66） Small ribosomal subunit protein eS6 × 1 （P47838） 40S ribosomal protein S7 × 1 （F1NN16） 40S ribosomal protein S8 × 1 （F1NB02） 40S ribosomal protein S9 × 1 （B7NZS8） 40S ribosomal protein S11 × 1 （Q98TH5） Small ribosomal subunit protein uS15 × 1 （Q6ITC7） Ribosomal protein S14 × 1 （Q5ZHW8） 40S ribosomal protein S20 × 1 （F1NH93） Small ribosomal subunit protein eS21 × 1 40S ribosomal protein S15a × 1 （A0A3Q3A7P6） Small ribosomal subunit protein uS12 × 1 40S ribosomal protein S24 × 1 （F1NF89） Small ribosomal subunit protein uS2 × 1 （P50890） Ribosomal protein S16 × 1 （R4GGJ0） Ubiquitin × 1 （P79781） Ribosomal protein S5 × 1 （G1TFM5） Small ribosomal subunit protein RACK1 × 1 （P63247） 40S ribosomal protein S29 × 1 （A0A8V0Z8V3） Ribosomal protein S10 × 1 （E1C4N0） Small ribosomal subunit protein eS12 × 1 （P84175） Small ribosomal subunit protein uS19 × 1 （P62846） 40S ribosomal protein S18 × 1 （G1TPG3） 40S ribosomal protein S19 × 1 40S ribosomal protein S25 × 1 （A0A8V1A7V4） DNA-(apurinic or apyrimidinic site) lyase × 1 （F1NPA9） Phe tRNA × 1 Small ribosomal subunit protein eS17 × 1 （P08636） MG MAGNESIUM ION × 494 ZN ZINC ION × 7 ELECTRON MICROSCOPY cryo-EM buffer：pH 7.5 cryo-EM vitrification conditions：Cryogen ETHANE Resolution 2.50 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

Other PDB Difference from Current Entry 8Q7Z Assembly / Oligomeric State Construct Mutations and Modifications Ligands, Ions and Non-polymers Method and Experimental Conditions Structure Quality
8Q87 Structure of the G. gallus 80S rotated ribosome in complex with eEF2 and SERBP1 Deposited 2023-08-18 Different oligomeric state Different ligand/ion Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 80 PDB declaration: 85-meric
Chain Bm 1–128（128 aa）
Not recorded MG MAGNESIUM ION × 492 ZN ZINC ION × 8 GDP GUANOSINE-5'-DIPHOSPHATE × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 2.40 Å

1 other PDB entries and 1 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name O42388_CHICK
Isoform —
PDB entities 42
Chains and sequence ranges Author chain Bm； PDBConstruct 1–128； UniProt 1–128

Ribosomal protein L36a like

OrganismNot specified

UniProt A0A8V0YUB1

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein–RNA Heteromer Protein × 75 RNA 5 PDB declaration: 80-meric（80） Consistent with all polymer counts Chain Bo； UniProt 123–227 Non-standard monomer：Yes (specific site not provided by mmCIF) 28S rRNA × 1 5.8S rRNA × 1 5S rRNA × 1 60S ribosomal protein L41 × 1 （A0A087WNH4） 60S ribosomal protein L8 × 1 （F1NIX0） Ribosomal protein uL3 × 1 （Q5ZJZ2） 60S ribosomal protein L4 C-terminal domain-containing protein × 1 （Q5ZII1） Large ribosomal subunit protein uL18 × 1 （P22451） 60S ribosomal protein L6 × 1 （Q8UWG7） Large ribosomal subunit protein uL30 × 1 （Q5ZJ56） Large ribosomal subunit protein eL8 × 1 （P32429） 60S ribosomal protein L9 × 1 （A0A1D5NVI1） Large ribosomal subunit protein uL16 × 1 （Q08200） 60S ribosomal protein L11 × 1 （A0A1D5P3B1） Large ribosomal subunit protein eL13 × 1 （P41125） 60S ribosomal protein L14 × 1 （Q98TF9） Ribosomal protein L15 × 1 （F1NQG5） Ribosomal protein uL13 × 1 60S ribosomal protein L17 × 1 （A0A1D5PR40） Ribosomal protein L18 × 1 Ribosomal protein L19 × 1 （Q5ZKK8） 60S ribosomal protein L18a × 1 60S ribosomal protein L21 × 1 （R4GIQ2） Large ribosomal subunit protein eL22 × 1 （Q98TF8） Large ribosomal subunit protein uL14 × 1 Ribosomal protein L24 × 1 （A0A8V0XRE7） Ribosomal protein uL23 × 1 Ribosomal protein L26 like 1 × 1 （F2Z4K6） Large ribosomal subunit protein eL27 × 1 （P61355） Ribosomal protein uL15 × 1 60S ribosomal protein L29 × 1 （A0A1L1RNZ2） Large ribosomal subunit protein eL30 × 1 （P67883） 60S ribosomal protein L31 × 1 （A0A1L1RT94） Ribosomal protein L32 × 1 （E1BVB1） 60S ribosomal protein L35a × 1 （A0A8V0YS49） 60S ribosomal protein L34 × 1 （A0A1L1S0X5） Large ribosomal subunit protein uL29 × 1 （Q98TF7） Large ribosomal subunit protein eL36 × 1 （Q98TF6） Ribosomal protein L37 × 1 （E1C810） 60S ribosomal protein L38 × 1 （E1BU66） Large ribosomal subunit protein eL39 × 1 （Q98TF5） Ubiquitin-60S ribosomal protein L40 × 1 （O42388） Large ribosomal subunit protein eL43 × 1 （P32046） 60S ribosomal protein L28 × 1 （Q5F346） 18S rRNA × 1 Small ribosomal subunit protein eS1 × 1 40S ribosomal protein S27 × 1 （A0A3Q2TV39） 40S ribosomal protein S28 × 1 （A0A3Q2U825） 40S ribosomal protein S2 × 1 （A0A8V0Z891） Small ribosomal subunit protein eS4 × 1 （P47836） Ribosomal protein eS30 × 1 40S ribosomal protein S26 × 1 （Q5ZM66） Small ribosomal subunit protein eS6 × 1 （P47838） 40S ribosomal protein S7 × 1 （F1NN16） 40S ribosomal protein S8 × 1 （F1NB02） 40S ribosomal protein S9 × 1 （B7NZS8） 40S ribosomal protein S11 × 1 （Q98TH5） Small ribosomal subunit protein uS15 × 1 （Q6ITC7） Ribosomal protein S14 × 1 （Q5ZHW8） 40S ribosomal protein S20 × 1 （F1NH93） Small ribosomal subunit protein eS21 × 1 40S ribosomal protein S15a × 1 （A0A3Q3A7P6） Small ribosomal subunit protein uS12 × 1 40S ribosomal protein S24 × 1 （F1NF89） Small ribosomal subunit protein uS2 × 1 （P50890） Ribosomal protein S16 × 1 （R4GGJ0） Ubiquitin × 1 （P79781） Ribosomal protein S5 × 1 （G1TFM5） Small ribosomal subunit protein RACK1 × 1 （P63247） 40S ribosomal protein S29 × 1 （A0A8V0Z8V3） Ribosomal protein S10 × 1 （E1C4N0） Small ribosomal subunit protein eS12 × 1 （P84175） Small ribosomal subunit protein uS19 × 1 （P62846） 40S ribosomal protein S18 × 1 （G1TPG3） 40S ribosomal protein S19 × 1 40S ribosomal protein S25 × 1 （A0A8V1A7V4） DNA-(apurinic or apyrimidinic site) lyase × 1 （F1NPA9） Phe tRNA × 1 Small ribosomal subunit protein eS17 × 1 （P08636） MG MAGNESIUM ION × 494 ZN ZINC ION × 7 ELECTRON MICROSCOPY cryo-EM buffer：pH 7.5 cryo-EM vitrification conditions：Cryogen ETHANE Resolution 2.50 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

Other PDB Difference from Current Entry 8Q7Z Assembly / Oligomeric State Construct Mutations and Modifications Ligands, Ions and Non-polymers Method and Experimental Conditions Structure Quality
8Q87 Structure of the G. gallus 80S rotated ribosome in complex with eEF2 and SERBP1 Deposited 2023-08-18 Different oligomeric state Different ligand/ion Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 80 PDB declaration: 85-meric
Chain Bo 123–227（105 aa）
Non-standard monomer：Yes (specific site not provided by mmCIF) MG MAGNESIUM ION × 492 ZN ZINC ION × 8 GDP GUANOSINE-5'-DIPHOSPHATE × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 2.40 Å

1 other PDB entries and 1 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name A0A8V0YUB1_CHICK
Isoform —
PDB entities 43
Chains and sequence ranges Author chain Bo； PDBConstruct 1–105； UniProt 123–227

Large ribosomal subunit protein eL43

OrganismNot specified

UniProt P32046

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein–RNA Heteromer Protein × 75 RNA 5 PDB declaration: 80-meric（80） Consistent with all polymer counts Chain Bp； UniProt 1–92 Not recorded 28S rRNA × 1 5.8S rRNA × 1 5S rRNA × 1 60S ribosomal protein L41 × 1 （A0A087WNH4） 60S ribosomal protein L8 × 1 （F1NIX0） Ribosomal protein uL3 × 1 （Q5ZJZ2） 60S ribosomal protein L4 C-terminal domain-containing protein × 1 （Q5ZII1） Large ribosomal subunit protein uL18 × 1 （P22451） 60S ribosomal protein L6 × 1 （Q8UWG7） Large ribosomal subunit protein uL30 × 1 （Q5ZJ56） Large ribosomal subunit protein eL8 × 1 （P32429） 60S ribosomal protein L9 × 1 （A0A1D5NVI1） Large ribosomal subunit protein uL16 × 1 （Q08200） 60S ribosomal protein L11 × 1 （A0A1D5P3B1） Large ribosomal subunit protein eL13 × 1 （P41125） 60S ribosomal protein L14 × 1 （Q98TF9） Ribosomal protein L15 × 1 （F1NQG5） Ribosomal protein uL13 × 1 60S ribosomal protein L17 × 1 （A0A1D5PR40） Ribosomal protein L18 × 1 Ribosomal protein L19 × 1 （Q5ZKK8） 60S ribosomal protein L18a × 1 60S ribosomal protein L21 × 1 （R4GIQ2） Large ribosomal subunit protein eL22 × 1 （Q98TF8） Large ribosomal subunit protein uL14 × 1 Ribosomal protein L24 × 1 （A0A8V0XRE7） Ribosomal protein uL23 × 1 Ribosomal protein L26 like 1 × 1 （F2Z4K6） Large ribosomal subunit protein eL27 × 1 （P61355） Ribosomal protein uL15 × 1 60S ribosomal protein L29 × 1 （A0A1L1RNZ2） Large ribosomal subunit protein eL30 × 1 （P67883） 60S ribosomal protein L31 × 1 （A0A1L1RT94） Ribosomal protein L32 × 1 （E1BVB1） 60S ribosomal protein L35a × 1 （A0A8V0YS49） 60S ribosomal protein L34 × 1 （A0A1L1S0X5） Large ribosomal subunit protein uL29 × 1 （Q98TF7） Large ribosomal subunit protein eL36 × 1 （Q98TF6） Ribosomal protein L37 × 1 （E1C810） 60S ribosomal protein L38 × 1 （E1BU66） Large ribosomal subunit protein eL39 × 1 （Q98TF5） Ubiquitin-60S ribosomal protein L40 × 1 （O42388） Ribosomal protein L36a like × 1 （A0A8V0YUB1） 60S ribosomal protein L28 × 1 （Q5F346） 18S rRNA × 1 Small ribosomal subunit protein eS1 × 1 40S ribosomal protein S27 × 1 （A0A3Q2TV39） 40S ribosomal protein S28 × 1 （A0A3Q2U825） 40S ribosomal protein S2 × 1 （A0A8V0Z891） Small ribosomal subunit protein eS4 × 1 （P47836） Ribosomal protein eS30 × 1 40S ribosomal protein S26 × 1 （Q5ZM66） Small ribosomal subunit protein eS6 × 1 （P47838） 40S ribosomal protein S7 × 1 （F1NN16） 40S ribosomal protein S8 × 1 （F1NB02） 40S ribosomal protein S9 × 1 （B7NZS8） 40S ribosomal protein S11 × 1 （Q98TH5） Small ribosomal subunit protein uS15 × 1 （Q6ITC7） Ribosomal protein S14 × 1 （Q5ZHW8） 40S ribosomal protein S20 × 1 （F1NH93） Small ribosomal subunit protein eS21 × 1 40S ribosomal protein S15a × 1 （A0A3Q3A7P6） Small ribosomal subunit protein uS12 × 1 40S ribosomal protein S24 × 1 （F1NF89） Small ribosomal subunit protein uS2 × 1 （P50890） Ribosomal protein S16 × 1 （R4GGJ0） Ubiquitin × 1 （P79781） Ribosomal protein S5 × 1 （G1TFM5） Small ribosomal subunit protein RACK1 × 1 （P63247） 40S ribosomal protein S29 × 1 （A0A8V0Z8V3） Ribosomal protein S10 × 1 （E1C4N0） Small ribosomal subunit protein eS12 × 1 （P84175） Small ribosomal subunit protein uS19 × 1 （P62846） 40S ribosomal protein S18 × 1 （G1TPG3） 40S ribosomal protein S19 × 1 40S ribosomal protein S25 × 1 （A0A8V1A7V4） DNA-(apurinic or apyrimidinic site) lyase × 1 （F1NPA9） Phe tRNA × 1 Small ribosomal subunit protein eS17 × 1 （P08636） MG MAGNESIUM ION × 494 ZN ZINC ION × 7 ELECTRON MICROSCOPY cryo-EM buffer：pH 7.5 cryo-EM vitrification conditions：Cryogen ETHANE Resolution 2.50 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

Other PDB Difference from Current Entry 8Q7Z Assembly / Oligomeric State Construct Mutations and Modifications Ligands, Ions and Non-polymers Method and Experimental Conditions Structure Quality
8Q87 Structure of the G. gallus 80S rotated ribosome in complex with eEF2 and SERBP1 Deposited 2023-08-18 Different oligomeric state Different ligand/ion Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 80 PDB declaration: 85-meric
Chain Bp 1–92（92 aa）
Not recorded MG MAGNESIUM ION × 492 ZN ZINC ION × 8 GDP GUANOSINE-5'-DIPHOSPHATE × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 2.40 Å

1 other PDB entries and 1 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name RL37A_CHICK
Isoform —
PDB entities 44
Chains and sequence ranges Author chain Bp； PDBConstruct 1–92； UniProt 1–92

60S ribosomal protein L28

OrganismNot specified

UniProt Q5F346

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein–RNA Heteromer Protein × 75 RNA 5 PDB declaration: 80-meric（80） Consistent with all polymer counts Chain Br； UniProt 1–138 Not recorded 28S rRNA × 1 5.8S rRNA × 1 5S rRNA × 1 60S ribosomal protein L41 × 1 （A0A087WNH4） 60S ribosomal protein L8 × 1 （F1NIX0） Ribosomal protein uL3 × 1 （Q5ZJZ2） 60S ribosomal protein L4 C-terminal domain-containing protein × 1 （Q5ZII1） Large ribosomal subunit protein uL18 × 1 （P22451） 60S ribosomal protein L6 × 1 （Q8UWG7） Large ribosomal subunit protein uL30 × 1 （Q5ZJ56） Large ribosomal subunit protein eL8 × 1 （P32429） 60S ribosomal protein L9 × 1 （A0A1D5NVI1） Large ribosomal subunit protein uL16 × 1 （Q08200） 60S ribosomal protein L11 × 1 （A0A1D5P3B1） Large ribosomal subunit protein eL13 × 1 （P41125） 60S ribosomal protein L14 × 1 （Q98TF9） Ribosomal protein L15 × 1 （F1NQG5） Ribosomal protein uL13 × 1 60S ribosomal protein L17 × 1 （A0A1D5PR40） Ribosomal protein L18 × 1 Ribosomal protein L19 × 1 （Q5ZKK8） 60S ribosomal protein L18a × 1 60S ribosomal protein L21 × 1 （R4GIQ2） Large ribosomal subunit protein eL22 × 1 （Q98TF8） Large ribosomal subunit protein uL14 × 1 Ribosomal protein L24 × 1 （A0A8V0XRE7） Ribosomal protein uL23 × 1 Ribosomal protein L26 like 1 × 1 （F2Z4K6） Large ribosomal subunit protein eL27 × 1 （P61355） Ribosomal protein uL15 × 1 60S ribosomal protein L29 × 1 （A0A1L1RNZ2） Large ribosomal subunit protein eL30 × 1 （P67883） 60S ribosomal protein L31 × 1 （A0A1L1RT94） Ribosomal protein L32 × 1 （E1BVB1） 60S ribosomal protein L35a × 1 （A0A8V0YS49） 60S ribosomal protein L34 × 1 （A0A1L1S0X5） Large ribosomal subunit protein uL29 × 1 （Q98TF7） Large ribosomal subunit protein eL36 × 1 （Q98TF6） Ribosomal protein L37 × 1 （E1C810） 60S ribosomal protein L38 × 1 （E1BU66） Large ribosomal subunit protein eL39 × 1 （Q98TF5） Ubiquitin-60S ribosomal protein L40 × 1 （O42388） Ribosomal protein L36a like × 1 （A0A8V0YUB1） Large ribosomal subunit protein eL43 × 1 （P32046） 18S rRNA × 1 Small ribosomal subunit protein eS1 × 1 40S ribosomal protein S27 × 1 （A0A3Q2TV39） 40S ribosomal protein S28 × 1 （A0A3Q2U825） 40S ribosomal protein S2 × 1 （A0A8V0Z891） Small ribosomal subunit protein eS4 × 1 （P47836） Ribosomal protein eS30 × 1 40S ribosomal protein S26 × 1 （Q5ZM66） Small ribosomal subunit protein eS6 × 1 （P47838） 40S ribosomal protein S7 × 1 （F1NN16） 40S ribosomal protein S8 × 1 （F1NB02） 40S ribosomal protein S9 × 1 （B7NZS8） 40S ribosomal protein S11 × 1 （Q98TH5） Small ribosomal subunit protein uS15 × 1 （Q6ITC7） Ribosomal protein S14 × 1 （Q5ZHW8） 40S ribosomal protein S20 × 1 （F1NH93） Small ribosomal subunit protein eS21 × 1 40S ribosomal protein S15a × 1 （A0A3Q3A7P6） Small ribosomal subunit protein uS12 × 1 40S ribosomal protein S24 × 1 （F1NF89） Small ribosomal subunit protein uS2 × 1 （P50890） Ribosomal protein S16 × 1 （R4GGJ0） Ubiquitin × 1 （P79781） Ribosomal protein S5 × 1 （G1TFM5） Small ribosomal subunit protein RACK1 × 1 （P63247） 40S ribosomal protein S29 × 1 （A0A8V0Z8V3） Ribosomal protein S10 × 1 （E1C4N0） Small ribosomal subunit protein eS12 × 1 （P84175） Small ribosomal subunit protein uS19 × 1 （P62846） 40S ribosomal protein S18 × 1 （G1TPG3） 40S ribosomal protein S19 × 1 40S ribosomal protein S25 × 1 （A0A8V1A7V4） DNA-(apurinic or apyrimidinic site) lyase × 1 （F1NPA9） Phe tRNA × 1 Small ribosomal subunit protein eS17 × 1 （P08636） MG MAGNESIUM ION × 494 ZN ZINC ION × 7 ELECTRON MICROSCOPY cryo-EM buffer：pH 7.5 cryo-EM vitrification conditions：Cryogen ETHANE Resolution 2.50 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

Other PDB Difference from Current Entry 8Q7Z Assembly / Oligomeric State Construct Mutations and Modifications Ligands, Ions and Non-polymers Method and Experimental Conditions Structure Quality
8Q87 Structure of the G. gallus 80S rotated ribosome in complex with eEF2 and SERBP1 Deposited 2023-08-18 Different oligomeric state Different ligand/ion Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 80 PDB declaration: 85-meric
Chain Br 1–138（138 aa）
Not recorded MG MAGNESIUM ION × 492 ZN ZINC ION × 8 GDP GUANOSINE-5'-DIPHOSPHATE × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 2.40 Å

1 other PDB entries and 1 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name Q5F346_CHICK
Isoform —
PDB entities 45
Chains and sequence ranges Author chain Br； PDBConstruct 1–138； UniProt 1–138

40S ribosomal protein S27

OrganismNot specified

UniProt A0A3Q2TV39

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein–RNA Heteromer Protein × 75 RNA 5 PDB declaration: 80-meric（80） Consistent with all polymer counts Chain AA； UniProt 1–84 Not recorded 28S rRNA × 1 5.8S rRNA × 1 5S rRNA × 1 60S ribosomal protein L41 × 1 （A0A087WNH4） 60S ribosomal protein L8 × 1 （F1NIX0） Ribosomal protein uL3 × 1 （Q5ZJZ2） 60S ribosomal protein L4 C-terminal domain-containing protein × 1 （Q5ZII1） Large ribosomal subunit protein uL18 × 1 （P22451） 60S ribosomal protein L6 × 1 （Q8UWG7） Large ribosomal subunit protein uL30 × 1 （Q5ZJ56） Large ribosomal subunit protein eL8 × 1 （P32429） 60S ribosomal protein L9 × 1 （A0A1D5NVI1） Large ribosomal subunit protein uL16 × 1 （Q08200） 60S ribosomal protein L11 × 1 （A0A1D5P3B1） Large ribosomal subunit protein eL13 × 1 （P41125） 60S ribosomal protein L14 × 1 （Q98TF9） Ribosomal protein L15 × 1 （F1NQG5） Ribosomal protein uL13 × 1 60S ribosomal protein L17 × 1 （A0A1D5PR40） Ribosomal protein L18 × 1 Ribosomal protein L19 × 1 （Q5ZKK8） 60S ribosomal protein L18a × 1 60S ribosomal protein L21 × 1 （R4GIQ2） Large ribosomal subunit protein eL22 × 1 （Q98TF8） Large ribosomal subunit protein uL14 × 1 Ribosomal protein L24 × 1 （A0A8V0XRE7） Ribosomal protein uL23 × 1 Ribosomal protein L26 like 1 × 1 （F2Z4K6） Large ribosomal subunit protein eL27 × 1 （P61355） Ribosomal protein uL15 × 1 60S ribosomal protein L29 × 1 （A0A1L1RNZ2） Large ribosomal subunit protein eL30 × 1 （P67883） 60S ribosomal protein L31 × 1 （A0A1L1RT94） Ribosomal protein L32 × 1 （E1BVB1） 60S ribosomal protein L35a × 1 （A0A8V0YS49） 60S ribosomal protein L34 × 1 （A0A1L1S0X5） Large ribosomal subunit protein uL29 × 1 （Q98TF7） Large ribosomal subunit protein eL36 × 1 （Q98TF6） Ribosomal protein L37 × 1 （E1C810） 60S ribosomal protein L38 × 1 （E1BU66） Large ribosomal subunit protein eL39 × 1 （Q98TF5） Ubiquitin-60S ribosomal protein L40 × 1 （O42388） Ribosomal protein L36a like × 1 （A0A8V0YUB1） Large ribosomal subunit protein eL43 × 1 （P32046） 60S ribosomal protein L28 × 1 （Q5F346） 18S rRNA × 1 Small ribosomal subunit protein eS1 × 1 40S ribosomal protein S28 × 1 （A0A3Q2U825） 40S ribosomal protein S2 × 1 （A0A8V0Z891） Small ribosomal subunit protein eS4 × 1 （P47836） Ribosomal protein eS30 × 1 40S ribosomal protein S26 × 1 （Q5ZM66） Small ribosomal subunit protein eS6 × 1 （P47838） 40S ribosomal protein S7 × 1 （F1NN16） 40S ribosomal protein S8 × 1 （F1NB02） 40S ribosomal protein S9 × 1 （B7NZS8） 40S ribosomal protein S11 × 1 （Q98TH5） Small ribosomal subunit protein uS15 × 1 （Q6ITC7） Ribosomal protein S14 × 1 （Q5ZHW8） 40S ribosomal protein S20 × 1 （F1NH93） Small ribosomal subunit protein eS21 × 1 40S ribosomal protein S15a × 1 （A0A3Q3A7P6） Small ribosomal subunit protein uS12 × 1 40S ribosomal protein S24 × 1 （F1NF89） Small ribosomal subunit protein uS2 × 1 （P50890） Ribosomal protein S16 × 1 （R4GGJ0） Ubiquitin × 1 （P79781） Ribosomal protein S5 × 1 （G1TFM5） Small ribosomal subunit protein RACK1 × 1 （P63247） 40S ribosomal protein S29 × 1 （A0A8V0Z8V3） Ribosomal protein S10 × 1 （E1C4N0） Small ribosomal subunit protein eS12 × 1 （P84175） Small ribosomal subunit protein uS19 × 1 （P62846） 40S ribosomal protein S18 × 1 （G1TPG3） 40S ribosomal protein S19 × 1 40S ribosomal protein S25 × 1 （A0A8V1A7V4） DNA-(apurinic or apyrimidinic site) lyase × 1 （F1NPA9） Phe tRNA × 1 Small ribosomal subunit protein eS17 × 1 （P08636） MG MAGNESIUM ION × 494 ZN ZINC ION × 7 ELECTRON MICROSCOPY cryo-EM buffer：pH 7.5 cryo-EM vitrification conditions：Cryogen ETHANE Resolution 2.50 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

Other PDB Difference from Current Entry 8Q7Z Assembly / Oligomeric State Construct Mutations and Modifications Ligands, Ions and Non-polymers Method and Experimental Conditions Structure Quality
8Q87 Structure of the G. gallus 80S rotated ribosome in complex with eEF2 and SERBP1 Deposited 2023-08-18 Different oligomeric state Different ligand/ion Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 80 PDB declaration: 85-meric
Chain AA 1–84（84 aa）
Not recorded MG MAGNESIUM ION × 492 ZN ZINC ION × 8 GDP GUANOSINE-5'-DIPHOSPHATE × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 2.40 Å

1 other PDB entries and 1 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name A0A3Q2TV39_CHICK
Isoform —
PDB entities 48
Chains and sequence ranges Author chain AA； PDBConstruct 1–84； UniProt 1–84

40S ribosomal protein S28

OrganismNot specified

UniProt A0A3Q2U825

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein–RNA Heteromer Protein × 75 RNA 5 PDB declaration: 80-meric（80） Consistent with all polymer counts Chain AB； UniProt 1–69 Not recorded 28S rRNA × 1 5.8S rRNA × 1 5S rRNA × 1 60S ribosomal protein L41 × 1 （A0A087WNH4） 60S ribosomal protein L8 × 1 （F1NIX0） Ribosomal protein uL3 × 1 （Q5ZJZ2） 60S ribosomal protein L4 C-terminal domain-containing protein × 1 （Q5ZII1） Large ribosomal subunit protein uL18 × 1 （P22451） 60S ribosomal protein L6 × 1 （Q8UWG7） Large ribosomal subunit protein uL30 × 1 （Q5ZJ56） Large ribosomal subunit protein eL8 × 1 （P32429） 60S ribosomal protein L9 × 1 （A0A1D5NVI1） Large ribosomal subunit protein uL16 × 1 （Q08200） 60S ribosomal protein L11 × 1 （A0A1D5P3B1） Large ribosomal subunit protein eL13 × 1 （P41125） 60S ribosomal protein L14 × 1 （Q98TF9） Ribosomal protein L15 × 1 （F1NQG5） Ribosomal protein uL13 × 1 60S ribosomal protein L17 × 1 （A0A1D5PR40） Ribosomal protein L18 × 1 Ribosomal protein L19 × 1 （Q5ZKK8） 60S ribosomal protein L18a × 1 60S ribosomal protein L21 × 1 （R4GIQ2） Large ribosomal subunit protein eL22 × 1 （Q98TF8） Large ribosomal subunit protein uL14 × 1 Ribosomal protein L24 × 1 （A0A8V0XRE7） Ribosomal protein uL23 × 1 Ribosomal protein L26 like 1 × 1 （F2Z4K6） Large ribosomal subunit protein eL27 × 1 （P61355） Ribosomal protein uL15 × 1 60S ribosomal protein L29 × 1 （A0A1L1RNZ2） Large ribosomal subunit protein eL30 × 1 （P67883） 60S ribosomal protein L31 × 1 （A0A1L1RT94） Ribosomal protein L32 × 1 （E1BVB1） 60S ribosomal protein L35a × 1 （A0A8V0YS49） 60S ribosomal protein L34 × 1 （A0A1L1S0X5） Large ribosomal subunit protein uL29 × 1 （Q98TF7） Large ribosomal subunit protein eL36 × 1 （Q98TF6） Ribosomal protein L37 × 1 （E1C810） 60S ribosomal protein L38 × 1 （E1BU66） Large ribosomal subunit protein eL39 × 1 （Q98TF5） Ubiquitin-60S ribosomal protein L40 × 1 （O42388） Ribosomal protein L36a like × 1 （A0A8V0YUB1） Large ribosomal subunit protein eL43 × 1 （P32046） 60S ribosomal protein L28 × 1 （Q5F346） 18S rRNA × 1 Small ribosomal subunit protein eS1 × 1 40S ribosomal protein S27 × 1 （A0A3Q2TV39） 40S ribosomal protein S2 × 1 （A0A8V0Z891） Small ribosomal subunit protein eS4 × 1 （P47836） Ribosomal protein eS30 × 1 40S ribosomal protein S26 × 1 （Q5ZM66） Small ribosomal subunit protein eS6 × 1 （P47838） 40S ribosomal protein S7 × 1 （F1NN16） 40S ribosomal protein S8 × 1 （F1NB02） 40S ribosomal protein S9 × 1 （B7NZS8） 40S ribosomal protein S11 × 1 （Q98TH5） Small ribosomal subunit protein uS15 × 1 （Q6ITC7） Ribosomal protein S14 × 1 （Q5ZHW8） 40S ribosomal protein S20 × 1 （F1NH93） Small ribosomal subunit protein eS21 × 1 40S ribosomal protein S15a × 1 （A0A3Q3A7P6） Small ribosomal subunit protein uS12 × 1 40S ribosomal protein S24 × 1 （F1NF89） Small ribosomal subunit protein uS2 × 1 （P50890） Ribosomal protein S16 × 1 （R4GGJ0） Ubiquitin × 1 （P79781） Ribosomal protein S5 × 1 （G1TFM5） Small ribosomal subunit protein RACK1 × 1 （P63247） 40S ribosomal protein S29 × 1 （A0A8V0Z8V3） Ribosomal protein S10 × 1 （E1C4N0） Small ribosomal subunit protein eS12 × 1 （P84175） Small ribosomal subunit protein uS19 × 1 （P62846） 40S ribosomal protein S18 × 1 （G1TPG3） 40S ribosomal protein S19 × 1 40S ribosomal protein S25 × 1 （A0A8V1A7V4） DNA-(apurinic or apyrimidinic site) lyase × 1 （F1NPA9） Phe tRNA × 1 Small ribosomal subunit protein eS17 × 1 （P08636） MG MAGNESIUM ION × 494 ZN ZINC ION × 7 ELECTRON MICROSCOPY cryo-EM buffer：pH 7.5 cryo-EM vitrification conditions：Cryogen ETHANE Resolution 2.50 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

Other PDB Difference from Current Entry 8Q7Z Assembly / Oligomeric State Construct Mutations and Modifications Ligands, Ions and Non-polymers Method and Experimental Conditions Structure Quality
8Q87 Structure of the G. gallus 80S rotated ribosome in complex with eEF2 and SERBP1 Deposited 2023-08-18 Different oligomeric state Different ligand/ion Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 80 PDB declaration: 85-meric
Chain AB 1–69（69 aa）
Not recorded MG MAGNESIUM ION × 492 ZN ZINC ION × 8 GDP GUANOSINE-5'-DIPHOSPHATE × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 2.40 Å

1 other PDB entries and 1 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name A0A3Q2U825_CHICK
Isoform —
PDB entities 49
Chains and sequence ranges Author chain AB； PDBConstruct 1–69； UniProt 1–69

40S ribosomal protein S2

OrganismNot specified

UniProt A0A8V0Z891

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein–RNA Heteromer Protein × 75 RNA 5 PDB declaration: 80-meric（80） Consistent with all polymer counts Chain Ab； UniProt 1–264 Not recorded 28S rRNA × 1 5.8S rRNA × 1 5S rRNA × 1 60S ribosomal protein L41 × 1 （A0A087WNH4） 60S ribosomal protein L8 × 1 （F1NIX0） Ribosomal protein uL3 × 1 （Q5ZJZ2） 60S ribosomal protein L4 C-terminal domain-containing protein × 1 （Q5ZII1） Large ribosomal subunit protein uL18 × 1 （P22451） 60S ribosomal protein L6 × 1 （Q8UWG7） Large ribosomal subunit protein uL30 × 1 （Q5ZJ56） Large ribosomal subunit protein eL8 × 1 （P32429） 60S ribosomal protein L9 × 1 （A0A1D5NVI1） Large ribosomal subunit protein uL16 × 1 （Q08200） 60S ribosomal protein L11 × 1 （A0A1D5P3B1） Large ribosomal subunit protein eL13 × 1 （P41125） 60S ribosomal protein L14 × 1 （Q98TF9） Ribosomal protein L15 × 1 （F1NQG5） Ribosomal protein uL13 × 1 60S ribosomal protein L17 × 1 （A0A1D5PR40） Ribosomal protein L18 × 1 Ribosomal protein L19 × 1 （Q5ZKK8） 60S ribosomal protein L18a × 1 60S ribosomal protein L21 × 1 （R4GIQ2） Large ribosomal subunit protein eL22 × 1 （Q98TF8） Large ribosomal subunit protein uL14 × 1 Ribosomal protein L24 × 1 （A0A8V0XRE7） Ribosomal protein uL23 × 1 Ribosomal protein L26 like 1 × 1 （F2Z4K6） Large ribosomal subunit protein eL27 × 1 （P61355） Ribosomal protein uL15 × 1 60S ribosomal protein L29 × 1 （A0A1L1RNZ2） Large ribosomal subunit protein eL30 × 1 （P67883） 60S ribosomal protein L31 × 1 （A0A1L1RT94） Ribosomal protein L32 × 1 （E1BVB1） 60S ribosomal protein L35a × 1 （A0A8V0YS49） 60S ribosomal protein L34 × 1 （A0A1L1S0X5） Large ribosomal subunit protein uL29 × 1 （Q98TF7） Large ribosomal subunit protein eL36 × 1 （Q98TF6） Ribosomal protein L37 × 1 （E1C810） 60S ribosomal protein L38 × 1 （E1BU66） Large ribosomal subunit protein eL39 × 1 （Q98TF5） Ubiquitin-60S ribosomal protein L40 × 1 （O42388） Ribosomal protein L36a like × 1 （A0A8V0YUB1） Large ribosomal subunit protein eL43 × 1 （P32046） 60S ribosomal protein L28 × 1 （Q5F346） 18S rRNA × 1 Small ribosomal subunit protein eS1 × 1 40S ribosomal protein S27 × 1 （A0A3Q2TV39） 40S ribosomal protein S28 × 1 （A0A3Q2U825） Small ribosomal subunit protein eS4 × 1 （P47836） Ribosomal protein eS30 × 1 40S ribosomal protein S26 × 1 （Q5ZM66） Small ribosomal subunit protein eS6 × 1 （P47838） 40S ribosomal protein S7 × 1 （F1NN16） 40S ribosomal protein S8 × 1 （F1NB02） 40S ribosomal protein S9 × 1 （B7NZS8） 40S ribosomal protein S11 × 1 （Q98TH5） Small ribosomal subunit protein uS15 × 1 （Q6ITC7） Ribosomal protein S14 × 1 （Q5ZHW8） 40S ribosomal protein S20 × 1 （F1NH93） Small ribosomal subunit protein eS21 × 1 40S ribosomal protein S15a × 1 （A0A3Q3A7P6） Small ribosomal subunit protein uS12 × 1 40S ribosomal protein S24 × 1 （F1NF89） Small ribosomal subunit protein uS2 × 1 （P50890） Ribosomal protein S16 × 1 （R4GGJ0） Ubiquitin × 1 （P79781） Ribosomal protein S5 × 1 （G1TFM5） Small ribosomal subunit protein RACK1 × 1 （P63247） 40S ribosomal protein S29 × 1 （A0A8V0Z8V3） Ribosomal protein S10 × 1 （E1C4N0） Small ribosomal subunit protein eS12 × 1 （P84175） Small ribosomal subunit protein uS19 × 1 （P62846） 40S ribosomal protein S18 × 1 （G1TPG3） 40S ribosomal protein S19 × 1 40S ribosomal protein S25 × 1 （A0A8V1A7V4） DNA-(apurinic or apyrimidinic site) lyase × 1 （F1NPA9） Phe tRNA × 1 Small ribosomal subunit protein eS17 × 1 （P08636） MG MAGNESIUM ION × 494 ZN ZINC ION × 7 ELECTRON MICROSCOPY cryo-EM buffer：pH 7.5 cryo-EM vitrification conditions：Cryogen ETHANE Resolution 2.50 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

Other PDB Difference from Current Entry 8Q7Z Assembly / Oligomeric State Construct Mutations and Modifications Ligands, Ions and Non-polymers Method and Experimental Conditions Structure Quality
8Q87 Structure of the G. gallus 80S rotated ribosome in complex with eEF2 and SERBP1 Deposited 2023-08-18 Different oligomeric state Different ligand/ion Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 80 PDB declaration: 85-meric
Chain Ab 1–264（264 aa）
Not recorded MG MAGNESIUM ION × 492 ZN ZINC ION × 8 GDP GUANOSINE-5'-DIPHOSPHATE × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 2.40 Å

1 other PDB entries and 1 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name A0A8V0Z891_CHICK
Isoform —
PDB entities 50
Chains and sequence ranges Author chain Ab； PDBConstruct 1–264； UniProt 1–264

Small ribosomal subunit protein eS4

OrganismNot specified

UniProt P47836

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein–RNA Heteromer Protein × 75 RNA 5 PDB declaration: 80-meric（80） Consistent with all polymer counts Chain Ad； UniProt 1–263 Not recorded 28S rRNA × 1 5.8S rRNA × 1 5S rRNA × 1 60S ribosomal protein L41 × 1 （A0A087WNH4） 60S ribosomal protein L8 × 1 （F1NIX0） Ribosomal protein uL3 × 1 （Q5ZJZ2） 60S ribosomal protein L4 C-terminal domain-containing protein × 1 （Q5ZII1） Large ribosomal subunit protein uL18 × 1 （P22451） 60S ribosomal protein L6 × 1 （Q8UWG7） Large ribosomal subunit protein uL30 × 1 （Q5ZJ56） Large ribosomal subunit protein eL8 × 1 （P32429） 60S ribosomal protein L9 × 1 （A0A1D5NVI1） Large ribosomal subunit protein uL16 × 1 （Q08200） 60S ribosomal protein L11 × 1 （A0A1D5P3B1） Large ribosomal subunit protein eL13 × 1 （P41125） 60S ribosomal protein L14 × 1 （Q98TF9） Ribosomal protein L15 × 1 （F1NQG5） Ribosomal protein uL13 × 1 60S ribosomal protein L17 × 1 （A0A1D5PR40） Ribosomal protein L18 × 1 Ribosomal protein L19 × 1 （Q5ZKK8） 60S ribosomal protein L18a × 1 60S ribosomal protein L21 × 1 （R4GIQ2） Large ribosomal subunit protein eL22 × 1 （Q98TF8） Large ribosomal subunit protein uL14 × 1 Ribosomal protein L24 × 1 （A0A8V0XRE7） Ribosomal protein uL23 × 1 Ribosomal protein L26 like 1 × 1 （F2Z4K6） Large ribosomal subunit protein eL27 × 1 （P61355） Ribosomal protein uL15 × 1 60S ribosomal protein L29 × 1 （A0A1L1RNZ2） Large ribosomal subunit protein eL30 × 1 （P67883） 60S ribosomal protein L31 × 1 （A0A1L1RT94） Ribosomal protein L32 × 1 （E1BVB1） 60S ribosomal protein L35a × 1 （A0A8V0YS49） 60S ribosomal protein L34 × 1 （A0A1L1S0X5） Large ribosomal subunit protein uL29 × 1 （Q98TF7） Large ribosomal subunit protein eL36 × 1 （Q98TF6） Ribosomal protein L37 × 1 （E1C810） 60S ribosomal protein L38 × 1 （E1BU66） Large ribosomal subunit protein eL39 × 1 （Q98TF5） Ubiquitin-60S ribosomal protein L40 × 1 （O42388） Ribosomal protein L36a like × 1 （A0A8V0YUB1） Large ribosomal subunit protein eL43 × 1 （P32046） 60S ribosomal protein L28 × 1 （Q5F346） 18S rRNA × 1 Small ribosomal subunit protein eS1 × 1 40S ribosomal protein S27 × 1 （A0A3Q2TV39） 40S ribosomal protein S28 × 1 （A0A3Q2U825） 40S ribosomal protein S2 × 1 （A0A8V0Z891） Ribosomal protein eS30 × 1 40S ribosomal protein S26 × 1 （Q5ZM66） Small ribosomal subunit protein eS6 × 1 （P47838） 40S ribosomal protein S7 × 1 （F1NN16） 40S ribosomal protein S8 × 1 （F1NB02） 40S ribosomal protein S9 × 1 （B7NZS8） 40S ribosomal protein S11 × 1 （Q98TH5） Small ribosomal subunit protein uS15 × 1 （Q6ITC7） Ribosomal protein S14 × 1 （Q5ZHW8） 40S ribosomal protein S20 × 1 （F1NH93） Small ribosomal subunit protein eS21 × 1 40S ribosomal protein S15a × 1 （A0A3Q3A7P6） Small ribosomal subunit protein uS12 × 1 40S ribosomal protein S24 × 1 （F1NF89） Small ribosomal subunit protein uS2 × 1 （P50890） Ribosomal protein S16 × 1 （R4GGJ0） Ubiquitin × 1 （P79781） Ribosomal protein S5 × 1 （G1TFM5） Small ribosomal subunit protein RACK1 × 1 （P63247） 40S ribosomal protein S29 × 1 （A0A8V0Z8V3） Ribosomal protein S10 × 1 （E1C4N0） Small ribosomal subunit protein eS12 × 1 （P84175） Small ribosomal subunit protein uS19 × 1 （P62846） 40S ribosomal protein S18 × 1 （G1TPG3） 40S ribosomal protein S19 × 1 40S ribosomal protein S25 × 1 （A0A8V1A7V4） DNA-(apurinic or apyrimidinic site) lyase × 1 （F1NPA9） Phe tRNA × 1 Small ribosomal subunit protein eS17 × 1 （P08636） MG MAGNESIUM ION × 494 ZN ZINC ION × 7 ELECTRON MICROSCOPY cryo-EM buffer：pH 7.5 cryo-EM vitrification conditions：Cryogen ETHANE Resolution 2.50 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

Other PDB Difference from Current Entry 8Q7Z Assembly / Oligomeric State Construct Mutations and Modifications Ligands, Ions and Non-polymers Method and Experimental Conditions Structure Quality
8Q87 Structure of the G. gallus 80S rotated ribosome in complex with eEF2 and SERBP1 Deposited 2023-08-18 Different oligomeric state Different ligand/ion Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 80 PDB declaration: 85-meric
Chain Ad 1–263（263 aa）
Not recorded MG MAGNESIUM ION × 492 ZN ZINC ION × 8 GDP GUANOSINE-5'-DIPHOSPHATE × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 2.40 Å

1 other PDB entries and 1 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name RS4_CHICK
Isoform —
PDB entities 51
Chains and sequence ranges Author chain Ad； PDBConstruct 1–263； UniProt 1–263

40S ribosomal protein S26

OrganismNot specified

UniProt Q5ZM66

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein–RNA Heteromer Protein × 75 RNA 5 PDB declaration: 80-meric（80） Consistent with all polymer counts Chain AE； UniProt 1–115 Not recorded 28S rRNA × 1 5.8S rRNA × 1 5S rRNA × 1 60S ribosomal protein L41 × 1 （A0A087WNH4） 60S ribosomal protein L8 × 1 （F1NIX0） Ribosomal protein uL3 × 1 （Q5ZJZ2） 60S ribosomal protein L4 C-terminal domain-containing protein × 1 （Q5ZII1） Large ribosomal subunit protein uL18 × 1 （P22451） 60S ribosomal protein L6 × 1 （Q8UWG7） Large ribosomal subunit protein uL30 × 1 （Q5ZJ56） Large ribosomal subunit protein eL8 × 1 （P32429） 60S ribosomal protein L9 × 1 （A0A1D5NVI1） Large ribosomal subunit protein uL16 × 1 （Q08200） 60S ribosomal protein L11 × 1 （A0A1D5P3B1） Large ribosomal subunit protein eL13 × 1 （P41125） 60S ribosomal protein L14 × 1 （Q98TF9） Ribosomal protein L15 × 1 （F1NQG5） Ribosomal protein uL13 × 1 60S ribosomal protein L17 × 1 （A0A1D5PR40） Ribosomal protein L18 × 1 Ribosomal protein L19 × 1 （Q5ZKK8） 60S ribosomal protein L18a × 1 60S ribosomal protein L21 × 1 （R4GIQ2） Large ribosomal subunit protein eL22 × 1 （Q98TF8） Large ribosomal subunit protein uL14 × 1 Ribosomal protein L24 × 1 （A0A8V0XRE7） Ribosomal protein uL23 × 1 Ribosomal protein L26 like 1 × 1 （F2Z4K6） Large ribosomal subunit protein eL27 × 1 （P61355） Ribosomal protein uL15 × 1 60S ribosomal protein L29 × 1 （A0A1L1RNZ2） Large ribosomal subunit protein eL30 × 1 （P67883） 60S ribosomal protein L31 × 1 （A0A1L1RT94） Ribosomal protein L32 × 1 （E1BVB1） 60S ribosomal protein L35a × 1 （A0A8V0YS49） 60S ribosomal protein L34 × 1 （A0A1L1S0X5） Large ribosomal subunit protein uL29 × 1 （Q98TF7） Large ribosomal subunit protein eL36 × 1 （Q98TF6） Ribosomal protein L37 × 1 （E1C810） 60S ribosomal protein L38 × 1 （E1BU66） Large ribosomal subunit protein eL39 × 1 （Q98TF5） Ubiquitin-60S ribosomal protein L40 × 1 （O42388） Ribosomal protein L36a like × 1 （A0A8V0YUB1） Large ribosomal subunit protein eL43 × 1 （P32046） 60S ribosomal protein L28 × 1 （Q5F346） 18S rRNA × 1 Small ribosomal subunit protein eS1 × 1 40S ribosomal protein S27 × 1 （A0A3Q2TV39） 40S ribosomal protein S28 × 1 （A0A3Q2U825） 40S ribosomal protein S2 × 1 （A0A8V0Z891） Small ribosomal subunit protein eS4 × 1 （P47836） Ribosomal protein eS30 × 1 Small ribosomal subunit protein eS6 × 1 （P47838） 40S ribosomal protein S7 × 1 （F1NN16） 40S ribosomal protein S8 × 1 （F1NB02） 40S ribosomal protein S9 × 1 （B7NZS8） 40S ribosomal protein S11 × 1 （Q98TH5） Small ribosomal subunit protein uS15 × 1 （Q6ITC7） Ribosomal protein S14 × 1 （Q5ZHW8） 40S ribosomal protein S20 × 1 （F1NH93） Small ribosomal subunit protein eS21 × 1 40S ribosomal protein S15a × 1 （A0A3Q3A7P6） Small ribosomal subunit protein uS12 × 1 40S ribosomal protein S24 × 1 （F1NF89） Small ribosomal subunit protein uS2 × 1 （P50890） Ribosomal protein S16 × 1 （R4GGJ0） Ubiquitin × 1 （P79781） Ribosomal protein S5 × 1 （G1TFM5） Small ribosomal subunit protein RACK1 × 1 （P63247） 40S ribosomal protein S29 × 1 （A0A8V0Z8V3） Ribosomal protein S10 × 1 （E1C4N0） Small ribosomal subunit protein eS12 × 1 （P84175） Small ribosomal subunit protein uS19 × 1 （P62846） 40S ribosomal protein S18 × 1 （G1TPG3） 40S ribosomal protein S19 × 1 40S ribosomal protein S25 × 1 （A0A8V1A7V4） DNA-(apurinic or apyrimidinic site) lyase × 1 （F1NPA9） Phe tRNA × 1 Small ribosomal subunit protein eS17 × 1 （P08636） MG MAGNESIUM ION × 494 ZN ZINC ION × 7 ELECTRON MICROSCOPY cryo-EM buffer：pH 7.5 cryo-EM vitrification conditions：Cryogen ETHANE Resolution 2.50 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

Other PDB Difference from Current Entry 8Q7Z Assembly / Oligomeric State Construct Mutations and Modifications Ligands, Ions and Non-polymers Method and Experimental Conditions Structure Quality
8Q87 Structure of the G. gallus 80S rotated ribosome in complex with eEF2 and SERBP1 Deposited 2023-08-18 Different oligomeric state Different ligand/ion Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 80 PDB declaration: 85-meric
Chain AE 1–115（115 aa）
Not recorded MG MAGNESIUM ION × 492 ZN ZINC ION × 8 GDP GUANOSINE-5'-DIPHOSPHATE × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 2.40 Å

1 other PDB entries and 1 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name Q5ZM66_CHICK
Isoform —
PDB entities 53
Chains and sequence ranges Author chain AE； PDBConstruct 1–115； UniProt 1–115

Small ribosomal subunit protein eS6

OrganismNot specified

UniProt P47838

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein–RNA Heteromer Protein × 75 RNA 5 PDB declaration: 80-meric（80） Consistent with all polymer counts Chain Af； UniProt 1–249 Not recorded 28S rRNA × 1 5.8S rRNA × 1 5S rRNA × 1 60S ribosomal protein L41 × 1 （A0A087WNH4） 60S ribosomal protein L8 × 1 （F1NIX0） Ribosomal protein uL3 × 1 （Q5ZJZ2） 60S ribosomal protein L4 C-terminal domain-containing protein × 1 （Q5ZII1） Large ribosomal subunit protein uL18 × 1 （P22451） 60S ribosomal protein L6 × 1 （Q8UWG7） Large ribosomal subunit protein uL30 × 1 （Q5ZJ56） Large ribosomal subunit protein eL8 × 1 （P32429） 60S ribosomal protein L9 × 1 （A0A1D5NVI1） Large ribosomal subunit protein uL16 × 1 （Q08200） 60S ribosomal protein L11 × 1 （A0A1D5P3B1） Large ribosomal subunit protein eL13 × 1 （P41125） 60S ribosomal protein L14 × 1 （Q98TF9） Ribosomal protein L15 × 1 （F1NQG5） Ribosomal protein uL13 × 1 60S ribosomal protein L17 × 1 （A0A1D5PR40） Ribosomal protein L18 × 1 Ribosomal protein L19 × 1 （Q5ZKK8） 60S ribosomal protein L18a × 1 60S ribosomal protein L21 × 1 （R4GIQ2） Large ribosomal subunit protein eL22 × 1 （Q98TF8） Large ribosomal subunit protein uL14 × 1 Ribosomal protein L24 × 1 （A0A8V0XRE7） Ribosomal protein uL23 × 1 Ribosomal protein L26 like 1 × 1 （F2Z4K6） Large ribosomal subunit protein eL27 × 1 （P61355） Ribosomal protein uL15 × 1 60S ribosomal protein L29 × 1 （A0A1L1RNZ2） Large ribosomal subunit protein eL30 × 1 （P67883） 60S ribosomal protein L31 × 1 （A0A1L1RT94） Ribosomal protein L32 × 1 （E1BVB1） 60S ribosomal protein L35a × 1 （A0A8V0YS49） 60S ribosomal protein L34 × 1 （A0A1L1S0X5） Large ribosomal subunit protein uL29 × 1 （Q98TF7） Large ribosomal subunit protein eL36 × 1 （Q98TF6） Ribosomal protein L37 × 1 （E1C810） 60S ribosomal protein L38 × 1 （E1BU66） Large ribosomal subunit protein eL39 × 1 （Q98TF5） Ubiquitin-60S ribosomal protein L40 × 1 （O42388） Ribosomal protein L36a like × 1 （A0A8V0YUB1） Large ribosomal subunit protein eL43 × 1 （P32046） 60S ribosomal protein L28 × 1 （Q5F346） 18S rRNA × 1 Small ribosomal subunit protein eS1 × 1 40S ribosomal protein S27 × 1 （A0A3Q2TV39） 40S ribosomal protein S28 × 1 （A0A3Q2U825） 40S ribosomal protein S2 × 1 （A0A8V0Z891） Small ribosomal subunit protein eS4 × 1 （P47836） Ribosomal protein eS30 × 1 40S ribosomal protein S26 × 1 （Q5ZM66） 40S ribosomal protein S7 × 1 （F1NN16） 40S ribosomal protein S8 × 1 （F1NB02） 40S ribosomal protein S9 × 1 （B7NZS8） 40S ribosomal protein S11 × 1 （Q98TH5） Small ribosomal subunit protein uS15 × 1 （Q6ITC7） Ribosomal protein S14 × 1 （Q5ZHW8） 40S ribosomal protein S20 × 1 （F1NH93） Small ribosomal subunit protein eS21 × 1 40S ribosomal protein S15a × 1 （A0A3Q3A7P6） Small ribosomal subunit protein uS12 × 1 40S ribosomal protein S24 × 1 （F1NF89） Small ribosomal subunit protein uS2 × 1 （P50890） Ribosomal protein S16 × 1 （R4GGJ0） Ubiquitin × 1 （P79781） Ribosomal protein S5 × 1 （G1TFM5） Small ribosomal subunit protein RACK1 × 1 （P63247） 40S ribosomal protein S29 × 1 （A0A8V0Z8V3） Ribosomal protein S10 × 1 （E1C4N0） Small ribosomal subunit protein eS12 × 1 （P84175） Small ribosomal subunit protein uS19 × 1 （P62846） 40S ribosomal protein S18 × 1 （G1TPG3） 40S ribosomal protein S19 × 1 40S ribosomal protein S25 × 1 （A0A8V1A7V4） DNA-(apurinic or apyrimidinic site) lyase × 1 （F1NPA9） Phe tRNA × 1 Small ribosomal subunit protein eS17 × 1 （P08636） MG MAGNESIUM ION × 494 ZN ZINC ION × 7 ELECTRON MICROSCOPY cryo-EM buffer：pH 7.5 cryo-EM vitrification conditions：Cryogen ETHANE Resolution 2.50 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

Other PDB Difference from Current Entry 8Q7Z Assembly / Oligomeric State Construct Mutations and Modifications Ligands, Ions and Non-polymers Method and Experimental Conditions Structure Quality
8Q87 Structure of the G. gallus 80S rotated ribosome in complex with eEF2 and SERBP1 Deposited 2023-08-18 Different oligomeric state Different ligand/ion Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 80 PDB declaration: 85-meric
Chain Af 1–249（249 aa）
Not recorded MG MAGNESIUM ION × 492 ZN ZINC ION × 8 GDP GUANOSINE-5'-DIPHOSPHATE × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 2.40 Å

1 other PDB entries and 1 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name RS6_CHICK
Isoform —
PDB entities 54
Chains and sequence ranges Author chain Af； PDBConstruct 1–249； UniProt 1–249

40S ribosomal protein S7

OrganismNot specified

UniProt F1NN16

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein–RNA Heteromer Protein × 75 RNA 5 PDB declaration: 80-meric（80） Consistent with all polymer counts Chain Ag； UniProt 1–194 Not recorded 28S rRNA × 1 5.8S rRNA × 1 5S rRNA × 1 60S ribosomal protein L41 × 1 （A0A087WNH4） 60S ribosomal protein L8 × 1 （F1NIX0） Ribosomal protein uL3 × 1 （Q5ZJZ2） 60S ribosomal protein L4 C-terminal domain-containing protein × 1 （Q5ZII1） Large ribosomal subunit protein uL18 × 1 （P22451） 60S ribosomal protein L6 × 1 （Q8UWG7） Large ribosomal subunit protein uL30 × 1 （Q5ZJ56） Large ribosomal subunit protein eL8 × 1 （P32429） 60S ribosomal protein L9 × 1 （A0A1D5NVI1） Large ribosomal subunit protein uL16 × 1 （Q08200） 60S ribosomal protein L11 × 1 （A0A1D5P3B1） Large ribosomal subunit protein eL13 × 1 （P41125） 60S ribosomal protein L14 × 1 （Q98TF9） Ribosomal protein L15 × 1 （F1NQG5） Ribosomal protein uL13 × 1 60S ribosomal protein L17 × 1 （A0A1D5PR40） Ribosomal protein L18 × 1 Ribosomal protein L19 × 1 （Q5ZKK8） 60S ribosomal protein L18a × 1 60S ribosomal protein L21 × 1 （R4GIQ2） Large ribosomal subunit protein eL22 × 1 （Q98TF8） Large ribosomal subunit protein uL14 × 1 Ribosomal protein L24 × 1 （A0A8V0XRE7） Ribosomal protein uL23 × 1 Ribosomal protein L26 like 1 × 1 （F2Z4K6） Large ribosomal subunit protein eL27 × 1 （P61355） Ribosomal protein uL15 × 1 60S ribosomal protein L29 × 1 （A0A1L1RNZ2） Large ribosomal subunit protein eL30 × 1 （P67883） 60S ribosomal protein L31 × 1 （A0A1L1RT94） Ribosomal protein L32 × 1 （E1BVB1） 60S ribosomal protein L35a × 1 （A0A8V0YS49） 60S ribosomal protein L34 × 1 （A0A1L1S0X5） Large ribosomal subunit protein uL29 × 1 （Q98TF7） Large ribosomal subunit protein eL36 × 1 （Q98TF6） Ribosomal protein L37 × 1 （E1C810） 60S ribosomal protein L38 × 1 （E1BU66） Large ribosomal subunit protein eL39 × 1 （Q98TF5） Ubiquitin-60S ribosomal protein L40 × 1 （O42388） Ribosomal protein L36a like × 1 （A0A8V0YUB1） Large ribosomal subunit protein eL43 × 1 （P32046） 60S ribosomal protein L28 × 1 （Q5F346） 18S rRNA × 1 Small ribosomal subunit protein eS1 × 1 40S ribosomal protein S27 × 1 （A0A3Q2TV39） 40S ribosomal protein S28 × 1 （A0A3Q2U825） 40S ribosomal protein S2 × 1 （A0A8V0Z891） Small ribosomal subunit protein eS4 × 1 （P47836） Ribosomal protein eS30 × 1 40S ribosomal protein S26 × 1 （Q5ZM66） Small ribosomal subunit protein eS6 × 1 （P47838） 40S ribosomal protein S8 × 1 （F1NB02） 40S ribosomal protein S9 × 1 （B7NZS8） 40S ribosomal protein S11 × 1 （Q98TH5） Small ribosomal subunit protein uS15 × 1 （Q6ITC7） Ribosomal protein S14 × 1 （Q5ZHW8） 40S ribosomal protein S20 × 1 （F1NH93） Small ribosomal subunit protein eS21 × 1 40S ribosomal protein S15a × 1 （A0A3Q3A7P6） Small ribosomal subunit protein uS12 × 1 40S ribosomal protein S24 × 1 （F1NF89） Small ribosomal subunit protein uS2 × 1 （P50890） Ribosomal protein S16 × 1 （R4GGJ0） Ubiquitin × 1 （P79781） Ribosomal protein S5 × 1 （G1TFM5） Small ribosomal subunit protein RACK1 × 1 （P63247） 40S ribosomal protein S29 × 1 （A0A8V0Z8V3） Ribosomal protein S10 × 1 （E1C4N0） Small ribosomal subunit protein eS12 × 1 （P84175） Small ribosomal subunit protein uS19 × 1 （P62846） 40S ribosomal protein S18 × 1 （G1TPG3） 40S ribosomal protein S19 × 1 40S ribosomal protein S25 × 1 （A0A8V1A7V4） DNA-(apurinic or apyrimidinic site) lyase × 1 （F1NPA9） Phe tRNA × 1 Small ribosomal subunit protein eS17 × 1 （P08636） MG MAGNESIUM ION × 494 ZN ZINC ION × 7 ELECTRON MICROSCOPY cryo-EM buffer：pH 7.5 cryo-EM vitrification conditions：Cryogen ETHANE Resolution 2.50 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

Other PDB Difference from Current Entry 8Q7Z Assembly / Oligomeric State Construct Mutations and Modifications Ligands, Ions and Non-polymers Method and Experimental Conditions Structure Quality
8Q87 Structure of the G. gallus 80S rotated ribosome in complex with eEF2 and SERBP1 Deposited 2023-08-18 Different oligomeric state Different ligand/ion Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 80 PDB declaration: 85-meric
Chain Ag 1–194（194 aa）
Not recorded MG MAGNESIUM ION × 492 ZN ZINC ION × 8 GDP GUANOSINE-5'-DIPHOSPHATE × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 2.40 Å

1 other PDB entries and 1 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name F1NN16_CHICK
Isoform —
PDB entities 55
Chains and sequence ranges Author chain Ag； PDBConstruct 1–194； UniProt 1–194

40S ribosomal protein S8

OrganismNot specified

UniProt F1NB02

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein–RNA Heteromer Protein × 75 RNA 5 PDB declaration: 80-meric（80） Consistent with all polymer counts Chain Ah； UniProt 1–207 Not recorded 28S rRNA × 1 5.8S rRNA × 1 5S rRNA × 1 60S ribosomal protein L41 × 1 （A0A087WNH4） 60S ribosomal protein L8 × 1 （F1NIX0） Ribosomal protein uL3 × 1 （Q5ZJZ2） 60S ribosomal protein L4 C-terminal domain-containing protein × 1 （Q5ZII1） Large ribosomal subunit protein uL18 × 1 （P22451） 60S ribosomal protein L6 × 1 （Q8UWG7） Large ribosomal subunit protein uL30 × 1 （Q5ZJ56） Large ribosomal subunit protein eL8 × 1 （P32429） 60S ribosomal protein L9 × 1 （A0A1D5NVI1） Large ribosomal subunit protein uL16 × 1 （Q08200） 60S ribosomal protein L11 × 1 （A0A1D5P3B1） Large ribosomal subunit protein eL13 × 1 （P41125） 60S ribosomal protein L14 × 1 （Q98TF9） Ribosomal protein L15 × 1 （F1NQG5） Ribosomal protein uL13 × 1 60S ribosomal protein L17 × 1 （A0A1D5PR40） Ribosomal protein L18 × 1 Ribosomal protein L19 × 1 （Q5ZKK8） 60S ribosomal protein L18a × 1 60S ribosomal protein L21 × 1 （R4GIQ2） Large ribosomal subunit protein eL22 × 1 （Q98TF8） Large ribosomal subunit protein uL14 × 1 Ribosomal protein L24 × 1 （A0A8V0XRE7） Ribosomal protein uL23 × 1 Ribosomal protein L26 like 1 × 1 （F2Z4K6） Large ribosomal subunit protein eL27 × 1 （P61355） Ribosomal protein uL15 × 1 60S ribosomal protein L29 × 1 （A0A1L1RNZ2） Large ribosomal subunit protein eL30 × 1 （P67883） 60S ribosomal protein L31 × 1 （A0A1L1RT94） Ribosomal protein L32 × 1 （E1BVB1） 60S ribosomal protein L35a × 1 （A0A8V0YS49） 60S ribosomal protein L34 × 1 （A0A1L1S0X5） Large ribosomal subunit protein uL29 × 1 （Q98TF7） Large ribosomal subunit protein eL36 × 1 （Q98TF6） Ribosomal protein L37 × 1 （E1C810） 60S ribosomal protein L38 × 1 （E1BU66） Large ribosomal subunit protein eL39 × 1 （Q98TF5） Ubiquitin-60S ribosomal protein L40 × 1 （O42388） Ribosomal protein L36a like × 1 （A0A8V0YUB1） Large ribosomal subunit protein eL43 × 1 （P32046） 60S ribosomal protein L28 × 1 （Q5F346） 18S rRNA × 1 Small ribosomal subunit protein eS1 × 1 40S ribosomal protein S27 × 1 （A0A3Q2TV39） 40S ribosomal protein S28 × 1 （A0A3Q2U825） 40S ribosomal protein S2 × 1 （A0A8V0Z891） Small ribosomal subunit protein eS4 × 1 （P47836） Ribosomal protein eS30 × 1 40S ribosomal protein S26 × 1 （Q5ZM66） Small ribosomal subunit protein eS6 × 1 （P47838） 40S ribosomal protein S7 × 1 （F1NN16） 40S ribosomal protein S9 × 1 （B7NZS8） 40S ribosomal protein S11 × 1 （Q98TH5） Small ribosomal subunit protein uS15 × 1 （Q6ITC7） Ribosomal protein S14 × 1 （Q5ZHW8） 40S ribosomal protein S20 × 1 （F1NH93） Small ribosomal subunit protein eS21 × 1 40S ribosomal protein S15a × 1 （A0A3Q3A7P6） Small ribosomal subunit protein uS12 × 1 40S ribosomal protein S24 × 1 （F1NF89） Small ribosomal subunit protein uS2 × 1 （P50890） Ribosomal protein S16 × 1 （R4GGJ0） Ubiquitin × 1 （P79781） Ribosomal protein S5 × 1 （G1TFM5） Small ribosomal subunit protein RACK1 × 1 （P63247） 40S ribosomal protein S29 × 1 （A0A8V0Z8V3） Ribosomal protein S10 × 1 （E1C4N0） Small ribosomal subunit protein eS12 × 1 （P84175） Small ribosomal subunit protein uS19 × 1 （P62846） 40S ribosomal protein S18 × 1 （G1TPG3） 40S ribosomal protein S19 × 1 40S ribosomal protein S25 × 1 （A0A8V1A7V4） DNA-(apurinic or apyrimidinic site) lyase × 1 （F1NPA9） Phe tRNA × 1 Small ribosomal subunit protein eS17 × 1 （P08636） MG MAGNESIUM ION × 494 ZN ZINC ION × 7 ELECTRON MICROSCOPY cryo-EM buffer：pH 7.5 cryo-EM vitrification conditions：Cryogen ETHANE Resolution 2.50 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

Other PDB Difference from Current Entry 8Q7Z Assembly / Oligomeric State Construct Mutations and Modifications Ligands, Ions and Non-polymers Method and Experimental Conditions Structure Quality
8Q87 Structure of the G. gallus 80S rotated ribosome in complex with eEF2 and SERBP1 Deposited 2023-08-18 Different oligomeric state Different ligand/ion Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 80 PDB declaration: 85-meric
Chain Ah 1–207（207 aa）
Not recorded MG MAGNESIUM ION × 492 ZN ZINC ION × 8 GDP GUANOSINE-5'-DIPHOSPHATE × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 2.40 Å

1 other PDB entries and 1 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name F1NB02_CHICK
Isoform —
PDB entities 56
Chains and sequence ranges Author chain Ah； PDBConstruct 1–207； UniProt 1–207

40S ribosomal protein S9

OrganismNot specified

UniProt B7NZS8

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein–RNA Heteromer Protein × 75 RNA 5 PDB declaration: 80-meric（80） Consistent with all polymer counts Chain Ai； UniProt 1–194 Not recorded 28S rRNA × 1 5.8S rRNA × 1 5S rRNA × 1 60S ribosomal protein L41 × 1 （A0A087WNH4） 60S ribosomal protein L8 × 1 （F1NIX0） Ribosomal protein uL3 × 1 （Q5ZJZ2） 60S ribosomal protein L4 C-terminal domain-containing protein × 1 （Q5ZII1） Large ribosomal subunit protein uL18 × 1 （P22451） 60S ribosomal protein L6 × 1 （Q8UWG7） Large ribosomal subunit protein uL30 × 1 （Q5ZJ56） Large ribosomal subunit protein eL8 × 1 （P32429） 60S ribosomal protein L9 × 1 （A0A1D5NVI1） Large ribosomal subunit protein uL16 × 1 （Q08200） 60S ribosomal protein L11 × 1 （A0A1D5P3B1） Large ribosomal subunit protein eL13 × 1 （P41125） 60S ribosomal protein L14 × 1 （Q98TF9） Ribosomal protein L15 × 1 （F1NQG5） Ribosomal protein uL13 × 1 60S ribosomal protein L17 × 1 （A0A1D5PR40） Ribosomal protein L18 × 1 Ribosomal protein L19 × 1 （Q5ZKK8） 60S ribosomal protein L18a × 1 60S ribosomal protein L21 × 1 （R4GIQ2） Large ribosomal subunit protein eL22 × 1 （Q98TF8） Large ribosomal subunit protein uL14 × 1 Ribosomal protein L24 × 1 （A0A8V0XRE7） Ribosomal protein uL23 × 1 Ribosomal protein L26 like 1 × 1 （F2Z4K6） Large ribosomal subunit protein eL27 × 1 （P61355） Ribosomal protein uL15 × 1 60S ribosomal protein L29 × 1 （A0A1L1RNZ2） Large ribosomal subunit protein eL30 × 1 （P67883） 60S ribosomal protein L31 × 1 （A0A1L1RT94） Ribosomal protein L32 × 1 （E1BVB1） 60S ribosomal protein L35a × 1 （A0A8V0YS49） 60S ribosomal protein L34 × 1 （A0A1L1S0X5） Large ribosomal subunit protein uL29 × 1 （Q98TF7） Large ribosomal subunit protein eL36 × 1 （Q98TF6） Ribosomal protein L37 × 1 （E1C810） 60S ribosomal protein L38 × 1 （E1BU66） Large ribosomal subunit protein eL39 × 1 （Q98TF5） Ubiquitin-60S ribosomal protein L40 × 1 （O42388） Ribosomal protein L36a like × 1 （A0A8V0YUB1） Large ribosomal subunit protein eL43 × 1 （P32046） 60S ribosomal protein L28 × 1 （Q5F346） 18S rRNA × 1 Small ribosomal subunit protein eS1 × 1 40S ribosomal protein S27 × 1 （A0A3Q2TV39） 40S ribosomal protein S28 × 1 （A0A3Q2U825） 40S ribosomal protein S2 × 1 （A0A8V0Z891） Small ribosomal subunit protein eS4 × 1 （P47836） Ribosomal protein eS30 × 1 40S ribosomal protein S26 × 1 （Q5ZM66） Small ribosomal subunit protein eS6 × 1 （P47838） 40S ribosomal protein S7 × 1 （F1NN16） 40S ribosomal protein S8 × 1 （F1NB02） 40S ribosomal protein S11 × 1 （Q98TH5） Small ribosomal subunit protein uS15 × 1 （Q6ITC7） Ribosomal protein S14 × 1 （Q5ZHW8） 40S ribosomal protein S20 × 1 （F1NH93） Small ribosomal subunit protein eS21 × 1 40S ribosomal protein S15a × 1 （A0A3Q3A7P6） Small ribosomal subunit protein uS12 × 1 40S ribosomal protein S24 × 1 （F1NF89） Small ribosomal subunit protein uS2 × 1 （P50890） Ribosomal protein S16 × 1 （R4GGJ0） Ubiquitin × 1 （P79781） Ribosomal protein S5 × 1 （G1TFM5） Small ribosomal subunit protein RACK1 × 1 （P63247） 40S ribosomal protein S29 × 1 （A0A8V0Z8V3） Ribosomal protein S10 × 1 （E1C4N0） Small ribosomal subunit protein eS12 × 1 （P84175） Small ribosomal subunit protein uS19 × 1 （P62846） 40S ribosomal protein S18 × 1 （G1TPG3） 40S ribosomal protein S19 × 1 40S ribosomal protein S25 × 1 （A0A8V1A7V4） DNA-(apurinic or apyrimidinic site) lyase × 1 （F1NPA9） Phe tRNA × 1 Small ribosomal subunit protein eS17 × 1 （P08636） MG MAGNESIUM ION × 494 ZN ZINC ION × 7 ELECTRON MICROSCOPY cryo-EM buffer：pH 7.5 cryo-EM vitrification conditions：Cryogen ETHANE Resolution 2.50 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

Other PDB Difference from Current Entry 8Q7Z Assembly / Oligomeric State Construct Mutations and Modifications Ligands, Ions and Non-polymers Method and Experimental Conditions Structure Quality
3JAG Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UAA stop codon Deposited 2015-06-10 Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 80 PDB declaration: 87-meric
Chain JJ 2–186（185 aa）
Not recorded MG MAGNESIUM ION × 195 ZN ZINC ION × 8 SF4 IRON/SULFUR CLUSTER × 2 ADP ADENOSINE-5'-DIPHOSPHATE × 2 ELECTRON MICROSCOPY
cryo-EM buffer 50 mM HEPES, 100 mM potassium acetate, 5 mM magnesium acetate, 1 mM DTT；pH 7.4；50 mM HEPES, 100 mM potassium acetate, 5 mM magnesium acetate, 1 mM DTT
cryo-EM vitrification conditions After 30 second wait time, blot for 3 seconds before plunging；Cryogen ETHANE；After 30 second wait time, blot for 3 seconds before plunging into liquid ethane (FEI VITROBOT MARK III).
Resolution 3.65 Å
3JAH Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UAG stop codon Deposited 2015-06-10 Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 80 PDB declaration: 87-meric
Chain JJ 2–186（185 aa）
Not recorded MG MAGNESIUM ION × 195 ZN ZINC ION × 8 SF4 IRON/SULFUR CLUSTER × 2 ADP ADENOSINE-5'-DIPHOSPHATE × 2 ELECTRON MICROSCOPY
cryo-EM buffer 50 mM HEPES, 100 mM potassium acetate, 5 mM magnesium acetate, 1 mM DTT；pH 7.4；50 mM HEPES, 100 mM potassium acetate, 5 mM magnesium acetate, 1 mM DTT
cryo-EM vitrification conditions After 30 second wait time, blot for 3 seconds before plunging；Cryogen ETHANE；After 30 second wait time, blot for 3 seconds before plunging into liquid ethane (FEI VITROBOT MARK III).
Resolution 3.45 Å
3JAI Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UGA stop codon Deposited 2015-06-10 Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 80 PDB declaration: 87-meric
Chain JJ 2–186（185 aa）
Not recorded MG MAGNESIUM ION × 195 ZN ZINC ION × 8 SF4 IRON/SULFUR CLUSTER × 2 ADP ADENOSINE-5'-DIPHOSPHATE × 2 ELECTRON MICROSCOPY
cryo-EM buffer 50 mM HEPES, 100 mM potassium acetate, 5 mM magnesium acetate, 1 mM DTT；pH 7.4；50 mM HEPES, 100 mM potassium acetate, 5 mM magnesium acetate, 1 mM DTT
cryo-EM vitrification conditions After 30 second wait time, blot for 3 seconds before plunging；Cryogen ETHANE；After 30 second wait time, blot for 3 seconds before plunging into liquid ethane (FEI VITROBOT MARK III).
Resolution 3.65 Å
4D5L Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state Deposited 2014-11-05 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 33 PDB declaration: 34-meric
Chain J 1–194（194 aa）
Not recorded No recorded non-water small molecule ELECTRON MICROSCOPY
cryo-EM buffer 20 MM TRIS PH 7.5, 100 MM KCL, 1 MM DTT, 2.5 MM MGCL2, 0.5 MM GTP；pH 7.5；20 MM TRIS PH 7.5, 100 MM KCL, 1 MM DTT, 2.5 MM MGCL2, 0.5 MM GTP
cryo-EM vitrification conditions Cryogen ETHANE；LIQUID ETHANE
Resolution 9.00 Å
4KZX Rabbit 40S ribosomal subunit in complex with eIF1. Deposited 2013-05-30 Different oligomeric state Different ligand/ion Different experimental method Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 34 PDB declaration: 35-meric
Chain J 1–194（194 aa）
Not recorded No recorded non-water small molecule X-RAY DIFFRACTION
X-ray crystallization conditions VAPOR DIFFUSION；pH 8.5；292 K；0.1M Ammonium acetate, 0.05M Tris-HCl pH 8.5, 2.5% PEG-20K, 4-6% MPD, 5.0mM Mg acetate, 2.0mM TCEP, vapor diffusion, temperature 292K
Resolution 7.81 Å R-free 0.347
4KZY Rabbit 40S ribosomal subunit in complex with eIF1 and eIF1A. Deposited 2013-05-30 Different oligomeric state Different ligand/ion Different experimental method Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 35 PDB declaration: 36-meric
Chain J 1–194（194 aa）
Not recorded No recorded non-water small molecule X-RAY DIFFRACTION
X-ray crystallization conditions VAPOR DIFFUSION；pH 8.5；292 K；0.1M Ammonium acetate, 0.05M Tris-HCl pH 8.5, 2.5% PEG-20K, 4-6% MPD, 5.0mM Mg acetate, 2.0mM TCEP, vapor diffusion, temperature 292K
Resolution 7.01 Å R-free 0.348
4KZZ Rabbit 40S ribosomal subunit in complex with mRNA, initiator tRNA and eIF1A Deposited 2013-05-30 Different oligomeric state Different ligand/ion Different experimental method Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 34 PDB declaration: 37-meric
Chain J 1–194（194 aa）
Not recorded No recorded non-water small molecule X-RAY DIFFRACTION
X-ray crystallization conditions VAPOR DIFFUSION；pH 8.5；292 K；0.1M Ammonium acetate, 0.05M Tris-HCl pH 8.5, 2.5% PEG-20K, 4-6% MPD, 5.0mM Mg acetate, 2.0mM TCEP, vapor diffusion, temperature 292K
Resolution 7.03 Å R-free 0.359
5K0Y m48S late-stage initiation complex, purified from rabbit reticulocytes lysates, displaying eIF2 ternary complex and eIF3 i and g subunits relocated to the intersubunit face Deposited 2016-05-17 Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 39 PDB declaration: 42-meric
Chain K 7–188（182 aa）
Not recorded No recorded non-water small molecule ELECTRON MICROSCOPY
cryo-EM buffer pH 7.6
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 5.80 Å
5LZS Structure of the mammalian ribosomal elongation complex with aminoacyl-tRNA, eEF1A, and didemnin B Deposited 2016-10-02 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 78 PDB declaration: 86-meric
Chain JJ 1–194（194 aa）
Not recorded MG MAGNESIUM ION × 276 ZN ZINC ION × 8 GDP GUANOSINE-5'-DIPHOSPHATE × 1 7C4 (2~{S})-~{N}-[(2~{R})-1-[[(3~{S},6~{S},8~{S},12~{S},13~{R},16~{S},17~{R},20~{S},23~{S})-13-[(2~{S})-butan-2-yl]-20-[(4-methoxyphenyl)methyl]-6,17,21-trimethyl-3-(2-methylpropyl)-12-oxidanyl-2,5,7,10,15,19,22-heptakis(oxidanylidene)-8-propan-2-yl-9,18-dioxa-1,4,14,21-tetrazabicyclo[21.3.0]hexacosan-16-yl]amino]-4-methyl-1-oxidanylidene-pentan-2-yl]-~{N}-methyl-1-[(2~{S})-2-oxidanylpropanoyl]pyrrolidine-2-carboxamide × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.4
cryo-EM vitrification conditions Cryogen ETHANE；3 ul aliquots were applied to the grid and incubated for 30 s, before blotting for 3s to remove excess solution.
Resolution 3.31 Å
5LZT Structure of the mammalian ribosomal termination complex with eRF1 and eRF3. Deposited 2016-10-02 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 80 PDB declaration: 87-meric
Chain JJ 1–194（194 aa）
Not recorded MG MAGNESIUM ION × 282 ZN ZINC ION × 8 GCP PHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTER × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.4
cryo-EM vitrification conditions Cryogen ETHANE；3 ul aliquots were applied to the grid and incubated for 30 s, before blotting for 3s to remove excess solution.
Resolution 3.65 Å
5LZU Structure of the mammalian ribosomal termination complex with accommodated eRF1 Deposited 2016-10-02 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 78 PDB declaration: 85-meric
Chain JJ 1–194（194 aa）
Not recorded MG MAGNESIUM ION × 258 ZN ZINC ION × 8 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.4
cryo-EM vitrification conditions Cryogen ETHANE；3 ul aliquots were applied to the grid and incubated for 30 s, before blotting for 3s to remove excess solution.
Resolution 3.75 Å
5LZV Structure of the mammalian ribosomal termination complex with accommodated eRF1(AAQ) and ABCE1. Deposited 2016-10-02 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 80 PDB declaration: 87-meric
Chain JJ 1–194（194 aa）
Not recorded MG MAGNESIUM ION × 300 ZN ZINC ION × 8 SF4 IRON/SULFUR CLUSTER × 2 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.4
cryo-EM vitrification conditions Cryogen ETHANE；3 ul aliquots were applied to the grid and incubated for 30 s, before blotting for 3s to remove excess solution.
Resolution 3.35 Å
5LZW Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a truncated mRNA. Deposited 2016-10-02 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 80 PDB declaration: 87-meric
Chain JJ 1–194（194 aa）
Not recorded MG MAGNESIUM ION × 281 ZN ZINC ION × 8 GCP PHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTER × 2 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.4
cryo-EM vitrification conditions Cryogen ETHANE；3 ul aliquots were applied to the grid and incubated for 30 s, before blotting for 3s to remove excess solution.
Resolution 3.53 Å
5LZX Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a UGA stop codon. Deposited 2016-10-02 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 80 PDB declaration: 87-meric
Chain JJ 1–194（194 aa）
Not recorded MG MAGNESIUM ION × 264 ZN ZINC ION × 8 GCP PHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTER × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.4
cryo-EM vitrification conditions Cryogen ETHANE；3 ul aliquots were applied to the grid and incubated for 30 s, before blotting for 3s to remove excess solution.
Resolution 3.67 Å
5LZY Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a polyadenylated mRNA. Deposited 2016-10-02 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 79 PDB declaration: 86-meric
Chain JJ 1–194（194 aa）
Not recorded MG MAGNESIUM ION × 236 ZN ZINC ION × 8 GCP PHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTER × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.4
cryo-EM vitrification conditions Cryogen ETHANE；3 ul aliquots were applied to the grid and incubated for 30 s, before blotting for 3s to remove excess solution.
Resolution 3.99 Å
5LZZ Structure of the mammalian rescue complex with Pelota and Hbs1l (combined) Deposited 2016-10-02 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 80 PDB declaration: 87-meric
Chain JJ 1–194（194 aa）
Not recorded MG MAGNESIUM ION × 264 ZN ZINC ION × 8 GCP PHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTER × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.4
cryo-EM vitrification conditions Cryogen ETHANE；3 ul aliquots were applied to the grid and incubated for 30 s, before blotting for 3s to remove excess solution.
Resolution 3.47 Å
6D90 Mammalian 80S ribosome with a double translocated CrPV-IRES, P-site tRNA and eRF1. Deposited 2018-04-27 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 79 PDB declaration: 85-meric
Chain KK 1–194（194 aa）
Not recorded No recorded non-water small molecule ELECTRON MICROSCOPY
cryo-EM buffer pH 7.4
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 3.20 Å
6D9J Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1. Deposited 2018-04-30 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 79 PDB declaration: 85-meric
Chain KK 1–194（194 aa）
Not recorded ZN ZINC ION × 4 MG MAGNESIUM ION × 2 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.4
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 3.20 Å
6GZ3 tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-1 (TI-POST-1) Deposited 2018-07-03 Different construct Different oligomeric state Different ligand/ion Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 79 PDB declaration: 86-meric
Chain BJ 2–180（179 aa）
Not recorded MG MAGNESIUM ION × 327 ZN ZINC ION × 5 GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 3.60 Å
6HCF Structure of the rabbit 80S ribosome stalled on globin mRNA at the stop codon Deposited 2018-08-14 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 81 PDB declaration: 87-meric
Chain K1 1–194（194 aa）
Not recorded MG MAGNESIUM ION × 300 ZN ZINC ION × 8 SF4 IRON/SULFUR CLUSTER × 2 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.4
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 3.90 Å
6HCJ Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs Deposited 2018-08-15 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 78 PDB declaration: 85-meric
Chain K2 1–194（194 aa）
Not recorded MG MAGNESIUM ION × 300 ZN ZINC ION × 8 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.4
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 3.80 Å
6HCM Structure of the rabbit collided di-ribosome (stalled monosome) Deposited 2018-08-15 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 81 PDB declaration: 87-meric
Chain K1 1–194（194 aa）
Not recorded MG MAGNESIUM ION × 300 ZN ZINC ION × 8 SF4 IRON/SULFUR CLUSTER × 2 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.4
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 6.80 Å
6HCQ Structure of the rabbit collided di-ribosome (collided monosome) Deposited 2018-08-16 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 78 PDB declaration: 85-meric
Chain K2 1–194（194 aa）
Not recorded MG MAGNESIUM ION × 300 ZN ZINC ION × 8 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.4
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 6.50 Å
6MTB Rabbit 80S ribosome with P- and Z-site tRNAs (unrotated state) Deposited 2018-10-19 Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 76 PDB declaration: 83-meric
Chain JJ 2–186（185 aa）
Not recorded MG MAGNESIUM ION × 297 ZN ZINC ION × 8 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.4
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 3.60 Å
6MTC Rabbit 80S ribosome with Z-site tRNA and IFRD2 (unrotated state) Deposited 2018-10-19 Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 77 PDB declaration: 82-meric
Chain JJ 2–186（185 aa）
Not recorded MG MAGNESIUM ION × 297 ZN ZINC ION × 8 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.4
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 3.40 Å
6MTD Rabbit 80S ribosome with eEF2 and SERBP1 (unrotated state with 40S head swivel) Deposited 2018-10-19 Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 80 PDB declaration: 84-meric
Chain JJ 2–186（185 aa）
Not recorded MG MAGNESIUM ION × 297 ZN ZINC ION × 8 GDP GUANOSINE-5'-DIPHOSPHATE × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.4
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 3.30 Å
6MTE Rabbit 80S ribosome with eEF2 and SERBP1 (rotated state) Deposited 2018-10-19 Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 79 PDB declaration: 83-meric
Chain JJ 2–186（185 aa）
Not recorded MG MAGNESIUM ION × 298 ZN ZINC ION × 8 GDP GUANOSINE-5'-DIPHOSPHATE × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.4
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 3.40 Å
6P4G Structure of a mammalian small ribosomal subunit in complex with the Israeli Acute Paralysis Virus IRES (Class 1) Deposited 2019-05-27 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 34 PDB declaration: 36-meric
Chain K 1–194（194 aa）
Not recorded No recorded non-water small molecule ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE；Blot force = 3s Wait time = 15s Drain time = 0s Blot time = 2.5 to 3 s
cryo-EM vitrification conditions Cryogen ETHANE；Blot force = 3s Wait time = 15s Drain time = 0s Blot time = 2.5 to 3 s
Resolution 3.10 Å
6P4H Structure of a mammalian small ribosomal subunit in complex with the Israeli Acute Paralysis Virus IRES (Class 2) Deposited 2019-05-27 Different oligomeric state Different ligand/ion Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 34 PDB declaration: 36-meric
Chain K 1–194（194 aa）
Not recorded No recorded non-water small molecule ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 3.20 Å
6P5I Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 1) Deposited 2019-05-30 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 76 PDB declaration: 81-meric
Chain K 1–194（194 aa）
Not recorded No recorded non-water small molecule ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE；Blot force = 3s Wait time = 15s Drain time = 0s Blot time = 2.5 to 3 s
Resolution 3.10 Å
6P5J Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 2) Deposited 2019-05-30 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 76 PDB declaration: 81-meric
Chain K 1–194（194 aa）
Not recorded No recorded non-water small molecule ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE；Blot force = 3s Wait time = 15s Drain time = 0s Blot time = 2.5 to 3 s
Resolution 3.10 Å
6P5K Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 3) Deposited 2019-05-30 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 76 PDB declaration: 81-meric
Chain K 1–194（194 aa）
Not recorded No recorded non-water small molecule ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE；Blot force = 3s Wait time = 15s Drain time = 0s Blot time = 2.5 to 3 s
Resolution 3.10 Å
6P5N Structure of a mammalian 80S ribosome in complex with a single translocated Israeli Acute Paralysis Virus IRES and eRF1 Deposited 2019-05-30 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 77 PDB declaration: 82-meric
Chain K 1–194（194 aa）
Not recorded No recorded non-water small molecule ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE；Blot force = 3s Wait time = 15s Drain time = 0s Blot time = 2.5s
Resolution 3.20 Å
6R5Q Structure of XBP1u-paused ribosome nascent chain complex (post-state) Deposited 2019-03-25 Different construct Different oligomeric state Different ligand/ion Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 78 PDB declaration: 85-meric
Chain DD 2–186（185 aa）
Not recorded MG MAGNESIUM ION × 299 ZN ZINC ION × 6 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 3.00 Å
6R6G Structure of XBP1u-paused ribosome nascent chain complex with SRP. Deposited 2019-03-27 Different construct Different oligomeric state Different ligand/ion Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 84 PDB declaration: 92-meric
Chain DD 2–186（185 aa）
Not recorded MG MAGNESIUM ION × 299 ZN ZINC ION × 5 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 3.70 Å
6R6P Structure of XBP1u-paused ribosome nascent chain complex (rotated state) Deposited 2019-03-27 Different construct Different oligomeric state Different ligand/ion Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 78 PDB declaration: 85-meric
Chain XX 2–186（185 aa）
Not recorded MG MAGNESIUM ION × 159 ZN ZINC ION × 5 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 3.10 Å
6R7Q Structure of XBP1u-paused ribosome nascent chain complex with Sec61. Deposited 2019-03-29 Different construct Different oligomeric state Different ligand/ion Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 81 PDB declaration: 88-meric
Chain DD 2–186（185 aa）
Not recorded ZN ZINC ION × 6 MG MAGNESIUM ION × 299 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 3.90 Å
6SGC Rabbit 80S ribosome stalled on a poly(A) tail Deposited 2019-08-03 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 79 PDB declaration: 86-meric
Chain K1 1–194（194 aa）
Not recorded MG MAGNESIUM ION × 275 ZN ZINC ION × 8 SPD SPERMIDINE × 2 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.4
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 2.80 Å
6W2S Structure of the Cricket Paralysis Virus 5-UTR IRES (CrPV 5-UTR-IRES) bound to the small ribosomal subunit in the open state (Class 1) Deposited 2020-03-08 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 41 PDB declaration: 43-meric
Chain K 1–194（194 aa）
Not recorded MG MAGNESIUM ION × 1 ZN ZINC ION × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE；Grids were blotted for 2.5s and flash cooled in liquid ethane
Resolution 3.47 Å
6W2T Structure of the Cricket Paralysis Virus 5-UTR IRES (CrPV 5-UTR-IRES) bound to the small ribosomal subunit in the closed state (Class 2) Deposited 2020-03-08 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 42 PDB declaration: 44-meric
Chain K 1–194（194 aa）
Not recorded MG MAGNESIUM ION × 1 ZN ZINC ION × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE；Grids were blotted for 2.5s and flash cooled in liquid ethane
Resolution 3.36 Å
6YAL Mammalian 48S late-stage initiation complex with beta-globin mRNA Deposited 2020-03-12 Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 38 PDB declaration: 41-meric
Chain L 7–188（182 aa）
Not recorded SF4 IRON/SULFUR CLUSTER × 2 MG MAGNESIUM ION × 1 GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER × 2 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.4
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 3.00 Å
6YAM Mammalian 48S late-stage translation initiation complex (LS48S+eIF3 IC) with beta-globin mRNA Deposited 2020-03-12 Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 47 PDB declaration: 50-meric
Chain L 7–188（182 aa）
Not recorded SF4 IRON/SULFUR CLUSTER × 2 MG MAGNESIUM ION × 1 GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER × 2 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.4
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 3.60 Å
6YAN Mammalian 48S late-stage translation initiation complex with histone 4 mRNA Deposited 2020-03-12 Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 36 PDB declaration: 39-meric
Chain L 7–188（182 aa）
Not recorded No recorded non-water small molecule ELECTRON MICROSCOPY
cryo-EM buffer pH 7.4
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 3.48 Å
6ZVK The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanism Deposited 2020-07-24 Different construct Different oligomeric state Different ligand/ion Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 80 PDB declaration: 85-meric
Chain d3 2–186（185 aa）
Not recorded ZN ZINC ION × 6 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 3.49 Å
7A01 The Halastavi arva virus intergenic region IRES promotes translation by the simplest possible initiation mechanism Deposited 2020-08-05 Different construct Different oligomeric state Different ligand/ion Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 80 PDB declaration: 85-meric
Chain d3 2–186（185 aa）
Not recorded ZN ZINC ION × 6 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 3.60 Å
7JQB SARS-CoV-2 Nsp1 and rabbit 40S ribosome complex Deposited 2020-08-10 Different oligomeric state Different ligand/ion Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 33 PDB declaration: 34-meric
Chain K 1–194（194 aa）
Not recorded No recorded non-water small molecule ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 2.70 Å
7JQC SARS-CoV-2 Nsp1, CrPV IRES and rabbit 40S ribosome complex Deposited 2020-08-10 Different oligomeric state Different ligand/ion Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 33 PDB declaration: 35-meric
Chain K 1–194（194 aa）
Not recorded No recorded non-water small molecule ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 3.30 Å
7MDZ 80S rabbit ribosome stalled with benzamide-CHX Deposited 2021-04-06 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 75 PDB declaration: 81-meric
Chain JJ 1–194（194 aa）
Not recorded MG MAGNESIUM ION × 277 ZN ZINC ION × 8 Z2V N-[(1R,3S,4R,5S)-3-{(1R)-2-[(2R,4r,6S)-2,6-dihydroxypiperidin-4-yl]-1-hydroxyethyl}-4-hydroxy-1,5-dimethylcyclohexyl]benzamide × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.4
cryo-EM vitrification conditions Cryogen ETHANE；3 sec blot
Resolution 3.20 Å
7O7Y Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (high resolution) Deposited 2021-04-14 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 79 PDB declaration: 86-meric
Chain Ai 1–194（194 aa）
Not recorded SPD SPERMIDINE × 30 SPM SPERMINE × 3 MG MAGNESIUM ION × 420 UNX UNKNOWN LIGAND × 330 ZN ZINC ION × 8 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.4
cryo-EM vitrification conditions Cryogen ETHANE-PROPANE
Resolution 2.20 Å
7O7Z Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (classified for pseudoknot) Deposited 2021-04-14 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 79 PDB declaration: 86-meric
Chain Ai 1–194（194 aa）
Not recorded SPD SPERMIDINE × 30 SPM SPERMINE × 3 MG MAGNESIUM ION × 420 UNX UNKNOWN LIGAND × 329 ZN ZINC ION × 8 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.4
cryo-EM vitrification conditions Cryogen ETHANE-PROPANE
Resolution 2.40 Å
7O80 Rabbit 80S ribosome in complex with eRF1 and ABCE1 stalled at the STOP codon in the mutated SARS-CoV-2 slippery site Deposited 2021-04-14 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 81 PDB declaration: 88-meric
Chain Ai 1–194（194 aa）
Not recorded SPD SPERMIDINE × 1 MG MAGNESIUM ION × 355 UNX UNKNOWN LIGAND × 374 ZN ZINC ION × 8 GTP GUANOSINE-5'-TRIPHOSPHATE × 1 SF4 IRON/SULFUR CLUSTER × 2 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.4
cryo-EM vitrification conditions Cryogen ETHANE-PROPANE
Resolution 2.90 Å
7O81 Rabbit 80S ribosome colliding in another ribosome stalled by the SARS-CoV-2 pseudoknot Deposited 2021-04-14 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 80 PDB declaration: 87-meric
Chain Ai 1–194（194 aa）
Not recorded MG MAGNESIUM ION × 349 UNX UNKNOWN LIGAND × 266 ZN ZINC ION × 8 SPD SPERMIDINE × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.4
cryo-EM vitrification conditions Cryogen ETHANE-PROPANE
Resolution 3.10 Å
7OYD Cryo-EM structure of a rabbit 80S ribosome with zebrafish Dap1b Deposited 2021-06-24 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 79 PDB declaration: 83-meric
Chain JJ 1–194（194 aa）
Not recorded MG MAGNESIUM ION × 201 ZN ZINC ION × 7 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.6
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 2.30 Å
7SYG Structure of the HCV IRES binding to the 40S ribosomal subunit, closed conformation. Structure 1(delta dII) Deposited 2021-11-25 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 34 PDB declaration: 36-meric
Chain K 1–194（194 aa）
Not recorded ZN ZINC ION × 2 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE-PROPANE；4 second blot time, force 3
Resolution 4.30 Å
7SYH Structure of the HCV IRES binding to the 40S ribosomal subunit, closed conformation. Structure 2(delta dII) Deposited 2021-11-25 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 34 PDB declaration: 36-meric
Chain K 1–194（194 aa）
Not recorded ZN ZINC ION × 2 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE-PROPANE；4 second blot time, force 3
Resolution 4.60 Å
7SYI Structure of the HCV IRES binding to the 40S ribosomal subunit, closed conformation. Structure 3(delta dII) Deposited 2021-11-25 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 34 PDB declaration: 36-meric
Chain K 1–194（194 aa）
Not recorded ZN ZINC ION × 2 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE-PROPANE；4 second blot time, force 3
Resolution 4.50 Å
7SYJ Structure of the HCV IRES binding to the 40S ribosomal subunit, closed conformation. Structure 4(delta dII) Deposited 2021-11-25 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 34 PDB declaration: 36-meric
Chain K 1–194（194 aa）
Not recorded ZN ZINC ION × 2 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE-PROPANE；4 second blot time, force 3
Resolution 4.80 Å
7SYK Structure of the HCV IRES binding to the 40S ribosomal subunit, closed conformation. Structure 5(delta dII) Deposited 2021-11-25 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 34 PDB declaration: 36-meric
Chain K 1–194（194 aa）
Not recorded ZN ZINC ION × 2 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE-PROPANE；4 second blot time, force 3
Resolution 4.20 Å
7SYL Structure of the HCV IRES bound to the 40S ribosomal subunit, closed conformation. Structure 6(delta dII) Deposited 2021-11-25 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 34 PDB declaration: 36-meric
Chain K 1–194（194 aa）
Not recorded ZN ZINC ION × 2 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE-PROPANE；4 second blot time, force 3
Resolution 4.50 Å
7SYM Structure of the HCV IRES bound to the 40S ribosomal subunit, head opening. Structure 7(delta dII) Deposited 2021-11-25 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 34 PDB declaration: 36-meric
Chain K 1–194（194 aa）
Not recorded ZN ZINC ION × 2 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE-PROPANE；4 second blot time, force 3
Resolution 4.80 Å
7SYN Structure of the HCV IRES bound to the 40S ribosomal subunit, head opening. Structure 8(delta dII) Deposited 2021-11-25 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 34 PDB declaration: 36-meric
Chain K 1–194（194 aa）
Not recorded ZN ZINC ION × 2 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE-PROPANE；4 second blot time, force 3
Resolution 4.00 Å
7SYO Structure of the HCV IRES bound to the 40S ribosomal subunit, head open. Structure 9(delta dII) Deposited 2021-11-25 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 34 PDB declaration: 36-meric
Chain K 1–194（194 aa）
Not recorded ZN ZINC ION × 2 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE-PROPANE；4 second blot time, force 3
Resolution 4.60 Å
7SYP Structure of the wt IRES and 40S ribosome binary complex, open conformation. Structure 10(wt) Deposited 2021-11-25 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 34 PDB declaration: 37-meric
Chain K 1–194（194 aa）
Not recorded ZN ZINC ION × 2 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE-PROPANE；4 second blot time, force 3
Resolution 4.00 Å
7SYQ Structure of the wt IRES and 40S ribosome ternary complex, open conformation. Structure 11(wt) Deposited 2021-11-25 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 35 PDB declaration: 37-meric
Chain K 1–194（194 aa）
Not recorded ZN ZINC ION × 2 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE-PROPANE；4 second blot time, force 3
Resolution 3.80 Å
7SYR Structure of the wt IRES eIF2-containing 48S initiation complex, closed conformation. Structure 12(wt). Deposited 2021-11-25 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 36 PDB declaration: 39-meric
Chain K 1–194（194 aa）
Not recorded ZN ZINC ION × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE-PROPANE；4 second blot time, force 3
Resolution 3.60 Å
7SYS Structure of the delta dII IRES eIF2-containing 48S initiation complex, closed conformation. Structure 12(delta dII). Deposited 2021-11-25 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 36 PDB declaration: 39-meric
Chain K 1–194（194 aa）
Not recorded ZN ZINC ION × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE-PROPANE；4 second blot time, force 3
Resolution 3.50 Å
7SYT Structure of the wt IRES w/o eIF2 48S initiation complex, closed conformation. Structure 13(wt) Deposited 2021-11-25 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 34 PDB declaration: 37-meric
Chain K 1–194（194 aa）
Not recorded ZN ZINC ION × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE-PROPANE；4 second blot time, force 3
Resolution 4.40 Å
7SYU Structure of the delta dII IRES w/o eIF2 48S initiation complex, closed conformation. Structure 13(delta dII) Deposited 2021-11-25 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 34 PDB declaration: 37-meric
Chain K 1–194（194 aa）
Not recorded ZN ZINC ION × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE-PROPANE；4 second blot time, force 3
Resolution 4.60 Å
7SYV Structure of the wt IRES eIF5B-containing pre-48S initiation complex, open conformation. Structure 14(wt) Deposited 2021-11-25 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 36 PDB declaration: 39-meric
Chain K 1–194（194 aa）
Not recorded ZN ZINC ION × 2 GTP GUANOSINE-5'-TRIPHOSPHATE × 1 MG MAGNESIUM ION × 1 NA SODIUM ION × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE-PROPANE；4 second blot time, force 3
Resolution 3.90 Å
7SYW Structure of the wt IRES eIF5B-containing 48S initiation complex, closed conformation. Structure 15(wt) Deposited 2021-11-25 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 36 PDB declaration: 39-meric
Chain K 1–194（194 aa）
Not recorded ZN ZINC ION × 1 GTP GUANOSINE-5'-TRIPHOSPHATE × 1 MG MAGNESIUM ION × 1 NA SODIUM ION × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE-PROPANE；4 second blot time, force 3
Resolution 3.70 Å
7SYX Structure of the delta dII IRES eIF5B-containing 48S initiation complex, closed conformation. Structure 15(delta dII) Deposited 2021-11-25 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 36 PDB declaration: 39-meric
Chain K 1–194（194 aa）
Not recorded ZN ZINC ION × 1 MG MAGNESIUM ION × 1 GTP GUANOSINE-5'-TRIPHOSPHATE × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE-PROPANE；4 second blot time, force 3
Resolution 3.70 Å
7TOQ Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein poly-PR Deposited 2022-01-24 Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 78 PDB declaration: 84-meric
Chain AS09 2–186（185 aa）
Not recorded ZN ZINC ION × 4 ELECTRON MICROSCOPY
cryo-EM buffer pH 7
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 3.10 Å
7TOR Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20 Deposited 2022-01-24 Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 79 PDB declaration: 86-meric
Chain AS09 2–186（185 aa）
Not recorded ZN ZINC ION × 6 ELECTRON MICROSCOPY
cryo-EM buffer pH 7
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 2.90 Å
7UCJ Mammalian 80S translation initiation complex with mRNA and Harringtonine Deposited 2022-03-16 Different construct Different oligomeric state Different ligand/ion Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 73 PDB declaration: 79-meric
Chain JJ 2–186（185 aa）
Not recorded MG MAGNESIUM ION × 296 MQ6 Harringtonine × 1 ZN ZINC ION × 7 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 3.10 Å
7UCK 80S translation initiation complex with ac4c(-1) mRNA and Harringtonine Deposited 2022-03-16 Different construct Different oligomeric state Different ligand/ion Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 73 PDB declaration: 79-meric
Chain JJ 2–186（185 aa）
Not recorded MG MAGNESIUM ION × 297 MQ6 Harringtonine × 1 ZN ZINC ION × 7 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 2.80 Å
7ZJW Rabbit 80S ribosome as it decodes the Sec-UGA codon Deposited 2022-04-12 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 79 PDB declaration: 86-meric
Chain SU 1–194（194 aa）
Not recorded GTP GUANOSINE-5'-TRIPHOSPHATE × 2 SER SERINE × 1 MG MAGNESIUM ION × 225 K POTASSIUM ION × 18 ZN ZINC ION × 9 NA SODIUM ION × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.6
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 2.80 Å
7ZJX Rabbit 80S ribosome programmed with SECIS and SBP2 Deposited 2022-04-12 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 77 PDB declaration: 83-meric
Chain SU 1–194（194 aa）
Not recorded ZN ZINC ION × 8 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.6
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 3.10 Å
8BHF Cryo-EM structure of stalled rabbit 80S ribosomes in complex with human CCR4-NOT and CNOT4 Deposited 2022-10-31 Different construct Different oligomeric state Different ligand/ion Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 80 PDB declaration: 86-meric
Chain K3 2–186（185 aa）
Not recorded MG MAGNESIUM ION × 275 ZN ZINC ION × 7 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 3.10 Å
8BTK Structure of the TRAP complex with the Sec translocon and a translating ribosome Deposited 2022-11-29 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Insufficient information Heteromer；Protein × 86 PDB declaration: 92-meric
Chain Ai 1–194（194 aa）
Not recorded SPD SPERMIDINE × 30 SPM SPERMINE × 3 MG MAGNESIUM ION × 750 GTP GUANOSINE-5'-TRIPHOSPHATE × 1 AAC ACETYLAMINO-ACETIC ACID × 1 ZN ZINC ION × 8 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE-PROPANE；3.5 uL of sample was incubated on the grid for 60 seconds at 4*C and 100% humidity before being blotted and plunged into liquid ethane/propane mix cooled to liquid nitrogen temperature
Resolution 3.50 Å
8P03 48S late-stage initiation complex with m6A mRNA Deposited 2023-05-09 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 37 PDB declaration: 40-meric
Chain L 1–194（194 aa）
Not recorded MG MAGNESIUM ION × 178 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.4
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 3.04 Å
8P09 48S late-stage initiation complex with non methylated mRNA Deposited 2023-05-09 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 37 PDB declaration: 40-meric
Chain L 1–194（194 aa）
Not recorded MG MAGNESIUM ION × 230 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.4
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 3.30 Å
8P2K Ternary complex of translating ribosome, NAC and METAP1 Deposited 2023-05-16 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 82 PDB declaration: 88-meric
Chain Ai 1–194（194 aa）
Not recorded N ANY 5'-MONOPHOSPHATE NUCLEOTIDE × 73 SPD SPERMIDINE × 30 SPM SPERMINE × 3 MG MAGNESIUM ION × 420 UNX UNKNOWN LIGAND × 312 GTP GUANOSINE-5'-TRIPHOSPHATE × 1 AAC ACETYLAMINO-ACETIC ACID × 1 ZN ZINC ION × 8 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.6
cryo-EM vitrification conditions Cryogen ETHANE-PROPANE
Resolution 2.90 Å
8Q87 Structure of the G. gallus 80S rotated ribosome in complex with eEF2 and SERBP1 Deposited 2023-08-18 Different oligomeric state Different ligand/ion Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 80 PDB declaration: 85-meric
Chain Ai 1–194（194 aa）
Not recorded MG MAGNESIUM ION × 492 ZN ZINC ION × 8 GDP GUANOSINE-5'-DIPHOSPHATE × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 2.40 Å
8SCB Terminating ribosome with SRI-41315 Deposited 2023-04-05 Different oligomeric state Different ligand/ion Assembly 1 Protein–RNA Heteromer；Protein × 80 PDB declaration: 87-meric
Chain JJ 1–194（194 aa）
Not recorded MG MAGNESIUM ION × 312 ZN ZINC ION × 8 ZVM (2S,4aS)-2-cyclobutyl-10-methyl-3-phenyl-2,10-dihydropyrimido[4,5-b]quinoline-4,5(3H,4aH)-dione × 1 SF4 IRON/SULFUR CLUSTER × 2 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 2.50 Å
8SUP Structure of the 48S translation initiation complex assembled on the encephalomyocarditis virus IRES Deposited 2023-05-12 Different oligomeric state Different ligand/ion Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 44 PDB declaration: 47-meric
Chain K 1–194（194 aa）
Not recorded ZN ZINC ION × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 3.10 Å
8VFT Translating 80S rabbit ribosome stalled by emetine with eEF2 Deposited 2023-12-22 Different oligomeric state Different ligand/ion Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 78 PDB declaration: 85-meric
Chain JJ 1–194（194 aa）
Not recorded MG MAGNESIUM ION × 276 ZN ZINC ION × 8 GDP GUANOSINE-5'-DIPHOSPHATE × 1 34G emetine × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 3.30 Å
8VVP Codon sampling state obtained from Anisomycin-treated mammalian ribosomes Deposited 2024-01-31 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 80 PDB declaration: 88-meric
Chain JB 1–194（194 aa）
Not recorded MG MAGNESIUM ION × 260 ZN ZINC ION × 8 5GP GUANOSINE-5'-MONOPHOSPHATE × 1 ANM ANISOMYCIN × 1 SPD SPERMIDINE × 6 SPM SPERMINE × 2 K POTASSIUM ION × 1 GTP GUANOSINE-5'-TRIPHOSPHATE × 1 SER SERINE × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5；20 mM HEPES-KOH, pH 7.5, 100 mM KCl, 1.5 mM MgCl2, 0.5 mM Spermidine, 0.04 mM Spermine, 1 mM DTT
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 2.90 Å
8VVQ Codon sampling state of elongation inhibitor-treated mammalian ribosomes obtained from merged datasets Deposited 2024-01-31 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 80 PDB declaration: 88-meric
Chain JB 1–194（194 aa）
Not recorded MG MAGNESIUM ION × 290 ZN ZINC ION × 8 5GP GUANOSINE-5'-MONOPHOSPHATE × 1 ANM ANISOMYCIN × 1 SPD SPERMIDINE × 1 K POTASSIUM ION × 1 GTP GUANOSINE-5'-TRIPHOSPHATE × 1 SER SERINE × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5；20 mM HEPES-KOH, pH 7.5, 100 mM KCl, 1.5 mM MgCl2, 0.5 mM Spermidine, 0.04 mM Spermine, 1 mM DTT
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 2.70 Å
8VVR Post-decoding/Post-hydrolysis state obtained from Anisomycin-treated mammalian ribosomes Deposited 2024-01-31 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 80 PDB declaration: 88-meric
Chain JB 1–194（194 aa）
Not recorded MG MAGNESIUM ION × 204 ZN ZINC ION × 8 5GP GUANOSINE-5'-MONOPHOSPHATE × 1 ANM ANISOMYCIN × 1 SPD SPERMIDINE × 3 K POTASSIUM ION × 1 SER SERINE × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5；20 mM HEPES-KOH, pH 7.5, 100 mM KCl, 1.5 mM MgCl2, 0.5 mM Spermidine, 0.04 mM Spermine, 1 mM DTT
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 3.10 Å
8VVS Post-decoding post-hydrolysis state obtained from merged datasets of elongation inhibitor-treated mammalian ribosomes Deposited 2024-01-31 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 80 PDB declaration: 88-meric
Chain JB 1–194（194 aa）
Not recorded MG MAGNESIUM ION × 236 ZN ZINC ION × 8 5GP GUANOSINE-5'-MONOPHOSPHATE × 1 ANM ANISOMYCIN × 1 SPD SPERMIDINE × 4 K POTASSIUM ION × 1 SER SERINE × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5；20 mM HEPES-KOH, pH 7.5, 100 mM KCl, 1.5 mM MgCl2, 0.5 mM Spermidine, 0.04 mM Spermine, 1 mM DTT
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 3.10 Å
8VVT Mammalian ribosomes bound to Anisomycin in the rotated conformation Deposited 2024-01-31 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 80 PDB declaration: 84-meric
Chain JB 1–194（194 aa）
Not recorded MG MAGNESIUM ION × 144 ANM ANISOMYCIN × 1 SPD SPERMIDINE × 1 ZN ZINC ION × 8 GDP GUANOSINE-5'-DIPHOSPHATE × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5；20 mM HEPES-KOH, pH 7.5, 100 mM KCl, 1.5 mM MgCl2, 0.5 mM Spermidine, 0.04 mM Spermine, 1 mM DTT
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 2.90 Å
8VVU Anisomycin-bound mammalian ribosome with partially accommodated A-site tRNA Deposited 2024-01-31 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 78 PDB declaration: 86-meric
Chain JB 1–194（194 aa）
Not recorded MG MAGNESIUM ION × 102 ZN ZINC ION × 8 ANM ANISOMYCIN × 1 SPD SPERMIDINE × 1 SER SERINE × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5；20 mM HEPES-KOH, pH 7.5, 100 mM KCl, 1.5 mM MgCl2, 0.5 mM Spermidine, 0.04 mM Spermine, 1 mM DTT
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 3.80 Å
8VVV Mammalian ribosomes bound to Anisomycin in the nonrotated conformation Deposited 2024-01-31 Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 79 PDB declaration: 83-meric
Chain JJ 2–186（185 aa）
Not recorded MG MAGNESIUM ION × 294 ZN ZINC ION × 8 GDP GUANOSINE-5'-DIPHOSPHATE × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5；20 mM HEPES-KOH, pH 7.5, 100 mM KCl, 1.5 mM MgCl2, 0.5 mM Spermidine, 0.04 mM Spermine, 1 mM DTT
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 3.10 Å
9BDL 80S ribosome with angiogenin Deposited 2024-04-12 Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 75 PDB declaration: 82-meric
Chain AS09 2–186（185 aa）
Not recorded No recorded non-water small molecule ELECTRON MICROSCOPY
cryo-EM buffer pH 7
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 2.80 Å
9BDN 80S ribosome with angiogenin and tRNAAla Deposited 2024-04-12 Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 77 PDB declaration: 85-meric
Chain AS09 2–186（185 aa）
Not recorded No recorded non-water small molecule ELECTRON MICROSCOPY
cryo-EM buffer pH 7
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 3.10 Å
9BDP 80S ribosome bound with angiogenin and complex of eEF1A and Ala-tRNAAla Deposited 2024-04-12 Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 78 PDB declaration: 86-meric
Chain AS09 2–186（185 aa）
Not recorded No recorded non-water small molecule ELECTRON MICROSCOPY
cryo-EM buffer pH 7
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 3.70 Å
9C8K Rabbit Hemorrhagic Disease Virus reinitiation stimulating TURBS RNA bound to rabbit ribosome Deposited 2024-06-12 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 33 PDB declaration: 35-meric
Chain J 1–194（194 aa）
Not recorded MG MAGNESIUM ION × 74 ZN ZINC ION × 2 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5；20 mM Tris-HCl pH 7.5, 2 mM MgOAc2, 150 mM KCl
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 3.10 Å
9CPA Structure of a Mammalian DHX29-bound 43S Pre-initiation Complex Deposited 2024-07-18 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 49 PDB declaration: 51-meric
Chain L 1–194（194 aa）
Not recorded No recorded non-water small molecule ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE-PROPANE
Resolution 6.00 Å
9F1B Mammalian ternary complex of a translating 80S ribosome, NAC and NatA/E Deposited 2024-04-18 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Insufficient information Heteromer；Protein × 83 PDB declaration: 89-meric
Chain Ai 1–194（194 aa）
Not recorded MG MAGNESIUM ION × 420 ZN ZINC ION × 8 UNX UNKNOWN LIGAND × 306 IHP INOSITOL HEXAKISPHOSPHATE × 1 SPD SPERMIDINE × 30 SPM SPERMINE × 3 GTP GUANOSINE-5'-TRIPHOSPHATE × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.4
cryo-EM vitrification conditions Cryogen ETHANE-PROPANE
Resolution 3.01 Å
9F1C Mammalian quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatA/E Deposited 2024-04-18 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Insufficient information Heteromer；Protein × 84 PDB declaration: 90-meric
Chain Ai 1–194（194 aa）
Not recorded UNX UNKNOWN LIGAND × 277 MG MAGNESIUM ION × 420 GTP GUANOSINE-5'-TRIPHOSPHATE × 1 SPD SPERMIDINE × 30 SPM SPERMINE × 3 ZN ZINC ION × 8 IHP INOSITOL HEXAKISPHOSPHATE × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.4
cryo-EM vitrification conditions Cryogen ETHANE-PROPANE
Resolution 3.78 Å
9F1D Mammalian quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatA/E-HYPK Deposited 2024-04-18 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 85 PDB declaration: 91-meric
Chain Ai 1–194（194 aa）
Not recorded UNX UNKNOWN LIGAND × 295 SPD SPERMIDINE × 30 MG MAGNESIUM ION × 420 SPM SPERMINE × 3 GTP GUANOSINE-5'-TRIPHOSPHATE × 1 IHP INOSITOL HEXAKISPHOSPHATE × 1 ZN ZINC ION × 8 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.4
cryo-EM vitrification conditions Cryogen ETHANE-PROPANE
Resolution 3.26 Å
9H6Y Late-stage 48S Initiation Complex (LS48S IC) guided by the trans-RNA Deposited 2024-10-25 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 39 PDB declaration: 42-meric
Chain L 1–194（194 aa）
Not recorded SF4 IRON/SULFUR CLUSTER × 2 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.4；10 mM HEPES-KOH pH 7.4, 5 mM Mg(OAc)2, 50 mM KOAc, 10 mM NH4Cl, 2 mM DTT and Roche cOmplete protease inhibitor cocktail
cryo-EM vitrification conditions Cryogen ETHANE；The sample was incubated on the grid for 30 s and then blotted with filter paper from both sides for 1.5 s with the blot force 5
Resolution 2.90 Å
9H74 Late-stage 48S Initiation Complex with eIF3 (LS48S-eIF3 IC) guided by the trans-RNA Deposited 2024-10-25 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 48 PDB declaration: 51-meric
Chain L 1–194（194 aa）
Not recorded SF4 IRON/SULFUR CLUSTER × 2 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.4；10 mM HEPES-KOH pH 7.4, 5 mM Mg(OAc)2, 50 mM KOAc, 10 mM NH4Cl, 2 mM DTT and Roche cOmplete protease inhibitor cocktail
cryo-EM vitrification conditions Cryogen ETHANE；The sample was incubated on the grid for 30 s and then blotted with filter paper from both sides for 1.5 s with the blot force 5
Resolution 2.90 Å
9MR4 NAC: Ribosome nascent chain complex(Oxa1L) Deposited 2025-01-06 Different oligomeric state Different ligand/ion Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 78 PDB declaration: 84-meric
Chain DD 1–194（194 aa）
Not recorded ZN ZINC ION × 6 MG MAGNESIUM ION × 285 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 2.65 Å
9NDP Structure of stalled ribosome and nascent chain in complex with NMT2 and NAC Deposited 2025-02-18 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Insufficient information Heteromer；Protein × 81 PDB declaration: 87-meric
Chain DD 1–194（194 aa）
Not recorded MG MAGNESIUM ION × 296 ZN ZINC ION × 6 COA COENZYME A × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.7
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 2.82 Å
9OGY Megrivirus E 3' internal ribosome entry site (IRES) RNA core region bound to rabbit ribosome Deposited 2025-05-02 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 34 PDB declaration: 36-meric
Chain K 1–194（194 aa）
Not recorded ZN ZINC ION × 2 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5；20 mM Tris-HCl pH 7.5, 2 mM MgOAc2, 150 mM KCl
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 3.28 Å
9Q7Q ABCE1-eRF1-RNC-AMD1C Deposited 2025-08-25 Different oligomeric state Different ligand/ion Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 80 PDB declaration: 86-meric
Chain DD 1–194（194 aa）
Not recorded MG MAGNESIUM ION × 291 ZN ZINC ION × 6 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 2.86 Å
9QQA Ternary complex of translating ribosome, NAC and NMT1 Deposited 2025-03-31 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 81 PDB declaration: 86-meric
Chain Ai 1–194（194 aa）
Not recorded MG MAGNESIUM ION × 407 UNX UNKNOWN LIGAND × 187 SPD SPERMIDINE × 30 SPM SPERMINE × 3 ZN ZINC ION × 8 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.6
cryo-EM vitrification conditions Cryogen ETHANE-PROPANE
Resolution 2.80 Å
9QQB Quaternary complex of a translating ribosome, NAC, NMT1, and NatA Deposited 2025-03-31 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 84 PDB declaration: 89-meric
Chain Ai 1–194（194 aa）
Not recorded SPD SPERMIDINE × 30 SPM SPERMINE × 3 MG MAGNESIUM ION × 412 UNX UNKNOWN LIGAND × 168 ZN ZINC ION × 8 IHP INOSITOL HEXAKISPHOSPHATE × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.6
cryo-EM vitrification conditions Cryogen ETHANE-PROPANE
Resolution 3.43 Å
9RHU Rabbit 80S ribosome in complex with eRF1-AAQ, stalled at the Stop codon in mutated F2A sequence Deposited 2025-06-10 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 81 PDB declaration: 88-meric
Chain U1 1–194（194 aa）
Not recorded MG MAGNESIUM ION × 367 ZN ZINC ION × 8 K POTASSIUM ION × 37 SPD SPERMIDINE × 2 GTP GUANOSINE-5'-TRIPHOSPHATE × 1 SF4 IRON/SULFUR CLUSTER × 2 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.4
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 2.65 Å
9UZK EMCV IRES captured on mammalian 40S with initiator tRNA Deposited 2025-05-16 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 34 PDB declaration: 37-meric
Chain L 1–194（194 aa）
Not recorded No recorded non-water small molecule ELECTRON MICROSCOPY
cryo-EM buffer pH 7.4；20mM HEPES, 150mM KOAc, 2mM MgCl2, 1mM DTT, 0.5mM Spermidine, 6mM GMP-PnP
cryo-EM vitrification conditions Cryogen ETHANE-PROPANE
Resolution 4.60 Å
9UZL EMCV IRES captured on mammalian 40S ribosome with initiator tRNA and eIF2 Deposited 2025-05-16 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 36 PDB declaration: 39-meric
Chain L 1–194（194 aa）
Not recorded No recorded non-water small molecule ELECTRON MICROSCOPY
cryo-EM buffer pH 7.4；20mM HEPES, 150mM KOAc, 2mM MgCl2, 1mM DTT, 0.5mM Spermidine, 6mM GMP-PnP
cryo-EM vitrification conditions Cryogen ETHANE-PROPANE
Resolution 5.01 Å
9UZM 40S ribosome without initiation factors Deposited 2025-05-16 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 34 PDB declaration: 35-meric
Chain L 1–194（194 aa）
Not recorded No recorded non-water small molecule ELECTRON MICROSCOPY
cryo-EM buffer pH 7.4；20mM HEPES, 150mM KOAc, 2mM MgCl2, 1mM DTT, 0.5mM Spermidine, 6mM GMP-PnP
cryo-EM vitrification conditions Cryogen ETHANE-PROPANE
Resolution 4.50 Å
9YPG GTPBP1*GCP*Phe-tRNA*ribosome in the GTPase activation-like state, Structure III Deposited 2025-10-14 Different oligomeric state Different ligand/ion Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 76 PDB declaration: 84-meric
Chain JJ 1–194（194 aa）
Not recorded SPD SPERMIDINE × 1 ZN ZINC ION × 6 GTP GUANOSINE-5'-TRIPHOSPHATE × 1 PHE PHENYLALANINE × 1 ATP ADENOSINE-5'-TRIPHOSPHATE × 2 MET METHIONINE × 1 K POTASSIUM ION × 1 GCP PHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTER × 1 MG MAGNESIUM ION × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 3.00 Å
9YPO GTPBP1*GCP*Phe-tRNA*ribosome in the open state, Structure IIa Deposited 2025-10-14 Different oligomeric state Different ligand/ion Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 76 PDB declaration: 84-meric
Chain JJ 1–194（194 aa）
Not recorded SPD SPERMIDINE × 1 ZN ZINC ION × 6 GTP GUANOSINE-5'-TRIPHOSPHATE × 1 PHE PHENYLALANINE × 1 ATP ADENOSINE-5'-TRIPHOSPHATE × 2 MET METHIONINE × 1 GCP PHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTER × 1 MG MAGNESIUM ION × 1 K POTASSIUM ION × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 3.00 Å
9YPS GTPBP1*GCP*Phe-tRNA*ribosome in the open state, Structure IIb Deposited 2025-10-14 Different oligomeric state Different ligand/ion Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 76 PDB declaration: 84-meric
Chain JJ 1–194（194 aa）
Not recorded SPD SPERMIDINE × 1 ZN ZINC ION × 6 GTP GUANOSINE-5'-TRIPHOSPHATE × 1 PHE PHENYLALANINE × 1 ATP ADENOSINE-5'-TRIPHOSPHATE × 2 MET METHIONINE × 1 K POTASSIUM ION × 1 GCP PHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTER × 1 MG MAGNESIUM ION × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 3.00 Å
9YPT GTPBP1*GCP*Phe-tRNA*ribosome in the open state, Structure IIc Deposited 2025-10-14 Different oligomeric state Different ligand/ion Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 76 PDB declaration: 84-meric
Chain JJ 1–194（194 aa）
Not recorded SPD SPERMIDINE × 1 ZN ZINC ION × 6 GTP GUANOSINE-5'-TRIPHOSPHATE × 1 PHE PHENYLALANINE × 1 ATP ADENOSINE-5'-TRIPHOSPHATE × 2 MET METHIONINE × 1 GCP PHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTER × 1 MG MAGNESIUM ION × 1 K POTASSIUM ION × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 3.10 Å
9YPV GTPBP1*GCP*Phe-tRNA*ribosome in the open state, Structure IId Deposited 2025-10-14 Different oligomeric state Different ligand/ion Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 76 PDB declaration: 84-meric
Chain JJ 1–194（194 aa）
Not recorded SPD SPERMIDINE × 1 ZN ZINC ION × 6 GTP GUANOSINE-5'-TRIPHOSPHATE × 1 PHE PHENYLALANINE × 1 ATP ADENOSINE-5'-TRIPHOSPHATE × 2 MET METHIONINE × 1 K POTASSIUM ION × 1 GCP PHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTER × 1 MG MAGNESIUM ION × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 3.00 Å
9YPW GTPBP1*GDP*Phe-tRNA*ribosome in the post-GTP hydrolysis state, Structure IV Deposited 2025-10-14 Different oligomeric state Different ligand/ion Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 76 PDB declaration: 84-meric
Chain JJ 1–194（194 aa）
Not recorded SPD SPERMIDINE × 1 ZN ZINC ION × 6 GTP GUANOSINE-5'-TRIPHOSPHATE × 1 PHE PHENYLALANINE × 1 ATP ADENOSINE-5'-TRIPHOSPHATE × 2 MET METHIONINE × 1 K POTASSIUM ION × 1 GDP GUANOSINE-5'-DIPHOSPHATE × 1 MG MAGNESIUM ION × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 2.90 Å
9YPY Ribosome with accommodated A-site tRNA, Structure V Deposited 2025-10-14 Different oligomeric state Different ligand/ion Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 75 PDB declaration: 83-meric
Chain JJ 1–194（194 aa）
Not recorded SPD SPERMIDINE × 1 ZN ZINC ION × 6 GTP GUANOSINE-5'-TRIPHOSPHATE × 1 PHE PHENYLALANINE × 1 ATP ADENOSINE-5'-TRIPHOSPHATE × 2 MET METHIONINE × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 3.00 Å
9YPZ Vacant ribosome with P-site tRNA, substate 1, Structure Ia Deposited 2025-10-14 Different oligomeric state Different ligand/ion Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 75 PDB declaration: 82-meric
Chain JJ 1–194（194 aa）
Not recorded SPD SPERMIDINE × 1 ZN ZINC ION × 6 ATP ADENOSINE-5'-TRIPHOSPHATE × 2 MET METHIONINE × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 2.90 Å
9YQ0 Vacant ribosome with P-site tRNA, substate 2, Structure Ib Deposited 2025-10-14 Different oligomeric state Different ligand/ion Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 75 PDB declaration: 82-meric
Chain JJ 1–194（194 aa）
Not recorded SPD SPERMIDINE × 1 ZN ZINC ION × 6 ATP ADENOSINE-5'-TRIPHOSPHATE × 2 MET METHIONINE × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 2.90 Å
9YQ1 Vacant ribosome with P-site tRNA, substate 3, Structure Ic Deposited 2025-10-14 Different oligomeric state Different ligand/ion Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 75 PDB declaration: 82-meric
Chain JJ 1–194（194 aa）
Not recorded SPD SPERMIDINE × 1 ZN ZINC ION × 6 ATP ADENOSINE-5'-TRIPHOSPHATE × 2 MET METHIONINE × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 2.90 Å

123 other PDB entries and 123 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name B7NZS8_RABIT
Isoform —
PDB entities 57
Chains and sequence ranges Author chain Ai； PDBConstruct 1–194； UniProt 1–194

40S ribosomal protein S11

OrganismNot specified

UniProt Q98TH5

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein–RNA Heteromer Protein × 75 RNA 5 PDB declaration: 80-meric（80） Consistent with all polymer counts Chain Ak； UniProt 1–158 Not recorded 28S rRNA × 1 5.8S rRNA × 1 5S rRNA × 1 60S ribosomal protein L41 × 1 （A0A087WNH4） 60S ribosomal protein L8 × 1 （F1NIX0） Ribosomal protein uL3 × 1 （Q5ZJZ2） 60S ribosomal protein L4 C-terminal domain-containing protein × 1 （Q5ZII1） Large ribosomal subunit protein uL18 × 1 （P22451） 60S ribosomal protein L6 × 1 （Q8UWG7） Large ribosomal subunit protein uL30 × 1 （Q5ZJ56） Large ribosomal subunit protein eL8 × 1 （P32429） 60S ribosomal protein L9 × 1 （A0A1D5NVI1） Large ribosomal subunit protein uL16 × 1 （Q08200） 60S ribosomal protein L11 × 1 （A0A1D5P3B1） Large ribosomal subunit protein eL13 × 1 （P41125） 60S ribosomal protein L14 × 1 （Q98TF9） Ribosomal protein L15 × 1 （F1NQG5） Ribosomal protein uL13 × 1 60S ribosomal protein L17 × 1 （A0A1D5PR40） Ribosomal protein L18 × 1 Ribosomal protein L19 × 1 （Q5ZKK8） 60S ribosomal protein L18a × 1 60S ribosomal protein L21 × 1 （R4GIQ2） Large ribosomal subunit protein eL22 × 1 （Q98TF8） Large ribosomal subunit protein uL14 × 1 Ribosomal protein L24 × 1 （A0A8V0XRE7） Ribosomal protein uL23 × 1 Ribosomal protein L26 like 1 × 1 （F2Z4K6） Large ribosomal subunit protein eL27 × 1 （P61355） Ribosomal protein uL15 × 1 60S ribosomal protein L29 × 1 （A0A1L1RNZ2） Large ribosomal subunit protein eL30 × 1 （P67883） 60S ribosomal protein L31 × 1 （A0A1L1RT94） Ribosomal protein L32 × 1 （E1BVB1） 60S ribosomal protein L35a × 1 （A0A8V0YS49） 60S ribosomal protein L34 × 1 （A0A1L1S0X5） Large ribosomal subunit protein uL29 × 1 （Q98TF7） Large ribosomal subunit protein eL36 × 1 （Q98TF6） Ribosomal protein L37 × 1 （E1C810） 60S ribosomal protein L38 × 1 （E1BU66） Large ribosomal subunit protein eL39 × 1 （Q98TF5） Ubiquitin-60S ribosomal protein L40 × 1 （O42388） Ribosomal protein L36a like × 1 （A0A8V0YUB1） Large ribosomal subunit protein eL43 × 1 （P32046） 60S ribosomal protein L28 × 1 （Q5F346） 18S rRNA × 1 Small ribosomal subunit protein eS1 × 1 40S ribosomal protein S27 × 1 （A0A3Q2TV39） 40S ribosomal protein S28 × 1 （A0A3Q2U825） 40S ribosomal protein S2 × 1 （A0A8V0Z891） Small ribosomal subunit protein eS4 × 1 （P47836） Ribosomal protein eS30 × 1 40S ribosomal protein S26 × 1 （Q5ZM66） Small ribosomal subunit protein eS6 × 1 （P47838） 40S ribosomal protein S7 × 1 （F1NN16） 40S ribosomal protein S8 × 1 （F1NB02） 40S ribosomal protein S9 × 1 （B7NZS8） Small ribosomal subunit protein uS15 × 1 （Q6ITC7） Ribosomal protein S14 × 1 （Q5ZHW8） 40S ribosomal protein S20 × 1 （F1NH93） Small ribosomal subunit protein eS21 × 1 40S ribosomal protein S15a × 1 （A0A3Q3A7P6） Small ribosomal subunit protein uS12 × 1 40S ribosomal protein S24 × 1 （F1NF89） Small ribosomal subunit protein uS2 × 1 （P50890） Ribosomal protein S16 × 1 （R4GGJ0） Ubiquitin × 1 （P79781） Ribosomal protein S5 × 1 （G1TFM5） Small ribosomal subunit protein RACK1 × 1 （P63247） 40S ribosomal protein S29 × 1 （A0A8V0Z8V3） Ribosomal protein S10 × 1 （E1C4N0） Small ribosomal subunit protein eS12 × 1 （P84175） Small ribosomal subunit protein uS19 × 1 （P62846） 40S ribosomal protein S18 × 1 （G1TPG3） 40S ribosomal protein S19 × 1 40S ribosomal protein S25 × 1 （A0A8V1A7V4） DNA-(apurinic or apyrimidinic site) lyase × 1 （F1NPA9） Phe tRNA × 1 Small ribosomal subunit protein eS17 × 1 （P08636） MG MAGNESIUM ION × 494 ZN ZINC ION × 7 ELECTRON MICROSCOPY cryo-EM buffer：pH 7.5 cryo-EM vitrification conditions：Cryogen ETHANE Resolution 2.50 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

Other PDB Difference from Current Entry 8Q7Z Assembly / Oligomeric State Construct Mutations and Modifications Ligands, Ions and Non-polymers Method and Experimental Conditions Structure Quality
8Q87 Structure of the G. gallus 80S rotated ribosome in complex with eEF2 and SERBP1 Deposited 2023-08-18 Different oligomeric state Different ligand/ion Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 80 PDB declaration: 85-meric
Chain Ak 1–158（158 aa）
Not recorded MG MAGNESIUM ION × 492 ZN ZINC ION × 8 GDP GUANOSINE-5'-DIPHOSPHATE × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 2.40 Å

1 other PDB entries and 1 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name Q98TH5_CHICK
Isoform —
PDB entities 58
Chains and sequence ranges Author chain Ak； PDBConstruct 1–158； UniProt 1–158

Small ribosomal subunit protein uS15

OrganismNot specified

UniProt Q6ITC7

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein–RNA Heteromer Protein × 75 RNA 5 PDB declaration: 80-meric（80） Consistent with all polymer counts Chain Am； UniProt 1–151 Not recorded 28S rRNA × 1 5.8S rRNA × 1 5S rRNA × 1 60S ribosomal protein L41 × 1 （A0A087WNH4） 60S ribosomal protein L8 × 1 （F1NIX0） Ribosomal protein uL3 × 1 （Q5ZJZ2） 60S ribosomal protein L4 C-terminal domain-containing protein × 1 （Q5ZII1） Large ribosomal subunit protein uL18 × 1 （P22451） 60S ribosomal protein L6 × 1 （Q8UWG7） Large ribosomal subunit protein uL30 × 1 （Q5ZJ56） Large ribosomal subunit protein eL8 × 1 （P32429） 60S ribosomal protein L9 × 1 （A0A1D5NVI1） Large ribosomal subunit protein uL16 × 1 （Q08200） 60S ribosomal protein L11 × 1 （A0A1D5P3B1） Large ribosomal subunit protein eL13 × 1 （P41125） 60S ribosomal protein L14 × 1 （Q98TF9） Ribosomal protein L15 × 1 （F1NQG5） Ribosomal protein uL13 × 1 60S ribosomal protein L17 × 1 （A0A1D5PR40） Ribosomal protein L18 × 1 Ribosomal protein L19 × 1 （Q5ZKK8） 60S ribosomal protein L18a × 1 60S ribosomal protein L21 × 1 （R4GIQ2） Large ribosomal subunit protein eL22 × 1 （Q98TF8） Large ribosomal subunit protein uL14 × 1 Ribosomal protein L24 × 1 （A0A8V0XRE7） Ribosomal protein uL23 × 1 Ribosomal protein L26 like 1 × 1 （F2Z4K6） Large ribosomal subunit protein eL27 × 1 （P61355） Ribosomal protein uL15 × 1 60S ribosomal protein L29 × 1 （A0A1L1RNZ2） Large ribosomal subunit protein eL30 × 1 （P67883） 60S ribosomal protein L31 × 1 （A0A1L1RT94） Ribosomal protein L32 × 1 （E1BVB1） 60S ribosomal protein L35a × 1 （A0A8V0YS49） 60S ribosomal protein L34 × 1 （A0A1L1S0X5） Large ribosomal subunit protein uL29 × 1 （Q98TF7） Large ribosomal subunit protein eL36 × 1 （Q98TF6） Ribosomal protein L37 × 1 （E1C810） 60S ribosomal protein L38 × 1 （E1BU66） Large ribosomal subunit protein eL39 × 1 （Q98TF5） Ubiquitin-60S ribosomal protein L40 × 1 （O42388） Ribosomal protein L36a like × 1 （A0A8V0YUB1） Large ribosomal subunit protein eL43 × 1 （P32046） 60S ribosomal protein L28 × 1 （Q5F346） 18S rRNA × 1 Small ribosomal subunit protein eS1 × 1 40S ribosomal protein S27 × 1 （A0A3Q2TV39） 40S ribosomal protein S28 × 1 （A0A3Q2U825） 40S ribosomal protein S2 × 1 （A0A8V0Z891） Small ribosomal subunit protein eS4 × 1 （P47836） Ribosomal protein eS30 × 1 40S ribosomal protein S26 × 1 （Q5ZM66） Small ribosomal subunit protein eS6 × 1 （P47838） 40S ribosomal protein S7 × 1 （F1NN16） 40S ribosomal protein S8 × 1 （F1NB02） 40S ribosomal protein S9 × 1 （B7NZS8） 40S ribosomal protein S11 × 1 （Q98TH5） Ribosomal protein S14 × 1 （Q5ZHW8） 40S ribosomal protein S20 × 1 （F1NH93） Small ribosomal subunit protein eS21 × 1 40S ribosomal protein S15a × 1 （A0A3Q3A7P6） Small ribosomal subunit protein uS12 × 1 40S ribosomal protein S24 × 1 （F1NF89） Small ribosomal subunit protein uS2 × 1 （P50890） Ribosomal protein S16 × 1 （R4GGJ0） Ubiquitin × 1 （P79781） Ribosomal protein S5 × 1 （G1TFM5） Small ribosomal subunit protein RACK1 × 1 （P63247） 40S ribosomal protein S29 × 1 （A0A8V0Z8V3） Ribosomal protein S10 × 1 （E1C4N0） Small ribosomal subunit protein eS12 × 1 （P84175） Small ribosomal subunit protein uS19 × 1 （P62846） 40S ribosomal protein S18 × 1 （G1TPG3） 40S ribosomal protein S19 × 1 40S ribosomal protein S25 × 1 （A0A8V1A7V4） DNA-(apurinic or apyrimidinic site) lyase × 1 （F1NPA9） Phe tRNA × 1 Small ribosomal subunit protein eS17 × 1 （P08636） MG MAGNESIUM ION × 494 ZN ZINC ION × 7 ELECTRON MICROSCOPY cryo-EM buffer：pH 7.5 cryo-EM vitrification conditions：Cryogen ETHANE Resolution 2.50 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

Other PDB Difference from Current Entry 8Q7Z Assembly / Oligomeric State Construct Mutations and Modifications Ligands, Ions and Non-polymers Method and Experimental Conditions Structure Quality
8Q87 Structure of the G. gallus 80S rotated ribosome in complex with eEF2 and SERBP1 Deposited 2023-08-18 Different oligomeric state Different ligand/ion Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 80 PDB declaration: 85-meric
Chain Am 1–151（151 aa）
Not recorded MG MAGNESIUM ION × 492 ZN ZINC ION × 8 GDP GUANOSINE-5'-DIPHOSPHATE × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 2.40 Å

1 other PDB entries and 1 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name RS13_CHICK
Isoform —
PDB entities 59
Chains and sequence ranges Author chain Am； PDBConstruct 1–151； UniProt 1–151

Ribosomal protein S14

OrganismNot specified

UniProt Q5ZHW8

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein–RNA Heteromer Protein × 75 RNA 5 PDB declaration: 80-meric（80） Consistent with all polymer counts Chain An； UniProt 1–151 Non-standard monomer：Yes (specific site not provided by mmCIF) 28S rRNA × 1 5.8S rRNA × 1 5S rRNA × 1 60S ribosomal protein L41 × 1 （A0A087WNH4） 60S ribosomal protein L8 × 1 （F1NIX0） Ribosomal protein uL3 × 1 （Q5ZJZ2） 60S ribosomal protein L4 C-terminal domain-containing protein × 1 （Q5ZII1） Large ribosomal subunit protein uL18 × 1 （P22451） 60S ribosomal protein L6 × 1 （Q8UWG7） Large ribosomal subunit protein uL30 × 1 （Q5ZJ56） Large ribosomal subunit protein eL8 × 1 （P32429） 60S ribosomal protein L9 × 1 （A0A1D5NVI1） Large ribosomal subunit protein uL16 × 1 （Q08200） 60S ribosomal protein L11 × 1 （A0A1D5P3B1） Large ribosomal subunit protein eL13 × 1 （P41125） 60S ribosomal protein L14 × 1 （Q98TF9） Ribosomal protein L15 × 1 （F1NQG5） Ribosomal protein uL13 × 1 60S ribosomal protein L17 × 1 （A0A1D5PR40） Ribosomal protein L18 × 1 Ribosomal protein L19 × 1 （Q5ZKK8） 60S ribosomal protein L18a × 1 60S ribosomal protein L21 × 1 （R4GIQ2） Large ribosomal subunit protein eL22 × 1 （Q98TF8） Large ribosomal subunit protein uL14 × 1 Ribosomal protein L24 × 1 （A0A8V0XRE7） Ribosomal protein uL23 × 1 Ribosomal protein L26 like 1 × 1 （F2Z4K6） Large ribosomal subunit protein eL27 × 1 （P61355） Ribosomal protein uL15 × 1 60S ribosomal protein L29 × 1 （A0A1L1RNZ2） Large ribosomal subunit protein eL30 × 1 （P67883） 60S ribosomal protein L31 × 1 （A0A1L1RT94） Ribosomal protein L32 × 1 （E1BVB1） 60S ribosomal protein L35a × 1 （A0A8V0YS49） 60S ribosomal protein L34 × 1 （A0A1L1S0X5） Large ribosomal subunit protein uL29 × 1 （Q98TF7） Large ribosomal subunit protein eL36 × 1 （Q98TF6） Ribosomal protein L37 × 1 （E1C810） 60S ribosomal protein L38 × 1 （E1BU66） Large ribosomal subunit protein eL39 × 1 （Q98TF5） Ubiquitin-60S ribosomal protein L40 × 1 （O42388） Ribosomal protein L36a like × 1 （A0A8V0YUB1） Large ribosomal subunit protein eL43 × 1 （P32046） 60S ribosomal protein L28 × 1 （Q5F346） 18S rRNA × 1 Small ribosomal subunit protein eS1 × 1 40S ribosomal protein S27 × 1 （A0A3Q2TV39） 40S ribosomal protein S28 × 1 （A0A3Q2U825） 40S ribosomal protein S2 × 1 （A0A8V0Z891） Small ribosomal subunit protein eS4 × 1 （P47836） Ribosomal protein eS30 × 1 40S ribosomal protein S26 × 1 （Q5ZM66） Small ribosomal subunit protein eS6 × 1 （P47838） 40S ribosomal protein S7 × 1 （F1NN16） 40S ribosomal protein S8 × 1 （F1NB02） 40S ribosomal protein S9 × 1 （B7NZS8） 40S ribosomal protein S11 × 1 （Q98TH5） Small ribosomal subunit protein uS15 × 1 （Q6ITC7） 40S ribosomal protein S20 × 1 （F1NH93） Small ribosomal subunit protein eS21 × 1 40S ribosomal protein S15a × 1 （A0A3Q3A7P6） Small ribosomal subunit protein uS12 × 1 40S ribosomal protein S24 × 1 （F1NF89） Small ribosomal subunit protein uS2 × 1 （P50890） Ribosomal protein S16 × 1 （R4GGJ0） Ubiquitin × 1 （P79781） Ribosomal protein S5 × 1 （G1TFM5） Small ribosomal subunit protein RACK1 × 1 （P63247） 40S ribosomal protein S29 × 1 （A0A8V0Z8V3） Ribosomal protein S10 × 1 （E1C4N0） Small ribosomal subunit protein eS12 × 1 （P84175） Small ribosomal subunit protein uS19 × 1 （P62846） 40S ribosomal protein S18 × 1 （G1TPG3） 40S ribosomal protein S19 × 1 40S ribosomal protein S25 × 1 （A0A8V1A7V4） DNA-(apurinic or apyrimidinic site) lyase × 1 （F1NPA9） Phe tRNA × 1 Small ribosomal subunit protein eS17 × 1 （P08636） MG MAGNESIUM ION × 494 ZN ZINC ION × 7 ELECTRON MICROSCOPY cryo-EM buffer：pH 7.5 cryo-EM vitrification conditions：Cryogen ETHANE Resolution 2.50 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

Other PDB Difference from Current Entry 8Q7Z Assembly / Oligomeric State Construct Mutations and Modifications Ligands, Ions and Non-polymers Method and Experimental Conditions Structure Quality
8Q87 Structure of the G. gallus 80S rotated ribosome in complex with eEF2 and SERBP1 Deposited 2023-08-18 Different oligomeric state Different ligand/ion Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 80 PDB declaration: 85-meric
Chain An 1–151（151 aa）
Non-standard monomer：Yes (specific site not provided by mmCIF) MG MAGNESIUM ION × 492 ZN ZINC ION × 8 GDP GUANOSINE-5'-DIPHOSPHATE × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 2.40 Å

1 other PDB entries and 1 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name Q5ZHW8_CHICK
Isoform —
PDB entities 60
Chains and sequence ranges Author chain An； PDBConstruct 1–151； UniProt 1–151

40S ribosomal protein S20

OrganismNot specified

UniProt F1NH93

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein–RNA Heteromer Protein × 75 RNA 5 PDB declaration: 80-meric（80） Consistent with all polymer counts Chain At； UniProt 1–119 Not recorded 28S rRNA × 1 5.8S rRNA × 1 5S rRNA × 1 60S ribosomal protein L41 × 1 （A0A087WNH4） 60S ribosomal protein L8 × 1 （F1NIX0） Ribosomal protein uL3 × 1 （Q5ZJZ2） 60S ribosomal protein L4 C-terminal domain-containing protein × 1 （Q5ZII1） Large ribosomal subunit protein uL18 × 1 （P22451） 60S ribosomal protein L6 × 1 （Q8UWG7） Large ribosomal subunit protein uL30 × 1 （Q5ZJ56） Large ribosomal subunit protein eL8 × 1 （P32429） 60S ribosomal protein L9 × 1 （A0A1D5NVI1） Large ribosomal subunit protein uL16 × 1 （Q08200） 60S ribosomal protein L11 × 1 （A0A1D5P3B1） Large ribosomal subunit protein eL13 × 1 （P41125） 60S ribosomal protein L14 × 1 （Q98TF9） Ribosomal protein L15 × 1 （F1NQG5） Ribosomal protein uL13 × 1 60S ribosomal protein L17 × 1 （A0A1D5PR40） Ribosomal protein L18 × 1 Ribosomal protein L19 × 1 （Q5ZKK8） 60S ribosomal protein L18a × 1 60S ribosomal protein L21 × 1 （R4GIQ2） Large ribosomal subunit protein eL22 × 1 （Q98TF8） Large ribosomal subunit protein uL14 × 1 Ribosomal protein L24 × 1 （A0A8V0XRE7） Ribosomal protein uL23 × 1 Ribosomal protein L26 like 1 × 1 （F2Z4K6） Large ribosomal subunit protein eL27 × 1 （P61355） Ribosomal protein uL15 × 1 60S ribosomal protein L29 × 1 （A0A1L1RNZ2） Large ribosomal subunit protein eL30 × 1 （P67883） 60S ribosomal protein L31 × 1 （A0A1L1RT94） Ribosomal protein L32 × 1 （E1BVB1） 60S ribosomal protein L35a × 1 （A0A8V0YS49） 60S ribosomal protein L34 × 1 （A0A1L1S0X5） Large ribosomal subunit protein uL29 × 1 （Q98TF7） Large ribosomal subunit protein eL36 × 1 （Q98TF6） Ribosomal protein L37 × 1 （E1C810） 60S ribosomal protein L38 × 1 （E1BU66） Large ribosomal subunit protein eL39 × 1 （Q98TF5） Ubiquitin-60S ribosomal protein L40 × 1 （O42388） Ribosomal protein L36a like × 1 （A0A8V0YUB1） Large ribosomal subunit protein eL43 × 1 （P32046） 60S ribosomal protein L28 × 1 （Q5F346） 18S rRNA × 1 Small ribosomal subunit protein eS1 × 1 40S ribosomal protein S27 × 1 （A0A3Q2TV39） 40S ribosomal protein S28 × 1 （A0A3Q2U825） 40S ribosomal protein S2 × 1 （A0A8V0Z891） Small ribosomal subunit protein eS4 × 1 （P47836） Ribosomal protein eS30 × 1 40S ribosomal protein S26 × 1 （Q5ZM66） Small ribosomal subunit protein eS6 × 1 （P47838） 40S ribosomal protein S7 × 1 （F1NN16） 40S ribosomal protein S8 × 1 （F1NB02） 40S ribosomal protein S9 × 1 （B7NZS8） 40S ribosomal protein S11 × 1 （Q98TH5） Small ribosomal subunit protein uS15 × 1 （Q6ITC7） Ribosomal protein S14 × 1 （Q5ZHW8） Small ribosomal subunit protein eS21 × 1 40S ribosomal protein S15a × 1 （A0A3Q3A7P6） Small ribosomal subunit protein uS12 × 1 40S ribosomal protein S24 × 1 （F1NF89） Small ribosomal subunit protein uS2 × 1 （P50890） Ribosomal protein S16 × 1 （R4GGJ0） Ubiquitin × 1 （P79781） Ribosomal protein S5 × 1 （G1TFM5） Small ribosomal subunit protein RACK1 × 1 （P63247） 40S ribosomal protein S29 × 1 （A0A8V0Z8V3） Ribosomal protein S10 × 1 （E1C4N0） Small ribosomal subunit protein eS12 × 1 （P84175） Small ribosomal subunit protein uS19 × 1 （P62846） 40S ribosomal protein S18 × 1 （G1TPG3） 40S ribosomal protein S19 × 1 40S ribosomal protein S25 × 1 （A0A8V1A7V4） DNA-(apurinic or apyrimidinic site) lyase × 1 （F1NPA9） Phe tRNA × 1 Small ribosomal subunit protein eS17 × 1 （P08636） MG MAGNESIUM ION × 494 ZN ZINC ION × 7 ELECTRON MICROSCOPY cryo-EM buffer：pH 7.5 cryo-EM vitrification conditions：Cryogen ETHANE Resolution 2.50 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

Other PDB Difference from Current Entry 8Q7Z Assembly / Oligomeric State Construct Mutations and Modifications Ligands, Ions and Non-polymers Method and Experimental Conditions Structure Quality
8Q87 Structure of the G. gallus 80S rotated ribosome in complex with eEF2 and SERBP1 Deposited 2023-08-18 Different oligomeric state Different ligand/ion Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 80 PDB declaration: 85-meric
Chain At 1–119（119 aa）
Not recorded MG MAGNESIUM ION × 492 ZN ZINC ION × 8 GDP GUANOSINE-5'-DIPHOSPHATE × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 2.40 Å

1 other PDB entries and 1 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name F1NH93_CHICK
Isoform —
PDB entities 61
Chains and sequence ranges Author chain At； PDBConstruct 1–119； UniProt 1–119

40S ribosomal protein S15a

OrganismNot specified

UniProt A0A3Q3A7P6

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein–RNA Heteromer Protein × 75 RNA 5 PDB declaration: 80-meric（80） Consistent with all polymer counts Chain Av； UniProt 1–130 Not recorded 28S rRNA × 1 5.8S rRNA × 1 5S rRNA × 1 60S ribosomal protein L41 × 1 （A0A087WNH4） 60S ribosomal protein L8 × 1 （F1NIX0） Ribosomal protein uL3 × 1 （Q5ZJZ2） 60S ribosomal protein L4 C-terminal domain-containing protein × 1 （Q5ZII1） Large ribosomal subunit protein uL18 × 1 （P22451） 60S ribosomal protein L6 × 1 （Q8UWG7） Large ribosomal subunit protein uL30 × 1 （Q5ZJ56） Large ribosomal subunit protein eL8 × 1 （P32429） 60S ribosomal protein L9 × 1 （A0A1D5NVI1） Large ribosomal subunit protein uL16 × 1 （Q08200） 60S ribosomal protein L11 × 1 （A0A1D5P3B1） Large ribosomal subunit protein eL13 × 1 （P41125） 60S ribosomal protein L14 × 1 （Q98TF9） Ribosomal protein L15 × 1 （F1NQG5） Ribosomal protein uL13 × 1 60S ribosomal protein L17 × 1 （A0A1D5PR40） Ribosomal protein L18 × 1 Ribosomal protein L19 × 1 （Q5ZKK8） 60S ribosomal protein L18a × 1 60S ribosomal protein L21 × 1 （R4GIQ2） Large ribosomal subunit protein eL22 × 1 （Q98TF8） Large ribosomal subunit protein uL14 × 1 Ribosomal protein L24 × 1 （A0A8V0XRE7） Ribosomal protein uL23 × 1 Ribosomal protein L26 like 1 × 1 （F2Z4K6） Large ribosomal subunit protein eL27 × 1 （P61355） Ribosomal protein uL15 × 1 60S ribosomal protein L29 × 1 （A0A1L1RNZ2） Large ribosomal subunit protein eL30 × 1 （P67883） 60S ribosomal protein L31 × 1 （A0A1L1RT94） Ribosomal protein L32 × 1 （E1BVB1） 60S ribosomal protein L35a × 1 （A0A8V0YS49） 60S ribosomal protein L34 × 1 （A0A1L1S0X5） Large ribosomal subunit protein uL29 × 1 （Q98TF7） Large ribosomal subunit protein eL36 × 1 （Q98TF6） Ribosomal protein L37 × 1 （E1C810） 60S ribosomal protein L38 × 1 （E1BU66） Large ribosomal subunit protein eL39 × 1 （Q98TF5） Ubiquitin-60S ribosomal protein L40 × 1 （O42388） Ribosomal protein L36a like × 1 （A0A8V0YUB1） Large ribosomal subunit protein eL43 × 1 （P32046） 60S ribosomal protein L28 × 1 （Q5F346） 18S rRNA × 1 Small ribosomal subunit protein eS1 × 1 40S ribosomal protein S27 × 1 （A0A3Q2TV39） 40S ribosomal protein S28 × 1 （A0A3Q2U825） 40S ribosomal protein S2 × 1 （A0A8V0Z891） Small ribosomal subunit protein eS4 × 1 （P47836） Ribosomal protein eS30 × 1 40S ribosomal protein S26 × 1 （Q5ZM66） Small ribosomal subunit protein eS6 × 1 （P47838） 40S ribosomal protein S7 × 1 （F1NN16） 40S ribosomal protein S8 × 1 （F1NB02） 40S ribosomal protein S9 × 1 （B7NZS8） 40S ribosomal protein S11 × 1 （Q98TH5） Small ribosomal subunit protein uS15 × 1 （Q6ITC7） Ribosomal protein S14 × 1 （Q5ZHW8） 40S ribosomal protein S20 × 1 （F1NH93） Small ribosomal subunit protein eS21 × 1 Small ribosomal subunit protein uS12 × 1 40S ribosomal protein S24 × 1 （F1NF89） Small ribosomal subunit protein uS2 × 1 （P50890） Ribosomal protein S16 × 1 （R4GGJ0） Ubiquitin × 1 （P79781） Ribosomal protein S5 × 1 （G1TFM5） Small ribosomal subunit protein RACK1 × 1 （P63247） 40S ribosomal protein S29 × 1 （A0A8V0Z8V3） Ribosomal protein S10 × 1 （E1C4N0） Small ribosomal subunit protein eS12 × 1 （P84175） Small ribosomal subunit protein uS19 × 1 （P62846） 40S ribosomal protein S18 × 1 （G1TPG3） 40S ribosomal protein S19 × 1 40S ribosomal protein S25 × 1 （A0A8V1A7V4） DNA-(apurinic or apyrimidinic site) lyase × 1 （F1NPA9） Phe tRNA × 1 Small ribosomal subunit protein eS17 × 1 （P08636） MG MAGNESIUM ION × 494 ZN ZINC ION × 7 ELECTRON MICROSCOPY cryo-EM buffer：pH 7.5 cryo-EM vitrification conditions：Cryogen ETHANE Resolution 2.50 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

Other PDB Difference from Current Entry 8Q7Z Assembly / Oligomeric State Construct Mutations and Modifications Ligands, Ions and Non-polymers Method and Experimental Conditions Structure Quality
8Q87 Structure of the G. gallus 80S rotated ribosome in complex with eEF2 and SERBP1 Deposited 2023-08-18 Different oligomeric state Different ligand/ion Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 80 PDB declaration: 85-meric
Chain Av 1–130（130 aa）
Not recorded MG MAGNESIUM ION × 492 ZN ZINC ION × 8 GDP GUANOSINE-5'-DIPHOSPHATE × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 2.40 Å

1 other PDB entries and 1 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name A0A3Q3A7P6_CHICK
Isoform —
PDB entities 63
Chains and sequence ranges Author chain Av； PDBConstruct 1–130； UniProt 1–130

40S ribosomal protein S24

OrganismNot specified

UniProt F1NF89

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein–RNA Heteromer Protein × 75 RNA 5 PDB declaration: 80-meric（80） Consistent with all polymer counts Chain Ax； UniProt 1–131 Not recorded 28S rRNA × 1 5.8S rRNA × 1 5S rRNA × 1 60S ribosomal protein L41 × 1 （A0A087WNH4） 60S ribosomal protein L8 × 1 （F1NIX0） Ribosomal protein uL3 × 1 （Q5ZJZ2） 60S ribosomal protein L4 C-terminal domain-containing protein × 1 （Q5ZII1） Large ribosomal subunit protein uL18 × 1 （P22451） 60S ribosomal protein L6 × 1 （Q8UWG7） Large ribosomal subunit protein uL30 × 1 （Q5ZJ56） Large ribosomal subunit protein eL8 × 1 （P32429） 60S ribosomal protein L9 × 1 （A0A1D5NVI1） Large ribosomal subunit protein uL16 × 1 （Q08200） 60S ribosomal protein L11 × 1 （A0A1D5P3B1） Large ribosomal subunit protein eL13 × 1 （P41125） 60S ribosomal protein L14 × 1 （Q98TF9） Ribosomal protein L15 × 1 （F1NQG5） Ribosomal protein uL13 × 1 60S ribosomal protein L17 × 1 （A0A1D5PR40） Ribosomal protein L18 × 1 Ribosomal protein L19 × 1 （Q5ZKK8） 60S ribosomal protein L18a × 1 60S ribosomal protein L21 × 1 （R4GIQ2） Large ribosomal subunit protein eL22 × 1 （Q98TF8） Large ribosomal subunit protein uL14 × 1 Ribosomal protein L24 × 1 （A0A8V0XRE7） Ribosomal protein uL23 × 1 Ribosomal protein L26 like 1 × 1 （F2Z4K6） Large ribosomal subunit protein eL27 × 1 （P61355） Ribosomal protein uL15 × 1 60S ribosomal protein L29 × 1 （A0A1L1RNZ2） Large ribosomal subunit protein eL30 × 1 （P67883） 60S ribosomal protein L31 × 1 （A0A1L1RT94） Ribosomal protein L32 × 1 （E1BVB1） 60S ribosomal protein L35a × 1 （A0A8V0YS49） 60S ribosomal protein L34 × 1 （A0A1L1S0X5） Large ribosomal subunit protein uL29 × 1 （Q98TF7） Large ribosomal subunit protein eL36 × 1 （Q98TF6） Ribosomal protein L37 × 1 （E1C810） 60S ribosomal protein L38 × 1 （E1BU66） Large ribosomal subunit protein eL39 × 1 （Q98TF5） Ubiquitin-60S ribosomal protein L40 × 1 （O42388） Ribosomal protein L36a like × 1 （A0A8V0YUB1） Large ribosomal subunit protein eL43 × 1 （P32046） 60S ribosomal protein L28 × 1 （Q5F346） 18S rRNA × 1 Small ribosomal subunit protein eS1 × 1 40S ribosomal protein S27 × 1 （A0A3Q2TV39） 40S ribosomal protein S28 × 1 （A0A3Q2U825） 40S ribosomal protein S2 × 1 （A0A8V0Z891） Small ribosomal subunit protein eS4 × 1 （P47836） Ribosomal protein eS30 × 1 40S ribosomal protein S26 × 1 （Q5ZM66） Small ribosomal subunit protein eS6 × 1 （P47838） 40S ribosomal protein S7 × 1 （F1NN16） 40S ribosomal protein S8 × 1 （F1NB02） 40S ribosomal protein S9 × 1 （B7NZS8） 40S ribosomal protein S11 × 1 （Q98TH5） Small ribosomal subunit protein uS15 × 1 （Q6ITC7） Ribosomal protein S14 × 1 （Q5ZHW8） 40S ribosomal protein S20 × 1 （F1NH93） Small ribosomal subunit protein eS21 × 1 40S ribosomal protein S15a × 1 （A0A3Q3A7P6） Small ribosomal subunit protein uS12 × 1 Small ribosomal subunit protein uS2 × 1 （P50890） Ribosomal protein S16 × 1 （R4GGJ0） Ubiquitin × 1 （P79781） Ribosomal protein S5 × 1 （G1TFM5） Small ribosomal subunit protein RACK1 × 1 （P63247） 40S ribosomal protein S29 × 1 （A0A8V0Z8V3） Ribosomal protein S10 × 1 （E1C4N0） Small ribosomal subunit protein eS12 × 1 （P84175） Small ribosomal subunit protein uS19 × 1 （P62846） 40S ribosomal protein S18 × 1 （G1TPG3） 40S ribosomal protein S19 × 1 40S ribosomal protein S25 × 1 （A0A8V1A7V4） DNA-(apurinic or apyrimidinic site) lyase × 1 （F1NPA9） Phe tRNA × 1 Small ribosomal subunit protein eS17 × 1 （P08636） MG MAGNESIUM ION × 494 ZN ZINC ION × 7 ELECTRON MICROSCOPY cryo-EM buffer：pH 7.5 cryo-EM vitrification conditions：Cryogen ETHANE Resolution 2.50 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

Other PDB Difference from Current Entry 8Q7Z Assembly / Oligomeric State Construct Mutations and Modifications Ligands, Ions and Non-polymers Method and Experimental Conditions Structure Quality
8Q87 Structure of the G. gallus 80S rotated ribosome in complex with eEF2 and SERBP1 Deposited 2023-08-18 Different oligomeric state Different ligand/ion Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 80 PDB declaration: 85-meric
Chain Ax 1–131（131 aa）
Not recorded MG MAGNESIUM ION × 492 ZN ZINC ION × 8 GDP GUANOSINE-5'-DIPHOSPHATE × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 2.40 Å

1 other PDB entries and 1 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name F1NF89_CHICK
Isoform —
PDB entities 65
Chains and sequence ranges Author chain Ax； PDBConstruct 1–131； UniProt 1–131

Small ribosomal subunit protein uS2

OrganismNot specified

UniProt P50890

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein–RNA Heteromer Protein × 75 RNA 5 PDB declaration: 80-meric（80） Consistent with all polymer counts Chain AZ； UniProt 2–296 Non-standard monomer：Yes (specific site not provided by mmCIF) 28S rRNA × 1 5.8S rRNA × 1 5S rRNA × 1 60S ribosomal protein L41 × 1 （A0A087WNH4） 60S ribosomal protein L8 × 1 （F1NIX0） Ribosomal protein uL3 × 1 （Q5ZJZ2） 60S ribosomal protein L4 C-terminal domain-containing protein × 1 （Q5ZII1） Large ribosomal subunit protein uL18 × 1 （P22451） 60S ribosomal protein L6 × 1 （Q8UWG7） Large ribosomal subunit protein uL30 × 1 （Q5ZJ56） Large ribosomal subunit protein eL8 × 1 （P32429） 60S ribosomal protein L9 × 1 （A0A1D5NVI1） Large ribosomal subunit protein uL16 × 1 （Q08200） 60S ribosomal protein L11 × 1 （A0A1D5P3B1） Large ribosomal subunit protein eL13 × 1 （P41125） 60S ribosomal protein L14 × 1 （Q98TF9） Ribosomal protein L15 × 1 （F1NQG5） Ribosomal protein uL13 × 1 60S ribosomal protein L17 × 1 （A0A1D5PR40） Ribosomal protein L18 × 1 Ribosomal protein L19 × 1 （Q5ZKK8） 60S ribosomal protein L18a × 1 60S ribosomal protein L21 × 1 （R4GIQ2） Large ribosomal subunit protein eL22 × 1 （Q98TF8） Large ribosomal subunit protein uL14 × 1 Ribosomal protein L24 × 1 （A0A8V0XRE7） Ribosomal protein uL23 × 1 Ribosomal protein L26 like 1 × 1 （F2Z4K6） Large ribosomal subunit protein eL27 × 1 （P61355） Ribosomal protein uL15 × 1 60S ribosomal protein L29 × 1 （A0A1L1RNZ2） Large ribosomal subunit protein eL30 × 1 （P67883） 60S ribosomal protein L31 × 1 （A0A1L1RT94） Ribosomal protein L32 × 1 （E1BVB1） 60S ribosomal protein L35a × 1 （A0A8V0YS49） 60S ribosomal protein L34 × 1 （A0A1L1S0X5） Large ribosomal subunit protein uL29 × 1 （Q98TF7） Large ribosomal subunit protein eL36 × 1 （Q98TF6） Ribosomal protein L37 × 1 （E1C810） 60S ribosomal protein L38 × 1 （E1BU66） Large ribosomal subunit protein eL39 × 1 （Q98TF5） Ubiquitin-60S ribosomal protein L40 × 1 （O42388） Ribosomal protein L36a like × 1 （A0A8V0YUB1） Large ribosomal subunit protein eL43 × 1 （P32046） 60S ribosomal protein L28 × 1 （Q5F346） 18S rRNA × 1 Small ribosomal subunit protein eS1 × 1 40S ribosomal protein S27 × 1 （A0A3Q2TV39） 40S ribosomal protein S28 × 1 （A0A3Q2U825） 40S ribosomal protein S2 × 1 （A0A8V0Z891） Small ribosomal subunit protein eS4 × 1 （P47836） Ribosomal protein eS30 × 1 40S ribosomal protein S26 × 1 （Q5ZM66） Small ribosomal subunit protein eS6 × 1 （P47838） 40S ribosomal protein S7 × 1 （F1NN16） 40S ribosomal protein S8 × 1 （F1NB02） 40S ribosomal protein S9 × 1 （B7NZS8） 40S ribosomal protein S11 × 1 （Q98TH5） Small ribosomal subunit protein uS15 × 1 （Q6ITC7） Ribosomal protein S14 × 1 （Q5ZHW8） 40S ribosomal protein S20 × 1 （F1NH93） Small ribosomal subunit protein eS21 × 1 40S ribosomal protein S15a × 1 （A0A3Q3A7P6） Small ribosomal subunit protein uS12 × 1 40S ribosomal protein S24 × 1 （F1NF89） Ribosomal protein S16 × 1 （R4GGJ0） Ubiquitin × 1 （P79781） Ribosomal protein S5 × 1 （G1TFM5） Small ribosomal subunit protein RACK1 × 1 （P63247） 40S ribosomal protein S29 × 1 （A0A8V0Z8V3） Ribosomal protein S10 × 1 （E1C4N0） Small ribosomal subunit protein eS12 × 1 （P84175） Small ribosomal subunit protein uS19 × 1 （P62846） 40S ribosomal protein S18 × 1 （G1TPG3） 40S ribosomal protein S19 × 1 40S ribosomal protein S25 × 1 （A0A8V1A7V4） DNA-(apurinic or apyrimidinic site) lyase × 1 （F1NPA9） Phe tRNA × 1 Small ribosomal subunit protein eS17 × 1 （P08636） MG MAGNESIUM ION × 494 ZN ZINC ION × 7 ELECTRON MICROSCOPY cryo-EM buffer：pH 7.5 cryo-EM vitrification conditions：Cryogen ETHANE Resolution 2.50 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

Other PDB Difference from Current Entry 8Q7Z Assembly / Oligomeric State Construct Mutations and Modifications Ligands, Ions and Non-polymers Method and Experimental Conditions Structure Quality
8Q87 Structure of the G. gallus 80S rotated ribosome in complex with eEF2 and SERBP1 Deposited 2023-08-18 Different oligomeric state Different ligand/ion Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 80 PDB declaration: 85-meric
Chain AZ 2–296（295 aa）
Non-standard monomer：Yes (specific site not provided by mmCIF) MG MAGNESIUM ION × 492 ZN ZINC ION × 8 GDP GUANOSINE-5'-DIPHOSPHATE × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 2.40 Å

1 other PDB entries and 1 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name RSSA_CHICK
Isoform —
PDB entities 66
Chains and sequence ranges Author chain AZ； PDBConstruct 2–296； UniProt 2–296

Ribosomal protein S16

OrganismNot specified

UniProt R4GGJ0

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein–RNA Heteromer Protein × 75 RNA 5 PDB declaration: 80-meric（80） Consistent with all polymer counts Chain Ap； UniProt 1–146 Not recorded 28S rRNA × 1 5.8S rRNA × 1 5S rRNA × 1 60S ribosomal protein L41 × 1 （A0A087WNH4） 60S ribosomal protein L8 × 1 （F1NIX0） Ribosomal protein uL3 × 1 （Q5ZJZ2） 60S ribosomal protein L4 C-terminal domain-containing protein × 1 （Q5ZII1） Large ribosomal subunit protein uL18 × 1 （P22451） 60S ribosomal protein L6 × 1 （Q8UWG7） Large ribosomal subunit protein uL30 × 1 （Q5ZJ56） Large ribosomal subunit protein eL8 × 1 （P32429） 60S ribosomal protein L9 × 1 （A0A1D5NVI1） Large ribosomal subunit protein uL16 × 1 （Q08200） 60S ribosomal protein L11 × 1 （A0A1D5P3B1） Large ribosomal subunit protein eL13 × 1 （P41125） 60S ribosomal protein L14 × 1 （Q98TF9） Ribosomal protein L15 × 1 （F1NQG5） Ribosomal protein uL13 × 1 60S ribosomal protein L17 × 1 （A0A1D5PR40） Ribosomal protein L18 × 1 Ribosomal protein L19 × 1 （Q5ZKK8） 60S ribosomal protein L18a × 1 60S ribosomal protein L21 × 1 （R4GIQ2） Large ribosomal subunit protein eL22 × 1 （Q98TF8） Large ribosomal subunit protein uL14 × 1 Ribosomal protein L24 × 1 （A0A8V0XRE7） Ribosomal protein uL23 × 1 Ribosomal protein L26 like 1 × 1 （F2Z4K6） Large ribosomal subunit protein eL27 × 1 （P61355） Ribosomal protein uL15 × 1 60S ribosomal protein L29 × 1 （A0A1L1RNZ2） Large ribosomal subunit protein eL30 × 1 （P67883） 60S ribosomal protein L31 × 1 （A0A1L1RT94） Ribosomal protein L32 × 1 （E1BVB1） 60S ribosomal protein L35a × 1 （A0A8V0YS49） 60S ribosomal protein L34 × 1 （A0A1L1S0X5） Large ribosomal subunit protein uL29 × 1 （Q98TF7） Large ribosomal subunit protein eL36 × 1 （Q98TF6） Ribosomal protein L37 × 1 （E1C810） 60S ribosomal protein L38 × 1 （E1BU66） Large ribosomal subunit protein eL39 × 1 （Q98TF5） Ubiquitin-60S ribosomal protein L40 × 1 （O42388） Ribosomal protein L36a like × 1 （A0A8V0YUB1） Large ribosomal subunit protein eL43 × 1 （P32046） 60S ribosomal protein L28 × 1 （Q5F346） 18S rRNA × 1 Small ribosomal subunit protein eS1 × 1 40S ribosomal protein S27 × 1 （A0A3Q2TV39） 40S ribosomal protein S28 × 1 （A0A3Q2U825） 40S ribosomal protein S2 × 1 （A0A8V0Z891） Small ribosomal subunit protein eS4 × 1 （P47836） Ribosomal protein eS30 × 1 40S ribosomal protein S26 × 1 （Q5ZM66） Small ribosomal subunit protein eS6 × 1 （P47838） 40S ribosomal protein S7 × 1 （F1NN16） 40S ribosomal protein S8 × 1 （F1NB02） 40S ribosomal protein S9 × 1 （B7NZS8） 40S ribosomal protein S11 × 1 （Q98TH5） Small ribosomal subunit protein uS15 × 1 （Q6ITC7） Ribosomal protein S14 × 1 （Q5ZHW8） 40S ribosomal protein S20 × 1 （F1NH93） Small ribosomal subunit protein eS21 × 1 40S ribosomal protein S15a × 1 （A0A3Q3A7P6） Small ribosomal subunit protein uS12 × 1 40S ribosomal protein S24 × 1 （F1NF89） Small ribosomal subunit protein uS2 × 1 （P50890） Ubiquitin × 1 （P79781） Ribosomal protein S5 × 1 （G1TFM5） Small ribosomal subunit protein RACK1 × 1 （P63247） 40S ribosomal protein S29 × 1 （A0A8V0Z8V3） Ribosomal protein S10 × 1 （E1C4N0） Small ribosomal subunit protein eS12 × 1 （P84175） Small ribosomal subunit protein uS19 × 1 （P62846） 40S ribosomal protein S18 × 1 （G1TPG3） 40S ribosomal protein S19 × 1 40S ribosomal protein S25 × 1 （A0A8V1A7V4） DNA-(apurinic or apyrimidinic site) lyase × 1 （F1NPA9） Phe tRNA × 1 Small ribosomal subunit protein eS17 × 1 （P08636） MG MAGNESIUM ION × 494 ZN ZINC ION × 7 ELECTRON MICROSCOPY cryo-EM buffer：pH 7.5 cryo-EM vitrification conditions：Cryogen ETHANE Resolution 2.50 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

Other PDB Difference from Current Entry 8Q7Z Assembly / Oligomeric State Construct Mutations and Modifications Ligands, Ions and Non-polymers Method and Experimental Conditions Structure Quality
8Q87 Structure of the G. gallus 80S rotated ribosome in complex with eEF2 and SERBP1 Deposited 2023-08-18 Different oligomeric state Different ligand/ion Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 80 PDB declaration: 85-meric
Chain Ap 1–146（146 aa）
Not recorded MG MAGNESIUM ION × 492 ZN ZINC ION × 8 GDP GUANOSINE-5'-DIPHOSPHATE × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 2.40 Å

1 other PDB entries and 1 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name R4GGJ0_CHICK
Isoform —
PDB entities 67
Chains and sequence ranges Author chain Ap； PDBConstruct 1–146； UniProt 1–146

Ubiquitin

OrganismNot specified

UniProt P79781

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein–RNA Heteromer Protein × 75 RNA 5 PDB declaration: 80-meric（80） Consistent with all polymer counts Chain AC； UniProt 1–156 Not recorded 28S rRNA × 1 5.8S rRNA × 1 5S rRNA × 1 60S ribosomal protein L41 × 1 （A0A087WNH4） 60S ribosomal protein L8 × 1 （F1NIX0） Ribosomal protein uL3 × 1 （Q5ZJZ2） 60S ribosomal protein L4 C-terminal domain-containing protein × 1 （Q5ZII1） Large ribosomal subunit protein uL18 × 1 （P22451） 60S ribosomal protein L6 × 1 （Q8UWG7） Large ribosomal subunit protein uL30 × 1 （Q5ZJ56） Large ribosomal subunit protein eL8 × 1 （P32429） 60S ribosomal protein L9 × 1 （A0A1D5NVI1） Large ribosomal subunit protein uL16 × 1 （Q08200） 60S ribosomal protein L11 × 1 （A0A1D5P3B1） Large ribosomal subunit protein eL13 × 1 （P41125） 60S ribosomal protein L14 × 1 （Q98TF9） Ribosomal protein L15 × 1 （F1NQG5） Ribosomal protein uL13 × 1 60S ribosomal protein L17 × 1 （A0A1D5PR40） Ribosomal protein L18 × 1 Ribosomal protein L19 × 1 （Q5ZKK8） 60S ribosomal protein L18a × 1 60S ribosomal protein L21 × 1 （R4GIQ2） Large ribosomal subunit protein eL22 × 1 （Q98TF8） Large ribosomal subunit protein uL14 × 1 Ribosomal protein L24 × 1 （A0A8V0XRE7） Ribosomal protein uL23 × 1 Ribosomal protein L26 like 1 × 1 （F2Z4K6） Large ribosomal subunit protein eL27 × 1 （P61355） Ribosomal protein uL15 × 1 60S ribosomal protein L29 × 1 （A0A1L1RNZ2） Large ribosomal subunit protein eL30 × 1 （P67883） 60S ribosomal protein L31 × 1 （A0A1L1RT94） Ribosomal protein L32 × 1 （E1BVB1） 60S ribosomal protein L35a × 1 （A0A8V0YS49） 60S ribosomal protein L34 × 1 （A0A1L1S0X5） Large ribosomal subunit protein uL29 × 1 （Q98TF7） Large ribosomal subunit protein eL36 × 1 （Q98TF6） Ribosomal protein L37 × 1 （E1C810） 60S ribosomal protein L38 × 1 （E1BU66） Large ribosomal subunit protein eL39 × 1 （Q98TF5） Ubiquitin-60S ribosomal protein L40 × 1 （O42388） Ribosomal protein L36a like × 1 （A0A8V0YUB1） Large ribosomal subunit protein eL43 × 1 （P32046） 60S ribosomal protein L28 × 1 （Q5F346） 18S rRNA × 1 Small ribosomal subunit protein eS1 × 1 40S ribosomal protein S27 × 1 （A0A3Q2TV39） 40S ribosomal protein S28 × 1 （A0A3Q2U825） 40S ribosomal protein S2 × 1 （A0A8V0Z891） Small ribosomal subunit protein eS4 × 1 （P47836） Ribosomal protein eS30 × 1 40S ribosomal protein S26 × 1 （Q5ZM66） Small ribosomal subunit protein eS6 × 1 （P47838） 40S ribosomal protein S7 × 1 （F1NN16） 40S ribosomal protein S8 × 1 （F1NB02） 40S ribosomal protein S9 × 1 （B7NZS8） 40S ribosomal protein S11 × 1 （Q98TH5） Small ribosomal subunit protein uS15 × 1 （Q6ITC7） Ribosomal protein S14 × 1 （Q5ZHW8） 40S ribosomal protein S20 × 1 （F1NH93） Small ribosomal subunit protein eS21 × 1 40S ribosomal protein S15a × 1 （A0A3Q3A7P6） Small ribosomal subunit protein uS12 × 1 40S ribosomal protein S24 × 1 （F1NF89） Small ribosomal subunit protein uS2 × 1 （P50890） Ribosomal protein S16 × 1 （R4GGJ0） Ribosomal protein S5 × 1 （G1TFM5） Small ribosomal subunit protein RACK1 × 1 （P63247） 40S ribosomal protein S29 × 1 （A0A8V0Z8V3） Ribosomal protein S10 × 1 （E1C4N0） Small ribosomal subunit protein eS12 × 1 （P84175） Small ribosomal subunit protein uS19 × 1 （P62846） 40S ribosomal protein S18 × 1 （G1TPG3） 40S ribosomal protein S19 × 1 40S ribosomal protein S25 × 1 （A0A8V1A7V4） DNA-(apurinic or apyrimidinic site) lyase × 1 （F1NPA9） Phe tRNA × 1 Small ribosomal subunit protein eS17 × 1 （P08636） MG MAGNESIUM ION × 494 ZN ZINC ION × 7 ELECTRON MICROSCOPY cryo-EM buffer：pH 7.5 cryo-EM vitrification conditions：Cryogen ETHANE Resolution 2.50 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

Other PDB Difference from Current Entry 8Q7Z Assembly / Oligomeric State Construct Mutations and Modifications Ligands, Ions and Non-polymers Method and Experimental Conditions Structure Quality
6ZVK The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanism Deposited 2020-07-24 Different construct Different oligomeric state Different ligand/ion Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 80 PDB declaration: 85-meric
Chain Q3 83–151（69 aa）
Not recorded ZN ZINC ION × 6 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 3.49 Å
8Q87 Structure of the G. gallus 80S rotated ribosome in complex with eEF2 and SERBP1 Deposited 2023-08-18 Different oligomeric state Different ligand/ion Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 80 PDB declaration: 85-meric
Chain AC 1–156（156 aa）
Not recorded MG MAGNESIUM ION × 492 ZN ZINC ION × 8 GDP GUANOSINE-5'-DIPHOSPHATE × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 2.40 Å

2 other PDB entries and 2 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name RS27A_CHICK
Isoform —
PDB entities 68
Chains and sequence ranges Author chain AC； PDBConstruct 1–156； UniProt 1–156

Ribosomal protein S5

OrganismNot specified

UniProt G1TFM5

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein–RNA Heteromer Protein × 75 RNA 5 PDB declaration: 80-meric（80） Consistent with all polymer counts Chain Ae； UniProt 1–204 Not recorded 28S rRNA × 1 5.8S rRNA × 1 5S rRNA × 1 60S ribosomal protein L41 × 1 （A0A087WNH4） 60S ribosomal protein L8 × 1 （F1NIX0） Ribosomal protein uL3 × 1 （Q5ZJZ2） 60S ribosomal protein L4 C-terminal domain-containing protein × 1 （Q5ZII1） Large ribosomal subunit protein uL18 × 1 （P22451） 60S ribosomal protein L6 × 1 （Q8UWG7） Large ribosomal subunit protein uL30 × 1 （Q5ZJ56） Large ribosomal subunit protein eL8 × 1 （P32429） 60S ribosomal protein L9 × 1 （A0A1D5NVI1） Large ribosomal subunit protein uL16 × 1 （Q08200） 60S ribosomal protein L11 × 1 （A0A1D5P3B1） Large ribosomal subunit protein eL13 × 1 （P41125） 60S ribosomal protein L14 × 1 （Q98TF9） Ribosomal protein L15 × 1 （F1NQG5） Ribosomal protein uL13 × 1 60S ribosomal protein L17 × 1 （A0A1D5PR40） Ribosomal protein L18 × 1 Ribosomal protein L19 × 1 （Q5ZKK8） 60S ribosomal protein L18a × 1 60S ribosomal protein L21 × 1 （R4GIQ2） Large ribosomal subunit protein eL22 × 1 （Q98TF8） Large ribosomal subunit protein uL14 × 1 Ribosomal protein L24 × 1 （A0A8V0XRE7） Ribosomal protein uL23 × 1 Ribosomal protein L26 like 1 × 1 （F2Z4K6） Large ribosomal subunit protein eL27 × 1 （P61355） Ribosomal protein uL15 × 1 60S ribosomal protein L29 × 1 （A0A1L1RNZ2） Large ribosomal subunit protein eL30 × 1 （P67883） 60S ribosomal protein L31 × 1 （A0A1L1RT94） Ribosomal protein L32 × 1 （E1BVB1） 60S ribosomal protein L35a × 1 （A0A8V0YS49） 60S ribosomal protein L34 × 1 （A0A1L1S0X5） Large ribosomal subunit protein uL29 × 1 （Q98TF7） Large ribosomal subunit protein eL36 × 1 （Q98TF6） Ribosomal protein L37 × 1 （E1C810） 60S ribosomal protein L38 × 1 （E1BU66） Large ribosomal subunit protein eL39 × 1 （Q98TF5） Ubiquitin-60S ribosomal protein L40 × 1 （O42388） Ribosomal protein L36a like × 1 （A0A8V0YUB1） Large ribosomal subunit protein eL43 × 1 （P32046） 60S ribosomal protein L28 × 1 （Q5F346） 18S rRNA × 1 Small ribosomal subunit protein eS1 × 1 40S ribosomal protein S27 × 1 （A0A3Q2TV39） 40S ribosomal protein S28 × 1 （A0A3Q2U825） 40S ribosomal protein S2 × 1 （A0A8V0Z891） Small ribosomal subunit protein eS4 × 1 （P47836） Ribosomal protein eS30 × 1 40S ribosomal protein S26 × 1 （Q5ZM66） Small ribosomal subunit protein eS6 × 1 （P47838） 40S ribosomal protein S7 × 1 （F1NN16） 40S ribosomal protein S8 × 1 （F1NB02） 40S ribosomal protein S9 × 1 （B7NZS8） 40S ribosomal protein S11 × 1 （Q98TH5） Small ribosomal subunit protein uS15 × 1 （Q6ITC7） Ribosomal protein S14 × 1 （Q5ZHW8） 40S ribosomal protein S20 × 1 （F1NH93） Small ribosomal subunit protein eS21 × 1 40S ribosomal protein S15a × 1 （A0A3Q3A7P6） Small ribosomal subunit protein uS12 × 1 40S ribosomal protein S24 × 1 （F1NF89） Small ribosomal subunit protein uS2 × 1 （P50890） Ribosomal protein S16 × 1 （R4GGJ0） Ubiquitin × 1 （P79781） Small ribosomal subunit protein RACK1 × 1 （P63247） 40S ribosomal protein S29 × 1 （A0A8V0Z8V3） Ribosomal protein S10 × 1 （E1C4N0） Small ribosomal subunit protein eS12 × 1 （P84175） Small ribosomal subunit protein uS19 × 1 （P62846） 40S ribosomal protein S18 × 1 （G1TPG3） 40S ribosomal protein S19 × 1 40S ribosomal protein S25 × 1 （A0A8V1A7V4） DNA-(apurinic or apyrimidinic site) lyase × 1 （F1NPA9） Phe tRNA × 1 Small ribosomal subunit protein eS17 × 1 （P08636） MG MAGNESIUM ION × 494 ZN ZINC ION × 7 ELECTRON MICROSCOPY cryo-EM buffer：pH 7.5 cryo-EM vitrification conditions：Cryogen ETHANE Resolution 2.50 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

Other PDB Difference from Current Entry 8Q7Z Assembly / Oligomeric State Construct Mutations and Modifications Ligands, Ions and Non-polymers Method and Experimental Conditions Structure Quality
3JAG Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UAA stop codon Deposited 2015-06-10 Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 80 PDB declaration: 87-meric
Chain FF 14–204（191 aa）
Not recorded MG MAGNESIUM ION × 195 ZN ZINC ION × 8 SF4 IRON/SULFUR CLUSTER × 2 ADP ADENOSINE-5'-DIPHOSPHATE × 2 ELECTRON MICROSCOPY
cryo-EM buffer 50 mM HEPES, 100 mM potassium acetate, 5 mM magnesium acetate, 1 mM DTT；pH 7.4；50 mM HEPES, 100 mM potassium acetate, 5 mM magnesium acetate, 1 mM DTT
cryo-EM vitrification conditions After 30 second wait time, blot for 3 seconds before plunging；Cryogen ETHANE；After 30 second wait time, blot for 3 seconds before plunging into liquid ethane (FEI VITROBOT MARK III).
Resolution 3.65 Å
3JAH Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UAG stop codon Deposited 2015-06-10 Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 80 PDB declaration: 87-meric
Chain FF 14–204（191 aa）
Not recorded MG MAGNESIUM ION × 195 ZN ZINC ION × 8 SF4 IRON/SULFUR CLUSTER × 2 ADP ADENOSINE-5'-DIPHOSPHATE × 2 ELECTRON MICROSCOPY
cryo-EM buffer 50 mM HEPES, 100 mM potassium acetate, 5 mM magnesium acetate, 1 mM DTT；pH 7.4；50 mM HEPES, 100 mM potassium acetate, 5 mM magnesium acetate, 1 mM DTT
cryo-EM vitrification conditions After 30 second wait time, blot for 3 seconds before plunging；Cryogen ETHANE；After 30 second wait time, blot for 3 seconds before plunging into liquid ethane (FEI VITROBOT MARK III).
Resolution 3.45 Å
3JAI Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UGA stop codon Deposited 2015-06-10 Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 80 PDB declaration: 87-meric
Chain FF 14–204（191 aa）
Not recorded MG MAGNESIUM ION × 195 ZN ZINC ION × 8 SF4 IRON/SULFUR CLUSTER × 2 ADP ADENOSINE-5'-DIPHOSPHATE × 2 ELECTRON MICROSCOPY
cryo-EM buffer 50 mM HEPES, 100 mM potassium acetate, 5 mM magnesium acetate, 1 mM DTT；pH 7.4；50 mM HEPES, 100 mM potassium acetate, 5 mM magnesium acetate, 1 mM DTT
cryo-EM vitrification conditions After 30 second wait time, blot for 3 seconds before plunging；Cryogen ETHANE；After 30 second wait time, blot for 3 seconds before plunging into liquid ethane (FEI VITROBOT MARK III).
Resolution 3.65 Å
4D5L Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state Deposited 2014-11-05 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 33 PDB declaration: 34-meric
Chain F 1–204（204 aa）
Not recorded No recorded non-water small molecule ELECTRON MICROSCOPY
cryo-EM buffer 20 MM TRIS PH 7.5, 100 MM KCL, 1 MM DTT, 2.5 MM MGCL2, 0.5 MM GTP；pH 7.5；20 MM TRIS PH 7.5, 100 MM KCL, 1 MM DTT, 2.5 MM MGCL2, 0.5 MM GTP
cryo-EM vitrification conditions Cryogen ETHANE；LIQUID ETHANE
Resolution 9.00 Å
4KZX Rabbit 40S ribosomal subunit in complex with eIF1. Deposited 2013-05-30 Different oligomeric state Different ligand/ion Different experimental method Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 34 PDB declaration: 35-meric
Chain F 1–204（204 aa）
Not recorded No recorded non-water small molecule X-RAY DIFFRACTION
X-ray crystallization conditions VAPOR DIFFUSION；pH 8.5；292 K；0.1M Ammonium acetate, 0.05M Tris-HCl pH 8.5, 2.5% PEG-20K, 4-6% MPD, 5.0mM Mg acetate, 2.0mM TCEP, vapor diffusion, temperature 292K
Resolution 7.81 Å R-free 0.347
4KZY Rabbit 40S ribosomal subunit in complex with eIF1 and eIF1A. Deposited 2013-05-30 Different oligomeric state Different ligand/ion Different experimental method Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 35 PDB declaration: 36-meric
Chain F 1–204（204 aa）
Not recorded No recorded non-water small molecule X-RAY DIFFRACTION
X-ray crystallization conditions VAPOR DIFFUSION；pH 8.5；292 K；0.1M Ammonium acetate, 0.05M Tris-HCl pH 8.5, 2.5% PEG-20K, 4-6% MPD, 5.0mM Mg acetate, 2.0mM TCEP, vapor diffusion, temperature 292K
Resolution 7.01 Å R-free 0.348
4KZZ Rabbit 40S ribosomal subunit in complex with mRNA, initiator tRNA and eIF1A Deposited 2013-05-30 Different oligomeric state Different ligand/ion Different experimental method Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 34 PDB declaration: 37-meric
Chain F 1–204（204 aa）
Not recorded No recorded non-water small molecule X-RAY DIFFRACTION
X-ray crystallization conditions VAPOR DIFFUSION；pH 8.5；292 K；0.1M Ammonium acetate, 0.05M Tris-HCl pH 8.5, 2.5% PEG-20K, 4-6% MPD, 5.0mM Mg acetate, 2.0mM TCEP, vapor diffusion, temperature 292K
Resolution 7.03 Å R-free 0.359
5K0Y m48S late-stage initiation complex, purified from rabbit reticulocytes lysates, displaying eIF2 ternary complex and eIF3 i and g subunits relocated to the intersubunit face Deposited 2016-05-17 Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 39 PDB declaration: 42-meric
Chain U 14–204（191 aa）
Not recorded No recorded non-water small molecule ELECTRON MICROSCOPY
cryo-EM buffer pH 7.6
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 5.80 Å
5LZS Structure of the mammalian ribosomal elongation complex with aminoacyl-tRNA, eEF1A, and didemnin B Deposited 2016-10-02 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 78 PDB declaration: 86-meric
Chain FF 1–204（204 aa）
Not recorded MG MAGNESIUM ION × 276 ZN ZINC ION × 8 GDP GUANOSINE-5'-DIPHOSPHATE × 1 7C4 (2~{S})-~{N}-[(2~{R})-1-[[(3~{S},6~{S},8~{S},12~{S},13~{R},16~{S},17~{R},20~{S},23~{S})-13-[(2~{S})-butan-2-yl]-20-[(4-methoxyphenyl)methyl]-6,17,21-trimethyl-3-(2-methylpropyl)-12-oxidanyl-2,5,7,10,15,19,22-heptakis(oxidanylidene)-8-propan-2-yl-9,18-dioxa-1,4,14,21-tetrazabicyclo[21.3.0]hexacosan-16-yl]amino]-4-methyl-1-oxidanylidene-pentan-2-yl]-~{N}-methyl-1-[(2~{S})-2-oxidanylpropanoyl]pyrrolidine-2-carboxamide × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.4
cryo-EM vitrification conditions Cryogen ETHANE；3 ul aliquots were applied to the grid and incubated for 30 s, before blotting for 3s to remove excess solution.
Resolution 3.31 Å
5LZT Structure of the mammalian ribosomal termination complex with eRF1 and eRF3. Deposited 2016-10-02 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 80 PDB declaration: 87-meric
Chain FF 1–204（204 aa）
Not recorded MG MAGNESIUM ION × 282 ZN ZINC ION × 8 GCP PHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTER × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.4
cryo-EM vitrification conditions Cryogen ETHANE；3 ul aliquots were applied to the grid and incubated for 30 s, before blotting for 3s to remove excess solution.
Resolution 3.65 Å
5LZU Structure of the mammalian ribosomal termination complex with accommodated eRF1 Deposited 2016-10-02 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 78 PDB declaration: 85-meric
Chain FF 1–204（204 aa）
Not recorded MG MAGNESIUM ION × 258 ZN ZINC ION × 8 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.4
cryo-EM vitrification conditions Cryogen ETHANE；3 ul aliquots were applied to the grid and incubated for 30 s, before blotting for 3s to remove excess solution.
Resolution 3.75 Å
5LZV Structure of the mammalian ribosomal termination complex with accommodated eRF1(AAQ) and ABCE1. Deposited 2016-10-02 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 80 PDB declaration: 87-meric
Chain FF 1–204（204 aa）
Not recorded MG MAGNESIUM ION × 300 ZN ZINC ION × 8 SF4 IRON/SULFUR CLUSTER × 2 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.4
cryo-EM vitrification conditions Cryogen ETHANE；3 ul aliquots were applied to the grid and incubated for 30 s, before blotting for 3s to remove excess solution.
Resolution 3.35 Å
5LZW Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a truncated mRNA. Deposited 2016-10-02 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 80 PDB declaration: 87-meric
Chain FF 1–204（204 aa）
Not recorded MG MAGNESIUM ION × 281 ZN ZINC ION × 8 GCP PHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTER × 2 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.4
cryo-EM vitrification conditions Cryogen ETHANE；3 ul aliquots were applied to the grid and incubated for 30 s, before blotting for 3s to remove excess solution.
Resolution 3.53 Å
5LZX Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a UGA stop codon. Deposited 2016-10-02 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 80 PDB declaration: 87-meric
Chain FF 1–204（204 aa）
Not recorded MG MAGNESIUM ION × 264 ZN ZINC ION × 8 GCP PHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTER × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.4
cryo-EM vitrification conditions Cryogen ETHANE；3 ul aliquots were applied to the grid and incubated for 30 s, before blotting for 3s to remove excess solution.
Resolution 3.67 Å
5LZY Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a polyadenylated mRNA. Deposited 2016-10-02 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 79 PDB declaration: 86-meric
Chain FF 1–204（204 aa）
Not recorded MG MAGNESIUM ION × 236 ZN ZINC ION × 8 GCP PHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTER × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.4
cryo-EM vitrification conditions Cryogen ETHANE；3 ul aliquots were applied to the grid and incubated for 30 s, before blotting for 3s to remove excess solution.
Resolution 3.99 Å
5LZZ Structure of the mammalian rescue complex with Pelota and Hbs1l (combined) Deposited 2016-10-02 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 80 PDB declaration: 87-meric
Chain FF 1–204（204 aa）
Not recorded MG MAGNESIUM ION × 264 ZN ZINC ION × 8 GCP PHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTER × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.4
cryo-EM vitrification conditions Cryogen ETHANE；3 ul aliquots were applied to the grid and incubated for 30 s, before blotting for 3s to remove excess solution.
Resolution 3.47 Å
6D90 Mammalian 80S ribosome with a double translocated CrPV-IRES, P-site tRNA and eRF1. Deposited 2018-04-27 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 79 PDB declaration: 85-meric
Chain GG 1–204（204 aa）
Not recorded No recorded non-water small molecule ELECTRON MICROSCOPY
cryo-EM buffer pH 7.4
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 3.20 Å
6D9J Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1. Deposited 2018-04-30 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 79 PDB declaration: 85-meric
Chain GG 1–204（204 aa）
Not recorded ZN ZINC ION × 4 MG MAGNESIUM ION × 2 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.4
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 3.20 Å
6GZ3 tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-1 (TI-POST-1) Deposited 2018-07-03 Different construct Different oligomeric state Different ligand/ion Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 79 PDB declaration: 86-meric
Chain BF 15–204（190 aa）
Not recorded MG MAGNESIUM ION × 327 ZN ZINC ION × 5 GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 3.60 Å
6HCF Structure of the rabbit 80S ribosome stalled on globin mRNA at the stop codon Deposited 2018-08-14 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 81 PDB declaration: 87-meric
Chain G1 1–204（204 aa）
Not recorded MG MAGNESIUM ION × 300 ZN ZINC ION × 8 SF4 IRON/SULFUR CLUSTER × 2 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.4
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 3.90 Å
6HCJ Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs Deposited 2018-08-15 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 78 PDB declaration: 85-meric
Chain G2 1–204（204 aa）
Not recorded MG MAGNESIUM ION × 300 ZN ZINC ION × 8 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.4
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 3.80 Å
6HCM Structure of the rabbit collided di-ribosome (stalled monosome) Deposited 2018-08-15 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 81 PDB declaration: 87-meric
Chain G1 1–204（204 aa）
Not recorded MG MAGNESIUM ION × 300 ZN ZINC ION × 8 SF4 IRON/SULFUR CLUSTER × 2 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.4
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 6.80 Å
6HCQ Structure of the rabbit collided di-ribosome (collided monosome) Deposited 2018-08-16 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 78 PDB declaration: 85-meric
Chain G2 1–204（204 aa）
Not recorded MG MAGNESIUM ION × 300 ZN ZINC ION × 8 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.4
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 6.50 Å
6MTB Rabbit 80S ribosome with P- and Z-site tRNAs (unrotated state) Deposited 2018-10-19 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 76 PDB declaration: 83-meric
Chain FF 1–204（204 aa）
Not recorded MG MAGNESIUM ION × 297 ZN ZINC ION × 8 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.4
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 3.60 Å
6MTC Rabbit 80S ribosome with Z-site tRNA and IFRD2 (unrotated state) Deposited 2018-10-19 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 77 PDB declaration: 82-meric
Chain FF 1–204（204 aa）
Not recorded MG MAGNESIUM ION × 297 ZN ZINC ION × 8 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.4
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 3.40 Å
6MTD Rabbit 80S ribosome with eEF2 and SERBP1 (unrotated state with 40S head swivel) Deposited 2018-10-19 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 80 PDB declaration: 84-meric
Chain FF 1–204（204 aa）
Not recorded MG MAGNESIUM ION × 297 ZN ZINC ION × 8 GDP GUANOSINE-5'-DIPHOSPHATE × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.4
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 3.30 Å
6MTE Rabbit 80S ribosome with eEF2 and SERBP1 (rotated state) Deposited 2018-10-19 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 79 PDB declaration: 83-meric
Chain FF 1–204（204 aa）
Not recorded MG MAGNESIUM ION × 298 ZN ZINC ION × 8 GDP GUANOSINE-5'-DIPHOSPHATE × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.4
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 3.40 Å
6P4G Structure of a mammalian small ribosomal subunit in complex with the Israeli Acute Paralysis Virus IRES (Class 1) Deposited 2019-05-27 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 34 PDB declaration: 36-meric
Chain G 1–204（204 aa）
Not recorded No recorded non-water small molecule ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE；Blot force = 3s Wait time = 15s Drain time = 0s Blot time = 2.5 to 3 s
cryo-EM vitrification conditions Cryogen ETHANE；Blot force = 3s Wait time = 15s Drain time = 0s Blot time = 2.5 to 3 s
Resolution 3.10 Å
6P4H Structure of a mammalian small ribosomal subunit in complex with the Israeli Acute Paralysis Virus IRES (Class 2) Deposited 2019-05-27 Different oligomeric state Different ligand/ion Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 34 PDB declaration: 36-meric
Chain G 1–204（204 aa）
Not recorded No recorded non-water small molecule ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 3.20 Å
6P5I Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 1) Deposited 2019-05-30 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 76 PDB declaration: 81-meric
Chain G 1–204（204 aa）
Not recorded No recorded non-water small molecule ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE；Blot force = 3s Wait time = 15s Drain time = 0s Blot time = 2.5 to 3 s
Resolution 3.10 Å
6P5J Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 2) Deposited 2019-05-30 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 76 PDB declaration: 81-meric
Chain G 1–204（204 aa）
Not recorded No recorded non-water small molecule ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE；Blot force = 3s Wait time = 15s Drain time = 0s Blot time = 2.5 to 3 s
Resolution 3.10 Å
6P5K Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 3) Deposited 2019-05-30 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 76 PDB declaration: 81-meric
Chain G 1–204（204 aa）
Not recorded No recorded non-water small molecule ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE；Blot force = 3s Wait time = 15s Drain time = 0s Blot time = 2.5 to 3 s
Resolution 3.10 Å
6P5N Structure of a mammalian 80S ribosome in complex with a single translocated Israeli Acute Paralysis Virus IRES and eRF1 Deposited 2019-05-30 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 77 PDB declaration: 82-meric
Chain G 1–204（204 aa）
Not recorded No recorded non-water small molecule ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE；Blot force = 3s Wait time = 15s Drain time = 0s Blot time = 2.5s
Resolution 3.20 Å
6R5Q Structure of XBP1u-paused ribosome nascent chain complex (post-state) Deposited 2019-03-25 Different construct Different oligomeric state Different ligand/ion Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 78 PDB declaration: 85-meric
Chain y 14–204（191 aa）
Not recorded MG MAGNESIUM ION × 299 ZN ZINC ION × 6 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 3.00 Å
6R6G Structure of XBP1u-paused ribosome nascent chain complex with SRP. Deposited 2019-03-27 Different construct Different oligomeric state Different ligand/ion Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 84 PDB declaration: 92-meric
Chain y 14–204（191 aa）
Not recorded MG MAGNESIUM ION × 299 ZN ZINC ION × 5 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 3.70 Å
6R6P Structure of XBP1u-paused ribosome nascent chain complex (rotated state) Deposited 2019-03-27 Different construct Different oligomeric state Different ligand/ion Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 78 PDB declaration: 85-meric
Chain BB 14–204（191 aa）
Not recorded MG MAGNESIUM ION × 159 ZN ZINC ION × 5 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 3.10 Å
6R7Q Structure of XBP1u-paused ribosome nascent chain complex with Sec61. Deposited 2019-03-29 Different construct Different oligomeric state Different ligand/ion Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 81 PDB declaration: 88-meric
Chain y 14–204（191 aa）
Not recorded ZN ZINC ION × 6 MG MAGNESIUM ION × 299 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 3.90 Å
6SGC Rabbit 80S ribosome stalled on a poly(A) tail Deposited 2019-08-03 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 79 PDB declaration: 86-meric
Chain G1 1–204（204 aa）
Not recorded MG MAGNESIUM ION × 275 ZN ZINC ION × 8 SPD SPERMIDINE × 2 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.4
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 2.80 Å
6W2S Structure of the Cricket Paralysis Virus 5-UTR IRES (CrPV 5-UTR-IRES) bound to the small ribosomal subunit in the open state (Class 1) Deposited 2020-03-08 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 41 PDB declaration: 43-meric
Chain G 1–204（204 aa）
Not recorded MG MAGNESIUM ION × 1 ZN ZINC ION × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE；Grids were blotted for 2.5s and flash cooled in liquid ethane
Resolution 3.47 Å
6W2T Structure of the Cricket Paralysis Virus 5-UTR IRES (CrPV 5-UTR-IRES) bound to the small ribosomal subunit in the closed state (Class 2) Deposited 2020-03-08 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 42 PDB declaration: 44-meric
Chain G 1–204（204 aa）
Not recorded MG MAGNESIUM ION × 1 ZN ZINC ION × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE；Grids were blotted for 2.5s and flash cooled in liquid ethane
Resolution 3.36 Å
6YAN Mammalian 48S late-stage translation initiation complex with histone 4 mRNA Deposited 2020-03-12 Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 36 PDB declaration: 39-meric
Chain H 14–204（191 aa）
Not recorded No recorded non-water small molecule ELECTRON MICROSCOPY
cryo-EM buffer pH 7.4
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 3.48 Å
7JQB SARS-CoV-2 Nsp1 and rabbit 40S ribosome complex Deposited 2020-08-10 Different oligomeric state Different ligand/ion Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 33 PDB declaration: 34-meric
Chain G 1–204（204 aa）
Not recorded No recorded non-water small molecule ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 2.70 Å
7JQC SARS-CoV-2 Nsp1, CrPV IRES and rabbit 40S ribosome complex Deposited 2020-08-10 Different oligomeric state Different ligand/ion Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 33 PDB declaration: 35-meric
Chain G 1–204（204 aa）
Not recorded No recorded non-water small molecule ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 3.30 Å
7MDZ 80S rabbit ribosome stalled with benzamide-CHX Deposited 2021-04-06 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 75 PDB declaration: 81-meric
Chain FF 1–204（204 aa）
Not recorded MG MAGNESIUM ION × 277 ZN ZINC ION × 8 Z2V N-[(1R,3S,4R,5S)-3-{(1R)-2-[(2R,4r,6S)-2,6-dihydroxypiperidin-4-yl]-1-hydroxyethyl}-4-hydroxy-1,5-dimethylcyclohexyl]benzamide × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.4
cryo-EM vitrification conditions Cryogen ETHANE；3 sec blot
Resolution 3.20 Å
7NWG Mammalian pre-termination 80S ribosome with Hybrid P/E- and A/P-site tRNA's bound by Blasticidin S. Deposited 2021-03-16 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 79 PDB declaration: 86-meric
Chain G2 1–204（204 aa）
Not recorded MG MAGNESIUM ION × 299 BLS BLASTICIDIN S × 1 ZN ZINC ION × 8 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.4；50 mM HEPES pH 7.4 100 mM KOAc 5 mM Mg(Oac)2 1mM DTT
cryo-EM vitrification conditions Cryogen ETHANE；30s sample incubation on grid followed by 1.1s blotting time.
Resolution 3.80 Å
7NWH Mammalian pre-termination 80S ribosome with eRF1 and eRF3 bound by Blasticidin S. Deposited 2021-03-16 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 79 PDB declaration: 84-meric
Chain FF 1–204（204 aa）
Not recorded ZN ZINC ION × 8 MG MAGNESIUM ION × 281 GCP PHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTER × 1 BLS BLASTICIDIN S × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.4；50 mM HEPES pH 7.4 100 mM KOAc 5 mM Mg(Oac)2 1mM DTT
cryo-EM vitrification conditions Cryogen ETHANE；30s sample incubation on grid followed by 1.1s blotting time.
Resolution 4.10 Å
7NWI Mammalian pre-termination 80S ribosome with Empty-A site bound by Blasticidin S Deposited 2021-03-16 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 78 PDB declaration: 84-meric
Chain FF 1–204（204 aa）
Not recorded MG MAGNESIUM ION × 210 ZN ZINC ION × 5 BLS BLASTICIDIN S × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.4；50 mM HEPES pH 7.4 100 mM KOAc 5 mM Mg(Oac)2 1mM DTT
cryo-EM vitrification conditions Cryogen ETHANE；30s sample incubation on grid followed by 1.1s blotting time.
Resolution 3.13 Å
7O7Y Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (high resolution) Deposited 2021-04-14 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 79 PDB declaration: 86-meric
Chain Ae 1–204（204 aa）
Not recorded SPD SPERMIDINE × 30 SPM SPERMINE × 3 MG MAGNESIUM ION × 420 UNX UNKNOWN LIGAND × 330 ZN ZINC ION × 8 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.4
cryo-EM vitrification conditions Cryogen ETHANE-PROPANE
Resolution 2.20 Å
7O7Z Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (classified for pseudoknot) Deposited 2021-04-14 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 79 PDB declaration: 86-meric
Chain Ae 1–204（204 aa）
Not recorded SPD SPERMIDINE × 30 SPM SPERMINE × 3 MG MAGNESIUM ION × 420 UNX UNKNOWN LIGAND × 329 ZN ZINC ION × 8 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.4
cryo-EM vitrification conditions Cryogen ETHANE-PROPANE
Resolution 2.40 Å
7O80 Rabbit 80S ribosome in complex with eRF1 and ABCE1 stalled at the STOP codon in the mutated SARS-CoV-2 slippery site Deposited 2021-04-14 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 81 PDB declaration: 88-meric
Chain Ae 1–204（204 aa）
Not recorded SPD SPERMIDINE × 1 MG MAGNESIUM ION × 355 UNX UNKNOWN LIGAND × 374 ZN ZINC ION × 8 GTP GUANOSINE-5'-TRIPHOSPHATE × 1 SF4 IRON/SULFUR CLUSTER × 2 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.4
cryo-EM vitrification conditions Cryogen ETHANE-PROPANE
Resolution 2.90 Å
7O81 Rabbit 80S ribosome colliding in another ribosome stalled by the SARS-CoV-2 pseudoknot Deposited 2021-04-14 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 80 PDB declaration: 87-meric
Chain Ae 1–204（204 aa）
Not recorded MG MAGNESIUM ION × 349 UNX UNKNOWN LIGAND × 266 ZN ZINC ION × 8 SPD SPERMIDINE × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.4
cryo-EM vitrification conditions Cryogen ETHANE-PROPANE
Resolution 3.10 Å
7OYD Cryo-EM structure of a rabbit 80S ribosome with zebrafish Dap1b Deposited 2021-06-24 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 79 PDB declaration: 83-meric
Chain FF 1–204（204 aa）
Not recorded MG MAGNESIUM ION × 201 ZN ZINC ION × 7 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.6
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 2.30 Å
7SYG Structure of the HCV IRES binding to the 40S ribosomal subunit, closed conformation. Structure 1(delta dII) Deposited 2021-11-25 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 34 PDB declaration: 36-meric
Chain G 1–204（204 aa）
Not recorded ZN ZINC ION × 2 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE-PROPANE；4 second blot time, force 3
Resolution 4.30 Å
7SYH Structure of the HCV IRES binding to the 40S ribosomal subunit, closed conformation. Structure 2(delta dII) Deposited 2021-11-25 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 34 PDB declaration: 36-meric
Chain G 1–204（204 aa）
Not recorded ZN ZINC ION × 2 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE-PROPANE；4 second blot time, force 3
Resolution 4.60 Å
7SYI Structure of the HCV IRES binding to the 40S ribosomal subunit, closed conformation. Structure 3(delta dII) Deposited 2021-11-25 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 34 PDB declaration: 36-meric
Chain G 1–204（204 aa）
Not recorded ZN ZINC ION × 2 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE-PROPANE；4 second blot time, force 3
Resolution 4.50 Å
7SYJ Structure of the HCV IRES binding to the 40S ribosomal subunit, closed conformation. Structure 4(delta dII) Deposited 2021-11-25 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 34 PDB declaration: 36-meric
Chain G 1–204（204 aa）
Not recorded ZN ZINC ION × 2 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE-PROPANE；4 second blot time, force 3
Resolution 4.80 Å
7SYK Structure of the HCV IRES binding to the 40S ribosomal subunit, closed conformation. Structure 5(delta dII) Deposited 2021-11-25 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 34 PDB declaration: 36-meric
Chain G 1–204（204 aa）
Not recorded ZN ZINC ION × 2 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE-PROPANE；4 second blot time, force 3
Resolution 4.20 Å
7SYL Structure of the HCV IRES bound to the 40S ribosomal subunit, closed conformation. Structure 6(delta dII) Deposited 2021-11-25 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 34 PDB declaration: 36-meric
Chain G 1–204（204 aa）
Not recorded ZN ZINC ION × 2 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE-PROPANE；4 second blot time, force 3
Resolution 4.50 Å
7SYM Structure of the HCV IRES bound to the 40S ribosomal subunit, head opening. Structure 7(delta dII) Deposited 2021-11-25 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 34 PDB declaration: 36-meric
Chain G 1–204（204 aa）
Not recorded ZN ZINC ION × 2 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE-PROPANE；4 second blot time, force 3
Resolution 4.80 Å
7SYN Structure of the HCV IRES bound to the 40S ribosomal subunit, head opening. Structure 8(delta dII) Deposited 2021-11-25 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 34 PDB declaration: 36-meric
Chain G 1–204（204 aa）
Not recorded ZN ZINC ION × 2 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE-PROPANE；4 second blot time, force 3
Resolution 4.00 Å
7SYO Structure of the HCV IRES bound to the 40S ribosomal subunit, head open. Structure 9(delta dII) Deposited 2021-11-25 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 34 PDB declaration: 36-meric
Chain G 1–204（204 aa）
Not recorded ZN ZINC ION × 2 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE-PROPANE；4 second blot time, force 3
Resolution 4.60 Å
7SYP Structure of the wt IRES and 40S ribosome binary complex, open conformation. Structure 10(wt) Deposited 2021-11-25 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 34 PDB declaration: 37-meric
Chain G 1–204（204 aa）
Not recorded ZN ZINC ION × 2 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE-PROPANE；4 second blot time, force 3
Resolution 4.00 Å
7SYQ Structure of the wt IRES and 40S ribosome ternary complex, open conformation. Structure 11(wt) Deposited 2021-11-25 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 35 PDB declaration: 37-meric
Chain G 1–204（204 aa）
Not recorded ZN ZINC ION × 2 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE-PROPANE；4 second blot time, force 3
Resolution 3.80 Å
7SYR Structure of the wt IRES eIF2-containing 48S initiation complex, closed conformation. Structure 12(wt). Deposited 2021-11-25 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 36 PDB declaration: 39-meric
Chain G 1–204（204 aa）
Not recorded ZN ZINC ION × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE-PROPANE；4 second blot time, force 3
Resolution 3.60 Å
7SYS Structure of the delta dII IRES eIF2-containing 48S initiation complex, closed conformation. Structure 12(delta dII). Deposited 2021-11-25 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 36 PDB declaration: 39-meric
Chain G 1–204（204 aa）
Not recorded ZN ZINC ION × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE-PROPANE；4 second blot time, force 3
Resolution 3.50 Å
7SYT Structure of the wt IRES w/o eIF2 48S initiation complex, closed conformation. Structure 13(wt) Deposited 2021-11-25 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 34 PDB declaration: 37-meric
Chain G 1–204（204 aa）
Not recorded ZN ZINC ION × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE-PROPANE；4 second blot time, force 3
Resolution 4.40 Å
7SYU Structure of the delta dII IRES w/o eIF2 48S initiation complex, closed conformation. Structure 13(delta dII) Deposited 2021-11-25 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 34 PDB declaration: 37-meric
Chain G 1–204（204 aa）
Not recorded ZN ZINC ION × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE-PROPANE；4 second blot time, force 3
Resolution 4.60 Å
7SYV Structure of the wt IRES eIF5B-containing pre-48S initiation complex, open conformation. Structure 14(wt) Deposited 2021-11-25 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 36 PDB declaration: 39-meric
Chain G 1–204（204 aa）
Not recorded ZN ZINC ION × 2 GTP GUANOSINE-5'-TRIPHOSPHATE × 1 MG MAGNESIUM ION × 1 NA SODIUM ION × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE-PROPANE；4 second blot time, force 3
Resolution 3.90 Å
7SYW Structure of the wt IRES eIF5B-containing 48S initiation complex, closed conformation. Structure 15(wt) Deposited 2021-11-25 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 36 PDB declaration: 39-meric
Chain G 1–204（204 aa）
Not recorded ZN ZINC ION × 1 GTP GUANOSINE-5'-TRIPHOSPHATE × 1 MG MAGNESIUM ION × 1 NA SODIUM ION × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE-PROPANE；4 second blot time, force 3
Resolution 3.70 Å
7SYX Structure of the delta dII IRES eIF5B-containing 48S initiation complex, closed conformation. Structure 15(delta dII) Deposited 2021-11-25 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 36 PDB declaration: 39-meric
Chain G 1–204（204 aa）
Not recorded ZN ZINC ION × 1 MG MAGNESIUM ION × 1 GTP GUANOSINE-5'-TRIPHOSPHATE × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE-PROPANE；4 second blot time, force 3
Resolution 3.70 Å
7TOQ Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein poly-PR Deposited 2022-01-24 Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 78 PDB declaration: 84-meric
Chain AS05 14–204（191 aa）
Not recorded ZN ZINC ION × 4 ELECTRON MICROSCOPY
cryo-EM buffer pH 7
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 3.10 Å
7TOR Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20 Deposited 2022-01-24 Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 79 PDB declaration: 86-meric
Chain AS05 14–204（191 aa）
Not recorded ZN ZINC ION × 6 ELECTRON MICROSCOPY
cryo-EM buffer pH 7
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 2.90 Å
7UCJ Mammalian 80S translation initiation complex with mRNA and Harringtonine Deposited 2022-03-16 Different construct Different oligomeric state Different ligand/ion Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 73 PDB declaration: 79-meric
Chain FF 14–204（191 aa）
Not recorded MG MAGNESIUM ION × 296 MQ6 Harringtonine × 1 ZN ZINC ION × 7 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 3.10 Å
7UCK 80S translation initiation complex with ac4c(-1) mRNA and Harringtonine Deposited 2022-03-16 Different construct Different oligomeric state Different ligand/ion Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 73 PDB declaration: 79-meric
Chain FF 14–204（191 aa）
Not recorded MG MAGNESIUM ION × 297 MQ6 Harringtonine × 1 ZN ZINC ION × 7 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 2.80 Å
8BHF Cryo-EM structure of stalled rabbit 80S ribosomes in complex with human CCR4-NOT and CNOT4 Deposited 2022-10-31 Different construct Different oligomeric state Different ligand/ion Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 80 PDB declaration: 86-meric
Chain G3 14–204（191 aa）
Not recorded MG MAGNESIUM ION × 275 ZN ZINC ION × 7 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 3.10 Å
8BTK Structure of the TRAP complex with the Sec translocon and a translating ribosome Deposited 2022-11-29 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Insufficient information Heteromer；Protein × 86 PDB declaration: 92-meric
Chain Ae 1–204（204 aa）
Not recorded SPD SPERMIDINE × 30 SPM SPERMINE × 3 MG MAGNESIUM ION × 750 GTP GUANOSINE-5'-TRIPHOSPHATE × 1 AAC ACETYLAMINO-ACETIC ACID × 1 ZN ZINC ION × 8 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE-PROPANE；3.5 uL of sample was incubated on the grid for 60 seconds at 4*C and 100% humidity before being blotted and plunged into liquid ethane/propane mix cooled to liquid nitrogen temperature
Resolution 3.50 Å
8P2K Ternary complex of translating ribosome, NAC and METAP1 Deposited 2023-05-16 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 82 PDB declaration: 88-meric
Chain Ae 1–204（204 aa）
Not recorded N ANY 5'-MONOPHOSPHATE NUCLEOTIDE × 73 SPD SPERMIDINE × 30 SPM SPERMINE × 3 MG MAGNESIUM ION × 420 UNX UNKNOWN LIGAND × 312 GTP GUANOSINE-5'-TRIPHOSPHATE × 1 AAC ACETYLAMINO-ACETIC ACID × 1 ZN ZINC ION × 8 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.6
cryo-EM vitrification conditions Cryogen ETHANE-PROPANE
Resolution 2.90 Å
8Q87 Structure of the G. gallus 80S rotated ribosome in complex with eEF2 and SERBP1 Deposited 2023-08-18 Different oligomeric state Different ligand/ion Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 80 PDB declaration: 85-meric
Chain Ae 1–204（204 aa）
Not recorded MG MAGNESIUM ION × 492 ZN ZINC ION × 8 GDP GUANOSINE-5'-DIPHOSPHATE × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 2.40 Å
8SCB Terminating ribosome with SRI-41315 Deposited 2023-04-05 Different oligomeric state Different ligand/ion Assembly 1 Protein–RNA Heteromer；Protein × 80 PDB declaration: 87-meric
Chain FF 1–204（204 aa）
Not recorded MG MAGNESIUM ION × 312 ZN ZINC ION × 8 ZVM (2S,4aS)-2-cyclobutyl-10-methyl-3-phenyl-2,10-dihydropyrimido[4,5-b]quinoline-4,5(3H,4aH)-dione × 1 SF4 IRON/SULFUR CLUSTER × 2 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 2.50 Å
8SUP Structure of the 48S translation initiation complex assembled on the encephalomyocarditis virus IRES Deposited 2023-05-12 Different oligomeric state Different ligand/ion Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 44 PDB declaration: 47-meric
Chain G 1–204（204 aa）
Not recorded ZN ZINC ION × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 3.10 Å
8VFT Translating 80S rabbit ribosome stalled by emetine with eEF2 Deposited 2023-12-22 Different oligomeric state Different ligand/ion Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 78 PDB declaration: 85-meric
Chain FF 1–204（204 aa）
Not recorded MG MAGNESIUM ION × 276 ZN ZINC ION × 8 GDP GUANOSINE-5'-DIPHOSPHATE × 1 34G emetine × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 3.30 Å
8VVP Codon sampling state obtained from Anisomycin-treated mammalian ribosomes Deposited 2024-01-31 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 80 PDB declaration: 88-meric
Chain FB 1–204（204 aa）
Not recorded MG MAGNESIUM ION × 260 ZN ZINC ION × 8 5GP GUANOSINE-5'-MONOPHOSPHATE × 1 ANM ANISOMYCIN × 1 SPD SPERMIDINE × 6 SPM SPERMINE × 2 K POTASSIUM ION × 1 GTP GUANOSINE-5'-TRIPHOSPHATE × 1 SER SERINE × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5；20 mM HEPES-KOH, pH 7.5, 100 mM KCl, 1.5 mM MgCl2, 0.5 mM Spermidine, 0.04 mM Spermine, 1 mM DTT
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 2.90 Å
8VVQ Codon sampling state of elongation inhibitor-treated mammalian ribosomes obtained from merged datasets Deposited 2024-01-31 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 80 PDB declaration: 88-meric
Chain FB 1–204（204 aa）
Not recorded MG MAGNESIUM ION × 290 ZN ZINC ION × 8 5GP GUANOSINE-5'-MONOPHOSPHATE × 1 ANM ANISOMYCIN × 1 SPD SPERMIDINE × 1 K POTASSIUM ION × 1 GTP GUANOSINE-5'-TRIPHOSPHATE × 1 SER SERINE × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5；20 mM HEPES-KOH, pH 7.5, 100 mM KCl, 1.5 mM MgCl2, 0.5 mM Spermidine, 0.04 mM Spermine, 1 mM DTT
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 2.70 Å
8VVR Post-decoding/Post-hydrolysis state obtained from Anisomycin-treated mammalian ribosomes Deposited 2024-01-31 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 80 PDB declaration: 88-meric
Chain FB 1–204（204 aa）
Not recorded MG MAGNESIUM ION × 204 ZN ZINC ION × 8 5GP GUANOSINE-5'-MONOPHOSPHATE × 1 ANM ANISOMYCIN × 1 SPD SPERMIDINE × 3 K POTASSIUM ION × 1 SER SERINE × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5；20 mM HEPES-KOH, pH 7.5, 100 mM KCl, 1.5 mM MgCl2, 0.5 mM Spermidine, 0.04 mM Spermine, 1 mM DTT
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 3.10 Å
8VVS Post-decoding post-hydrolysis state obtained from merged datasets of elongation inhibitor-treated mammalian ribosomes Deposited 2024-01-31 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 80 PDB declaration: 88-meric
Chain FB 1–204（204 aa）
Not recorded MG MAGNESIUM ION × 236 ZN ZINC ION × 8 5GP GUANOSINE-5'-MONOPHOSPHATE × 1 ANM ANISOMYCIN × 1 SPD SPERMIDINE × 4 K POTASSIUM ION × 1 SER SERINE × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5；20 mM HEPES-KOH, pH 7.5, 100 mM KCl, 1.5 mM MgCl2, 0.5 mM Spermidine, 0.04 mM Spermine, 1 mM DTT
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 3.10 Å
8VVT Mammalian ribosomes bound to Anisomycin in the rotated conformation Deposited 2024-01-31 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 80 PDB declaration: 84-meric
Chain FB 1–204（204 aa）
Not recorded MG MAGNESIUM ION × 144 ANM ANISOMYCIN × 1 SPD SPERMIDINE × 1 ZN ZINC ION × 8 GDP GUANOSINE-5'-DIPHOSPHATE × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5；20 mM HEPES-KOH, pH 7.5, 100 mM KCl, 1.5 mM MgCl2, 0.5 mM Spermidine, 0.04 mM Spermine, 1 mM DTT
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 2.90 Å
8VVU Anisomycin-bound mammalian ribosome with partially accommodated A-site tRNA Deposited 2024-01-31 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 78 PDB declaration: 86-meric
Chain FB 1–204（204 aa）
Not recorded MG MAGNESIUM ION × 102 ZN ZINC ION × 8 ANM ANISOMYCIN × 1 SPD SPERMIDINE × 1 SER SERINE × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5；20 mM HEPES-KOH, pH 7.5, 100 mM KCl, 1.5 mM MgCl2, 0.5 mM Spermidine, 0.04 mM Spermine, 1 mM DTT
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 3.80 Å
8VVV Mammalian ribosomes bound to Anisomycin in the nonrotated conformation Deposited 2024-01-31 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 79 PDB declaration: 83-meric
Chain FF 1–204（204 aa）
Not recorded MG MAGNESIUM ION × 294 ZN ZINC ION × 8 GDP GUANOSINE-5'-DIPHOSPHATE × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5；20 mM HEPES-KOH, pH 7.5, 100 mM KCl, 1.5 mM MgCl2, 0.5 mM Spermidine, 0.04 mM Spermine, 1 mM DTT
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 3.10 Å
9BDL 80S ribosome with angiogenin Deposited 2024-04-12 Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 75 PDB declaration: 82-meric
Chain AS05 14–204（191 aa）
Not recorded No recorded non-water small molecule ELECTRON MICROSCOPY
cryo-EM buffer pH 7
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 2.80 Å
9BDN 80S ribosome with angiogenin and tRNAAla Deposited 2024-04-12 Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 77 PDB declaration: 85-meric
Chain AS05 14–204（191 aa）
Not recorded No recorded non-water small molecule ELECTRON MICROSCOPY
cryo-EM buffer pH 7
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 3.10 Å
9BDP 80S ribosome bound with angiogenin and complex of eEF1A and Ala-tRNAAla Deposited 2024-04-12 Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 78 PDB declaration: 86-meric
Chain AS05 14–204（191 aa）
Not recorded No recorded non-water small molecule ELECTRON MICROSCOPY
cryo-EM buffer pH 7
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 3.70 Å
9C8K Rabbit Hemorrhagic Disease Virus reinitiation stimulating TURBS RNA bound to rabbit ribosome Deposited 2024-06-12 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 33 PDB declaration: 35-meric
Chain F 1–204（204 aa）
Not recorded MG MAGNESIUM ION × 74 ZN ZINC ION × 2 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5；20 mM Tris-HCl pH 7.5, 2 mM MgOAc2, 150 mM KCl
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 3.10 Å
9F1B Mammalian ternary complex of a translating 80S ribosome, NAC and NatA/E Deposited 2024-04-18 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Insufficient information Heteromer；Protein × 83 PDB declaration: 89-meric
Chain Ae 1–204（204 aa）
Not recorded MG MAGNESIUM ION × 420 ZN ZINC ION × 8 UNX UNKNOWN LIGAND × 306 IHP INOSITOL HEXAKISPHOSPHATE × 1 SPD SPERMIDINE × 30 SPM SPERMINE × 3 GTP GUANOSINE-5'-TRIPHOSPHATE × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.4
cryo-EM vitrification conditions Cryogen ETHANE-PROPANE
Resolution 3.01 Å
9F1C Mammalian quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatA/E Deposited 2024-04-18 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Insufficient information Heteromer；Protein × 84 PDB declaration: 90-meric
Chain Ae 1–204（204 aa）
Not recorded UNX UNKNOWN LIGAND × 277 MG MAGNESIUM ION × 420 GTP GUANOSINE-5'-TRIPHOSPHATE × 1 SPD SPERMIDINE × 30 SPM SPERMINE × 3 ZN ZINC ION × 8 IHP INOSITOL HEXAKISPHOSPHATE × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.4
cryo-EM vitrification conditions Cryogen ETHANE-PROPANE
Resolution 3.78 Å
9F1D Mammalian quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatA/E-HYPK Deposited 2024-04-18 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 85 PDB declaration: 91-meric
Chain Ae 1–204（204 aa）
Not recorded UNX UNKNOWN LIGAND × 295 SPD SPERMIDINE × 30 MG MAGNESIUM ION × 420 SPM SPERMINE × 3 GTP GUANOSINE-5'-TRIPHOSPHATE × 1 IHP INOSITOL HEXAKISPHOSPHATE × 1 ZN ZINC ION × 8 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.4
cryo-EM vitrification conditions Cryogen ETHANE-PROPANE
Resolution 3.26 Å
9H6Y Late-stage 48S Initiation Complex (LS48S IC) guided by the trans-RNA Deposited 2024-10-25 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 39 PDB declaration: 42-meric
Chain H 1–204（204 aa）
Not recorded SF4 IRON/SULFUR CLUSTER × 2 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.4；10 mM HEPES-KOH pH 7.4, 5 mM Mg(OAc)2, 50 mM KOAc, 10 mM NH4Cl, 2 mM DTT and Roche cOmplete protease inhibitor cocktail
cryo-EM vitrification conditions Cryogen ETHANE；The sample was incubated on the grid for 30 s and then blotted with filter paper from both sides for 1.5 s with the blot force 5
Resolution 2.90 Å
9H74 Late-stage 48S Initiation Complex with eIF3 (LS48S-eIF3 IC) guided by the trans-RNA Deposited 2024-10-25 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 48 PDB declaration: 51-meric
Chain H 1–204（204 aa）
Not recorded SF4 IRON/SULFUR CLUSTER × 2 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.4；10 mM HEPES-KOH pH 7.4, 5 mM Mg(OAc)2, 50 mM KOAc, 10 mM NH4Cl, 2 mM DTT and Roche cOmplete protease inhibitor cocktail
cryo-EM vitrification conditions Cryogen ETHANE；The sample was incubated on the grid for 30 s and then blotted with filter paper from both sides for 1.5 s with the blot force 5
Resolution 2.90 Å
9MR4 NAC: Ribosome nascent chain complex(Oxa1L) Deposited 2025-01-06 Different oligomeric state Different ligand/ion Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 78 PDB declaration: 84-meric
Chain y 1–204（204 aa）
Not recorded ZN ZINC ION × 6 MG MAGNESIUM ION × 285 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 2.65 Å
9NDP Structure of stalled ribosome and nascent chain in complex with NMT2 and NAC Deposited 2025-02-18 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Insufficient information Heteromer；Protein × 81 PDB declaration: 87-meric
Chain y 1–204（204 aa）
Not recorded MG MAGNESIUM ION × 296 ZN ZINC ION × 6 COA COENZYME A × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.7
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 2.82 Å
9OGY Megrivirus E 3' internal ribosome entry site (IRES) RNA core region bound to rabbit ribosome Deposited 2025-05-02 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 34 PDB declaration: 36-meric
Chain G 1–204（204 aa）
Not recorded ZN ZINC ION × 2 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5；20 mM Tris-HCl pH 7.5, 2 mM MgOAc2, 150 mM KCl
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 3.28 Å
9Q7Q ABCE1-eRF1-RNC-AMD1C Deposited 2025-08-25 Different oligomeric state Different ligand/ion Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 80 PDB declaration: 86-meric
Chain y 1–204（204 aa）
Not recorded MG MAGNESIUM ION × 291 ZN ZINC ION × 6 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 2.86 Å
9QQA Ternary complex of translating ribosome, NAC and NMT1 Deposited 2025-03-31 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 81 PDB declaration: 86-meric
Chain Ae 1–204（204 aa）
Not recorded MG MAGNESIUM ION × 407 UNX UNKNOWN LIGAND × 187 SPD SPERMIDINE × 30 SPM SPERMINE × 3 ZN ZINC ION × 8 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.6
cryo-EM vitrification conditions Cryogen ETHANE-PROPANE
Resolution 2.80 Å
9QQB Quaternary complex of a translating ribosome, NAC, NMT1, and NatA Deposited 2025-03-31 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 84 PDB declaration: 89-meric
Chain Ae 1–204（204 aa）
Not recorded SPD SPERMIDINE × 30 SPM SPERMINE × 3 MG MAGNESIUM ION × 412 UNX UNKNOWN LIGAND × 168 ZN ZINC ION × 8 IHP INOSITOL HEXAKISPHOSPHATE × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.6
cryo-EM vitrification conditions Cryogen ETHANE-PROPANE
Resolution 3.43 Å
9RHU Rabbit 80S ribosome in complex with eRF1-AAQ, stalled at the Stop codon in mutated F2A sequence Deposited 2025-06-10 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 81 PDB declaration: 88-meric
Chain Q1 1–204（204 aa）
Not recorded MG MAGNESIUM ION × 367 ZN ZINC ION × 8 K POTASSIUM ION × 37 SPD SPERMIDINE × 2 GTP GUANOSINE-5'-TRIPHOSPHATE × 1 SF4 IRON/SULFUR CLUSTER × 2 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.4
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 2.65 Å
9UZK EMCV IRES captured on mammalian 40S with initiator tRNA Deposited 2025-05-16 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 34 PDB declaration: 37-meric
Chain H 1–204（204 aa）
Not recorded No recorded non-water small molecule ELECTRON MICROSCOPY
cryo-EM buffer pH 7.4；20mM HEPES, 150mM KOAc, 2mM MgCl2, 1mM DTT, 0.5mM Spermidine, 6mM GMP-PnP
cryo-EM vitrification conditions Cryogen ETHANE-PROPANE
Resolution 4.60 Å
9UZL EMCV IRES captured on mammalian 40S ribosome with initiator tRNA and eIF2 Deposited 2025-05-16 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 36 PDB declaration: 39-meric
Chain H 1–204（204 aa）
Not recorded No recorded non-water small molecule ELECTRON MICROSCOPY
cryo-EM buffer pH 7.4；20mM HEPES, 150mM KOAc, 2mM MgCl2, 1mM DTT, 0.5mM Spermidine, 6mM GMP-PnP
cryo-EM vitrification conditions Cryogen ETHANE-PROPANE
Resolution 5.01 Å
9UZM 40S ribosome without initiation factors Deposited 2025-05-16 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 34 PDB declaration: 35-meric
Chain H 1–204（204 aa）
Not recorded No recorded non-water small molecule ELECTRON MICROSCOPY
cryo-EM buffer pH 7.4；20mM HEPES, 150mM KOAc, 2mM MgCl2, 1mM DTT, 0.5mM Spermidine, 6mM GMP-PnP
cryo-EM vitrification conditions Cryogen ETHANE-PROPANE
Resolution 4.50 Å
9YPG GTPBP1*GCP*Phe-tRNA*ribosome in the GTPase activation-like state, Structure III Deposited 2025-10-14 Different oligomeric state Different ligand/ion Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 76 PDB declaration: 84-meric
Chain FF 1–204（204 aa）
Not recorded SPD SPERMIDINE × 1 ZN ZINC ION × 6 GTP GUANOSINE-5'-TRIPHOSPHATE × 1 PHE PHENYLALANINE × 1 ATP ADENOSINE-5'-TRIPHOSPHATE × 2 MET METHIONINE × 1 K POTASSIUM ION × 1 GCP PHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTER × 1 MG MAGNESIUM ION × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 3.00 Å
9YPO GTPBP1*GCP*Phe-tRNA*ribosome in the open state, Structure IIa Deposited 2025-10-14 Different oligomeric state Different ligand/ion Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 76 PDB declaration: 84-meric
Chain FF 1–204（204 aa）
Not recorded SPD SPERMIDINE × 1 ZN ZINC ION × 6 GTP GUANOSINE-5'-TRIPHOSPHATE × 1 PHE PHENYLALANINE × 1 ATP ADENOSINE-5'-TRIPHOSPHATE × 2 MET METHIONINE × 1 GCP PHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTER × 1 MG MAGNESIUM ION × 1 K POTASSIUM ION × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 3.00 Å
9YPS GTPBP1*GCP*Phe-tRNA*ribosome in the open state, Structure IIb Deposited 2025-10-14 Different oligomeric state Different ligand/ion Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 76 PDB declaration: 84-meric
Chain FF 1–204（204 aa）
Not recorded SPD SPERMIDINE × 1 ZN ZINC ION × 6 GTP GUANOSINE-5'-TRIPHOSPHATE × 1 PHE PHENYLALANINE × 1 ATP ADENOSINE-5'-TRIPHOSPHATE × 2 MET METHIONINE × 1 K POTASSIUM ION × 1 GCP PHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTER × 1 MG MAGNESIUM ION × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 3.00 Å
9YPT GTPBP1*GCP*Phe-tRNA*ribosome in the open state, Structure IIc Deposited 2025-10-14 Different oligomeric state Different ligand/ion Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 76 PDB declaration: 84-meric
Chain FF 1–204（204 aa）
Not recorded SPD SPERMIDINE × 1 ZN ZINC ION × 6 GTP GUANOSINE-5'-TRIPHOSPHATE × 1 PHE PHENYLALANINE × 1 ATP ADENOSINE-5'-TRIPHOSPHATE × 2 MET METHIONINE × 1 GCP PHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTER × 1 MG MAGNESIUM ION × 1 K POTASSIUM ION × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 3.10 Å
9YPV GTPBP1*GCP*Phe-tRNA*ribosome in the open state, Structure IId Deposited 2025-10-14 Different oligomeric state Different ligand/ion Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 76 PDB declaration: 84-meric
Chain FF 1–204（204 aa）
Not recorded SPD SPERMIDINE × 1 ZN ZINC ION × 6 GTP GUANOSINE-5'-TRIPHOSPHATE × 1 PHE PHENYLALANINE × 1 ATP ADENOSINE-5'-TRIPHOSPHATE × 2 MET METHIONINE × 1 K POTASSIUM ION × 1 GCP PHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTER × 1 MG MAGNESIUM ION × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 3.00 Å
9YPW GTPBP1*GDP*Phe-tRNA*ribosome in the post-GTP hydrolysis state, Structure IV Deposited 2025-10-14 Different oligomeric state Different ligand/ion Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 76 PDB declaration: 84-meric
Chain FF 1–204（204 aa）
Not recorded SPD SPERMIDINE × 1 ZN ZINC ION × 6 GTP GUANOSINE-5'-TRIPHOSPHATE × 1 PHE PHENYLALANINE × 1 ATP ADENOSINE-5'-TRIPHOSPHATE × 2 MET METHIONINE × 1 K POTASSIUM ION × 1 GDP GUANOSINE-5'-DIPHOSPHATE × 1 MG MAGNESIUM ION × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 2.90 Å
9YPY Ribosome with accommodated A-site tRNA, Structure V Deposited 2025-10-14 Different oligomeric state Different ligand/ion Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 75 PDB declaration: 83-meric
Chain FF 1–204（204 aa）
Not recorded SPD SPERMIDINE × 1 ZN ZINC ION × 6 GTP GUANOSINE-5'-TRIPHOSPHATE × 1 PHE PHENYLALANINE × 1 ATP ADENOSINE-5'-TRIPHOSPHATE × 2 MET METHIONINE × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 3.00 Å
9YPZ Vacant ribosome with P-site tRNA, substate 1, Structure Ia Deposited 2025-10-14 Different oligomeric state Different ligand/ion Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 75 PDB declaration: 82-meric
Chain FF 1–204（204 aa）
Not recorded SPD SPERMIDINE × 1 ZN ZINC ION × 6 ATP ADENOSINE-5'-TRIPHOSPHATE × 2 MET METHIONINE × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 2.90 Å
9YQ0 Vacant ribosome with P-site tRNA, substate 2, Structure Ib Deposited 2025-10-14 Different oligomeric state Different ligand/ion Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 75 PDB declaration: 82-meric
Chain FF 1–204（204 aa）
Not recorded SPD SPERMIDINE × 1 ZN ZINC ION × 6 ATP ADENOSINE-5'-TRIPHOSPHATE × 2 MET METHIONINE × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 2.90 Å
9YQ1 Vacant ribosome with P-site tRNA, substate 3, Structure Ic Deposited 2025-10-14 Different oligomeric state Different ligand/ion Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 75 PDB declaration: 82-meric
Chain FF 1–204（204 aa）
Not recorded SPD SPERMIDINE × 1 ZN ZINC ION × 6 ATP ADENOSINE-5'-TRIPHOSPHATE × 2 MET METHIONINE × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 2.90 Å

117 other PDB entries and 117 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name G1TFM5_RABIT
Isoform —
PDB entities 69
Chains and sequence ranges Author chain Ae； PDBConstruct 1–204； UniProt 1–204

Small ribosomal subunit protein RACK1

OrganismNot specified

UniProt P63247

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein–RNA Heteromer Protein × 75 RNA 5 PDB declaration: 80-meric（80） Consistent with all polymer counts Chain AF； UniProt 1–317 Not recorded 28S rRNA × 1 5.8S rRNA × 1 5S rRNA × 1 60S ribosomal protein L41 × 1 （A0A087WNH4） 60S ribosomal protein L8 × 1 （F1NIX0） Ribosomal protein uL3 × 1 （Q5ZJZ2） 60S ribosomal protein L4 C-terminal domain-containing protein × 1 （Q5ZII1） Large ribosomal subunit protein uL18 × 1 （P22451） 60S ribosomal protein L6 × 1 （Q8UWG7） Large ribosomal subunit protein uL30 × 1 （Q5ZJ56） Large ribosomal subunit protein eL8 × 1 （P32429） 60S ribosomal protein L9 × 1 （A0A1D5NVI1） Large ribosomal subunit protein uL16 × 1 （Q08200） 60S ribosomal protein L11 × 1 （A0A1D5P3B1） Large ribosomal subunit protein eL13 × 1 （P41125） 60S ribosomal protein L14 × 1 （Q98TF9） Ribosomal protein L15 × 1 （F1NQG5） Ribosomal protein uL13 × 1 60S ribosomal protein L17 × 1 （A0A1D5PR40） Ribosomal protein L18 × 1 Ribosomal protein L19 × 1 （Q5ZKK8） 60S ribosomal protein L18a × 1 60S ribosomal protein L21 × 1 （R4GIQ2） Large ribosomal subunit protein eL22 × 1 （Q98TF8） Large ribosomal subunit protein uL14 × 1 Ribosomal protein L24 × 1 （A0A8V0XRE7） Ribosomal protein uL23 × 1 Ribosomal protein L26 like 1 × 1 （F2Z4K6） Large ribosomal subunit protein eL27 × 1 （P61355） Ribosomal protein uL15 × 1 60S ribosomal protein L29 × 1 （A0A1L1RNZ2） Large ribosomal subunit protein eL30 × 1 （P67883） 60S ribosomal protein L31 × 1 （A0A1L1RT94） Ribosomal protein L32 × 1 （E1BVB1） 60S ribosomal protein L35a × 1 （A0A8V0YS49） 60S ribosomal protein L34 × 1 （A0A1L1S0X5） Large ribosomal subunit protein uL29 × 1 （Q98TF7） Large ribosomal subunit protein eL36 × 1 （Q98TF6） Ribosomal protein L37 × 1 （E1C810） 60S ribosomal protein L38 × 1 （E1BU66） Large ribosomal subunit protein eL39 × 1 （Q98TF5） Ubiquitin-60S ribosomal protein L40 × 1 （O42388） Ribosomal protein L36a like × 1 （A0A8V0YUB1） Large ribosomal subunit protein eL43 × 1 （P32046） 60S ribosomal protein L28 × 1 （Q5F346） 18S rRNA × 1 Small ribosomal subunit protein eS1 × 1 40S ribosomal protein S27 × 1 （A0A3Q2TV39） 40S ribosomal protein S28 × 1 （A0A3Q2U825） 40S ribosomal protein S2 × 1 （A0A8V0Z891） Small ribosomal subunit protein eS4 × 1 （P47836） Ribosomal protein eS30 × 1 40S ribosomal protein S26 × 1 （Q5ZM66） Small ribosomal subunit protein eS6 × 1 （P47838） 40S ribosomal protein S7 × 1 （F1NN16） 40S ribosomal protein S8 × 1 （F1NB02） 40S ribosomal protein S9 × 1 （B7NZS8） 40S ribosomal protein S11 × 1 （Q98TH5） Small ribosomal subunit protein uS15 × 1 （Q6ITC7） Ribosomal protein S14 × 1 （Q5ZHW8） 40S ribosomal protein S20 × 1 （F1NH93） Small ribosomal subunit protein eS21 × 1 40S ribosomal protein S15a × 1 （A0A3Q3A7P6） Small ribosomal subunit protein uS12 × 1 40S ribosomal protein S24 × 1 （F1NF89） Small ribosomal subunit protein uS2 × 1 （P50890） Ribosomal protein S16 × 1 （R4GGJ0） Ubiquitin × 1 （P79781） Ribosomal protein S5 × 1 （G1TFM5） 40S ribosomal protein S29 × 1 （A0A8V0Z8V3） Ribosomal protein S10 × 1 （E1C4N0） Small ribosomal subunit protein eS12 × 1 （P84175） Small ribosomal subunit protein uS19 × 1 （P62846） 40S ribosomal protein S18 × 1 （G1TPG3） 40S ribosomal protein S19 × 1 40S ribosomal protein S25 × 1 （A0A8V1A7V4） DNA-(apurinic or apyrimidinic site) lyase × 1 （F1NPA9） Phe tRNA × 1 Small ribosomal subunit protein eS17 × 1 （P08636） MG MAGNESIUM ION × 494 ZN ZINC ION × 7 ELECTRON MICROSCOPY cryo-EM buffer：pH 7.5 cryo-EM vitrification conditions：Cryogen ETHANE Resolution 2.50 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

Other PDB Difference from Current Entry 8Q7Z Assembly / Oligomeric State Construct Mutations and Modifications Ligands, Ions and Non-polymers Method and Experimental Conditions Structure Quality
8Q87 Structure of the G. gallus 80S rotated ribosome in complex with eEF2 and SERBP1 Deposited 2023-08-18 Different oligomeric state Different ligand/ion Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 80 PDB declaration: 85-meric
Chain AF 1–317（317 aa）
Not recorded MG MAGNESIUM ION × 492 ZN ZINC ION × 8 GDP GUANOSINE-5'-DIPHOSPHATE × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 2.40 Å

1 other PDB entries and 1 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name RACK1_CHICK
Isoform —
PDB entities 70
Chains and sequence ranges Author chain AF； PDBConstruct 1–317； UniProt 1–317

40S ribosomal protein S29

OrganismNot specified

UniProt A0A8V0Z8V3

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein–RNA Heteromer Protein × 75 RNA 5 PDB declaration: 80-meric（80） Consistent with all polymer counts Chain AG； UniProt 1–171 Not recorded 28S rRNA × 1 5.8S rRNA × 1 5S rRNA × 1 60S ribosomal protein L41 × 1 （A0A087WNH4） 60S ribosomal protein L8 × 1 （F1NIX0） Ribosomal protein uL3 × 1 （Q5ZJZ2） 60S ribosomal protein L4 C-terminal domain-containing protein × 1 （Q5ZII1） Large ribosomal subunit protein uL18 × 1 （P22451） 60S ribosomal protein L6 × 1 （Q8UWG7） Large ribosomal subunit protein uL30 × 1 （Q5ZJ56） Large ribosomal subunit protein eL8 × 1 （P32429） 60S ribosomal protein L9 × 1 （A0A1D5NVI1） Large ribosomal subunit protein uL16 × 1 （Q08200） 60S ribosomal protein L11 × 1 （A0A1D5P3B1） Large ribosomal subunit protein eL13 × 1 （P41125） 60S ribosomal protein L14 × 1 （Q98TF9） Ribosomal protein L15 × 1 （F1NQG5） Ribosomal protein uL13 × 1 60S ribosomal protein L17 × 1 （A0A1D5PR40） Ribosomal protein L18 × 1 Ribosomal protein L19 × 1 （Q5ZKK8） 60S ribosomal protein L18a × 1 60S ribosomal protein L21 × 1 （R4GIQ2） Large ribosomal subunit protein eL22 × 1 （Q98TF8） Large ribosomal subunit protein uL14 × 1 Ribosomal protein L24 × 1 （A0A8V0XRE7） Ribosomal protein uL23 × 1 Ribosomal protein L26 like 1 × 1 （F2Z4K6） Large ribosomal subunit protein eL27 × 1 （P61355） Ribosomal protein uL15 × 1 60S ribosomal protein L29 × 1 （A0A1L1RNZ2） Large ribosomal subunit protein eL30 × 1 （P67883） 60S ribosomal protein L31 × 1 （A0A1L1RT94） Ribosomal protein L32 × 1 （E1BVB1） 60S ribosomal protein L35a × 1 （A0A8V0YS49） 60S ribosomal protein L34 × 1 （A0A1L1S0X5） Large ribosomal subunit protein uL29 × 1 （Q98TF7） Large ribosomal subunit protein eL36 × 1 （Q98TF6） Ribosomal protein L37 × 1 （E1C810） 60S ribosomal protein L38 × 1 （E1BU66） Large ribosomal subunit protein eL39 × 1 （Q98TF5） Ubiquitin-60S ribosomal protein L40 × 1 （O42388） Ribosomal protein L36a like × 1 （A0A8V0YUB1） Large ribosomal subunit protein eL43 × 1 （P32046） 60S ribosomal protein L28 × 1 （Q5F346） 18S rRNA × 1 Small ribosomal subunit protein eS1 × 1 40S ribosomal protein S27 × 1 （A0A3Q2TV39） 40S ribosomal protein S28 × 1 （A0A3Q2U825） 40S ribosomal protein S2 × 1 （A0A8V0Z891） Small ribosomal subunit protein eS4 × 1 （P47836） Ribosomal protein eS30 × 1 40S ribosomal protein S26 × 1 （Q5ZM66） Small ribosomal subunit protein eS6 × 1 （P47838） 40S ribosomal protein S7 × 1 （F1NN16） 40S ribosomal protein S8 × 1 （F1NB02） 40S ribosomal protein S9 × 1 （B7NZS8） 40S ribosomal protein S11 × 1 （Q98TH5） Small ribosomal subunit protein uS15 × 1 （Q6ITC7） Ribosomal protein S14 × 1 （Q5ZHW8） 40S ribosomal protein S20 × 1 （F1NH93） Small ribosomal subunit protein eS21 × 1 40S ribosomal protein S15a × 1 （A0A3Q3A7P6） Small ribosomal subunit protein uS12 × 1 40S ribosomal protein S24 × 1 （F1NF89） Small ribosomal subunit protein uS2 × 1 （P50890） Ribosomal protein S16 × 1 （R4GGJ0） Ubiquitin × 1 （P79781） Ribosomal protein S5 × 1 （G1TFM5） Small ribosomal subunit protein RACK1 × 1 （P63247） Ribosomal protein S10 × 1 （E1C4N0） Small ribosomal subunit protein eS12 × 1 （P84175） Small ribosomal subunit protein uS19 × 1 （P62846） 40S ribosomal protein S18 × 1 （G1TPG3） 40S ribosomal protein S19 × 1 40S ribosomal protein S25 × 1 （A0A8V1A7V4） DNA-(apurinic or apyrimidinic site) lyase × 1 （F1NPA9） Phe tRNA × 1 Small ribosomal subunit protein eS17 × 1 （P08636） MG MAGNESIUM ION × 494 ZN ZINC ION × 7 ELECTRON MICROSCOPY cryo-EM buffer：pH 7.5 cryo-EM vitrification conditions：Cryogen ETHANE Resolution 2.50 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

Other PDB Difference from Current Entry 8Q7Z Assembly / Oligomeric State Construct Mutations and Modifications Ligands, Ions and Non-polymers Method and Experimental Conditions Structure Quality
8Q87 Structure of the G. gallus 80S rotated ribosome in complex with eEF2 and SERBP1 Deposited 2023-08-18 Different oligomeric state Different ligand/ion Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 80 PDB declaration: 85-meric
Chain AG 1–171（171 aa）
Not recorded MG MAGNESIUM ION × 492 ZN ZINC ION × 8 GDP GUANOSINE-5'-DIPHOSPHATE × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 2.40 Å

1 other PDB entries and 1 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name A0A8V0Z8V3_CHICK
Isoform —
PDB entities 71
Chains and sequence ranges Author chain AG； PDBConstruct 1–171； UniProt 1–171

Ribosomal protein S10

OrganismNot specified

UniProt E1C4N0

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein–RNA Heteromer Protein × 75 RNA 5 PDB declaration: 80-meric（80） Consistent with all polymer counts Chain Aj； UniProt 1–165 Not recorded 28S rRNA × 1 5.8S rRNA × 1 5S rRNA × 1 60S ribosomal protein L41 × 1 （A0A087WNH4） 60S ribosomal protein L8 × 1 （F1NIX0） Ribosomal protein uL3 × 1 （Q5ZJZ2） 60S ribosomal protein L4 C-terminal domain-containing protein × 1 （Q5ZII1） Large ribosomal subunit protein uL18 × 1 （P22451） 60S ribosomal protein L6 × 1 （Q8UWG7） Large ribosomal subunit protein uL30 × 1 （Q5ZJ56） Large ribosomal subunit protein eL8 × 1 （P32429） 60S ribosomal protein L9 × 1 （A0A1D5NVI1） Large ribosomal subunit protein uL16 × 1 （Q08200） 60S ribosomal protein L11 × 1 （A0A1D5P3B1） Large ribosomal subunit protein eL13 × 1 （P41125） 60S ribosomal protein L14 × 1 （Q98TF9） Ribosomal protein L15 × 1 （F1NQG5） Ribosomal protein uL13 × 1 60S ribosomal protein L17 × 1 （A0A1D5PR40） Ribosomal protein L18 × 1 Ribosomal protein L19 × 1 （Q5ZKK8） 60S ribosomal protein L18a × 1 60S ribosomal protein L21 × 1 （R4GIQ2） Large ribosomal subunit protein eL22 × 1 （Q98TF8） Large ribosomal subunit protein uL14 × 1 Ribosomal protein L24 × 1 （A0A8V0XRE7） Ribosomal protein uL23 × 1 Ribosomal protein L26 like 1 × 1 （F2Z4K6） Large ribosomal subunit protein eL27 × 1 （P61355） Ribosomal protein uL15 × 1 60S ribosomal protein L29 × 1 （A0A1L1RNZ2） Large ribosomal subunit protein eL30 × 1 （P67883） 60S ribosomal protein L31 × 1 （A0A1L1RT94） Ribosomal protein L32 × 1 （E1BVB1） 60S ribosomal protein L35a × 1 （A0A8V0YS49） 60S ribosomal protein L34 × 1 （A0A1L1S0X5） Large ribosomal subunit protein uL29 × 1 （Q98TF7） Large ribosomal subunit protein eL36 × 1 （Q98TF6） Ribosomal protein L37 × 1 （E1C810） 60S ribosomal protein L38 × 1 （E1BU66） Large ribosomal subunit protein eL39 × 1 （Q98TF5） Ubiquitin-60S ribosomal protein L40 × 1 （O42388） Ribosomal protein L36a like × 1 （A0A8V0YUB1） Large ribosomal subunit protein eL43 × 1 （P32046） 60S ribosomal protein L28 × 1 （Q5F346） 18S rRNA × 1 Small ribosomal subunit protein eS1 × 1 40S ribosomal protein S27 × 1 （A0A3Q2TV39） 40S ribosomal protein S28 × 1 （A0A3Q2U825） 40S ribosomal protein S2 × 1 （A0A8V0Z891） Small ribosomal subunit protein eS4 × 1 （P47836） Ribosomal protein eS30 × 1 40S ribosomal protein S26 × 1 （Q5ZM66） Small ribosomal subunit protein eS6 × 1 （P47838） 40S ribosomal protein S7 × 1 （F1NN16） 40S ribosomal protein S8 × 1 （F1NB02） 40S ribosomal protein S9 × 1 （B7NZS8） 40S ribosomal protein S11 × 1 （Q98TH5） Small ribosomal subunit protein uS15 × 1 （Q6ITC7） Ribosomal protein S14 × 1 （Q5ZHW8） 40S ribosomal protein S20 × 1 （F1NH93） Small ribosomal subunit protein eS21 × 1 40S ribosomal protein S15a × 1 （A0A3Q3A7P6） Small ribosomal subunit protein uS12 × 1 40S ribosomal protein S24 × 1 （F1NF89） Small ribosomal subunit protein uS2 × 1 （P50890） Ribosomal protein S16 × 1 （R4GGJ0） Ubiquitin × 1 （P79781） Ribosomal protein S5 × 1 （G1TFM5） Small ribosomal subunit protein RACK1 × 1 （P63247） 40S ribosomal protein S29 × 1 （A0A8V0Z8V3） Small ribosomal subunit protein eS12 × 1 （P84175） Small ribosomal subunit protein uS19 × 1 （P62846） 40S ribosomal protein S18 × 1 （G1TPG3） 40S ribosomal protein S19 × 1 40S ribosomal protein S25 × 1 （A0A8V1A7V4） DNA-(apurinic or apyrimidinic site) lyase × 1 （F1NPA9） Phe tRNA × 1 Small ribosomal subunit protein eS17 × 1 （P08636） MG MAGNESIUM ION × 494 ZN ZINC ION × 7 ELECTRON MICROSCOPY cryo-EM buffer：pH 7.5 cryo-EM vitrification conditions：Cryogen ETHANE Resolution 2.50 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

Other PDB Difference from Current Entry 8Q7Z Assembly / Oligomeric State Construct Mutations and Modifications Ligands, Ions and Non-polymers Method and Experimental Conditions Structure Quality
8Q87 Structure of the G. gallus 80S rotated ribosome in complex with eEF2 and SERBP1 Deposited 2023-08-18 Different oligomeric state Different ligand/ion Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 80 PDB declaration: 85-meric
Chain Aj 1–165（165 aa）
Not recorded MG MAGNESIUM ION × 492 ZN ZINC ION × 8 GDP GUANOSINE-5'-DIPHOSPHATE × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 2.40 Å

1 other PDB entries and 1 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name E1C4N0_CHICK
Isoform —
PDB entities 72
Chains and sequence ranges Author chain Aj； PDBConstruct 1–165； UniProt 1–165

Small ribosomal subunit protein eS12

OrganismNot specified

UniProt P84175

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein–RNA Heteromer Protein × 75 RNA 5 PDB declaration: 80-meric（80） Consistent with all polymer counts Chain Al； UniProt 1–132 Not recorded 28S rRNA × 1 5.8S rRNA × 1 5S rRNA × 1 60S ribosomal protein L41 × 1 （A0A087WNH4） 60S ribosomal protein L8 × 1 （F1NIX0） Ribosomal protein uL3 × 1 （Q5ZJZ2） 60S ribosomal protein L4 C-terminal domain-containing protein × 1 （Q5ZII1） Large ribosomal subunit protein uL18 × 1 （P22451） 60S ribosomal protein L6 × 1 （Q8UWG7） Large ribosomal subunit protein uL30 × 1 （Q5ZJ56） Large ribosomal subunit protein eL8 × 1 （P32429） 60S ribosomal protein L9 × 1 （A0A1D5NVI1） Large ribosomal subunit protein uL16 × 1 （Q08200） 60S ribosomal protein L11 × 1 （A0A1D5P3B1） Large ribosomal subunit protein eL13 × 1 （P41125） 60S ribosomal protein L14 × 1 （Q98TF9） Ribosomal protein L15 × 1 （F1NQG5） Ribosomal protein uL13 × 1 60S ribosomal protein L17 × 1 （A0A1D5PR40） Ribosomal protein L18 × 1 Ribosomal protein L19 × 1 （Q5ZKK8） 60S ribosomal protein L18a × 1 60S ribosomal protein L21 × 1 （R4GIQ2） Large ribosomal subunit protein eL22 × 1 （Q98TF8） Large ribosomal subunit protein uL14 × 1 Ribosomal protein L24 × 1 （A0A8V0XRE7） Ribosomal protein uL23 × 1 Ribosomal protein L26 like 1 × 1 （F2Z4K6） Large ribosomal subunit protein eL27 × 1 （P61355） Ribosomal protein uL15 × 1 60S ribosomal protein L29 × 1 （A0A1L1RNZ2） Large ribosomal subunit protein eL30 × 1 （P67883） 60S ribosomal protein L31 × 1 （A0A1L1RT94） Ribosomal protein L32 × 1 （E1BVB1） 60S ribosomal protein L35a × 1 （A0A8V0YS49） 60S ribosomal protein L34 × 1 （A0A1L1S0X5） Large ribosomal subunit protein uL29 × 1 （Q98TF7） Large ribosomal subunit protein eL36 × 1 （Q98TF6） Ribosomal protein L37 × 1 （E1C810） 60S ribosomal protein L38 × 1 （E1BU66） Large ribosomal subunit protein eL39 × 1 （Q98TF5） Ubiquitin-60S ribosomal protein L40 × 1 （O42388） Ribosomal protein L36a like × 1 （A0A8V0YUB1） Large ribosomal subunit protein eL43 × 1 （P32046） 60S ribosomal protein L28 × 1 （Q5F346） 18S rRNA × 1 Small ribosomal subunit protein eS1 × 1 40S ribosomal protein S27 × 1 （A0A3Q2TV39） 40S ribosomal protein S28 × 1 （A0A3Q2U825） 40S ribosomal protein S2 × 1 （A0A8V0Z891） Small ribosomal subunit protein eS4 × 1 （P47836） Ribosomal protein eS30 × 1 40S ribosomal protein S26 × 1 （Q5ZM66） Small ribosomal subunit protein eS6 × 1 （P47838） 40S ribosomal protein S7 × 1 （F1NN16） 40S ribosomal protein S8 × 1 （F1NB02） 40S ribosomal protein S9 × 1 （B7NZS8） 40S ribosomal protein S11 × 1 （Q98TH5） Small ribosomal subunit protein uS15 × 1 （Q6ITC7） Ribosomal protein S14 × 1 （Q5ZHW8） 40S ribosomal protein S20 × 1 （F1NH93） Small ribosomal subunit protein eS21 × 1 40S ribosomal protein S15a × 1 （A0A3Q3A7P6） Small ribosomal subunit protein uS12 × 1 40S ribosomal protein S24 × 1 （F1NF89） Small ribosomal subunit protein uS2 × 1 （P50890） Ribosomal protein S16 × 1 （R4GGJ0） Ubiquitin × 1 （P79781） Ribosomal protein S5 × 1 （G1TFM5） Small ribosomal subunit protein RACK1 × 1 （P63247） 40S ribosomal protein S29 × 1 （A0A8V0Z8V3） Ribosomal protein S10 × 1 （E1C4N0） Small ribosomal subunit protein uS19 × 1 （P62846） 40S ribosomal protein S18 × 1 （G1TPG3） 40S ribosomal protein S19 × 1 40S ribosomal protein S25 × 1 （A0A8V1A7V4） DNA-(apurinic or apyrimidinic site) lyase × 1 （F1NPA9） Phe tRNA × 1 Small ribosomal subunit protein eS17 × 1 （P08636） MG MAGNESIUM ION × 494 ZN ZINC ION × 7 ELECTRON MICROSCOPY cryo-EM buffer：pH 7.5 cryo-EM vitrification conditions：Cryogen ETHANE Resolution 2.50 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

Other PDB Difference from Current Entry 8Q7Z Assembly / Oligomeric State Construct Mutations and Modifications Ligands, Ions and Non-polymers Method and Experimental Conditions Structure Quality
8Q87 Structure of the G. gallus 80S rotated ribosome in complex with eEF2 and SERBP1 Deposited 2023-08-18 Different oligomeric state Different ligand/ion Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 80 PDB declaration: 85-meric
Chain Al 1–132（132 aa）
Not recorded MG MAGNESIUM ION × 492 ZN ZINC ION × 8 GDP GUANOSINE-5'-DIPHOSPHATE × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 2.40 Å

1 other PDB entries and 1 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name RS12_CHICK
Isoform —
PDB entities 73
Chains and sequence ranges Author chain Al； PDBConstruct 1–132； UniProt 1–132

Small ribosomal subunit protein uS19

OrganismNot specified

UniProt P62846

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein–RNA Heteromer Protein × 75 RNA 5 PDB declaration: 80-meric（80） Consistent with all polymer counts Chain Ao； UniProt 1–145 Not recorded 28S rRNA × 1 5.8S rRNA × 1 5S rRNA × 1 60S ribosomal protein L41 × 1 （A0A087WNH4） 60S ribosomal protein L8 × 1 （F1NIX0） Ribosomal protein uL3 × 1 （Q5ZJZ2） 60S ribosomal protein L4 C-terminal domain-containing protein × 1 （Q5ZII1） Large ribosomal subunit protein uL18 × 1 （P22451） 60S ribosomal protein L6 × 1 （Q8UWG7） Large ribosomal subunit protein uL30 × 1 （Q5ZJ56） Large ribosomal subunit protein eL8 × 1 （P32429） 60S ribosomal protein L9 × 1 （A0A1D5NVI1） Large ribosomal subunit protein uL16 × 1 （Q08200） 60S ribosomal protein L11 × 1 （A0A1D5P3B1） Large ribosomal subunit protein eL13 × 1 （P41125） 60S ribosomal protein L14 × 1 （Q98TF9） Ribosomal protein L15 × 1 （F1NQG5） Ribosomal protein uL13 × 1 60S ribosomal protein L17 × 1 （A0A1D5PR40） Ribosomal protein L18 × 1 Ribosomal protein L19 × 1 （Q5ZKK8） 60S ribosomal protein L18a × 1 60S ribosomal protein L21 × 1 （R4GIQ2） Large ribosomal subunit protein eL22 × 1 （Q98TF8） Large ribosomal subunit protein uL14 × 1 Ribosomal protein L24 × 1 （A0A8V0XRE7） Ribosomal protein uL23 × 1 Ribosomal protein L26 like 1 × 1 （F2Z4K6） Large ribosomal subunit protein eL27 × 1 （P61355） Ribosomal protein uL15 × 1 60S ribosomal protein L29 × 1 （A0A1L1RNZ2） Large ribosomal subunit protein eL30 × 1 （P67883） 60S ribosomal protein L31 × 1 （A0A1L1RT94） Ribosomal protein L32 × 1 （E1BVB1） 60S ribosomal protein L35a × 1 （A0A8V0YS49） 60S ribosomal protein L34 × 1 （A0A1L1S0X5） Large ribosomal subunit protein uL29 × 1 （Q98TF7） Large ribosomal subunit protein eL36 × 1 （Q98TF6） Ribosomal protein L37 × 1 （E1C810） 60S ribosomal protein L38 × 1 （E1BU66） Large ribosomal subunit protein eL39 × 1 （Q98TF5） Ubiquitin-60S ribosomal protein L40 × 1 （O42388） Ribosomal protein L36a like × 1 （A0A8V0YUB1） Large ribosomal subunit protein eL43 × 1 （P32046） 60S ribosomal protein L28 × 1 （Q5F346） 18S rRNA × 1 Small ribosomal subunit protein eS1 × 1 40S ribosomal protein S27 × 1 （A0A3Q2TV39） 40S ribosomal protein S28 × 1 （A0A3Q2U825） 40S ribosomal protein S2 × 1 （A0A8V0Z891） Small ribosomal subunit protein eS4 × 1 （P47836） Ribosomal protein eS30 × 1 40S ribosomal protein S26 × 1 （Q5ZM66） Small ribosomal subunit protein eS6 × 1 （P47838） 40S ribosomal protein S7 × 1 （F1NN16） 40S ribosomal protein S8 × 1 （F1NB02） 40S ribosomal protein S9 × 1 （B7NZS8） 40S ribosomal protein S11 × 1 （Q98TH5） Small ribosomal subunit protein uS15 × 1 （Q6ITC7） Ribosomal protein S14 × 1 （Q5ZHW8） 40S ribosomal protein S20 × 1 （F1NH93） Small ribosomal subunit protein eS21 × 1 40S ribosomal protein S15a × 1 （A0A3Q3A7P6） Small ribosomal subunit protein uS12 × 1 40S ribosomal protein S24 × 1 （F1NF89） Small ribosomal subunit protein uS2 × 1 （P50890） Ribosomal protein S16 × 1 （R4GGJ0） Ubiquitin × 1 （P79781） Ribosomal protein S5 × 1 （G1TFM5） Small ribosomal subunit protein RACK1 × 1 （P63247） 40S ribosomal protein S29 × 1 （A0A8V0Z8V3） Ribosomal protein S10 × 1 （E1C4N0） Small ribosomal subunit protein eS12 × 1 （P84175） 40S ribosomal protein S18 × 1 （G1TPG3） 40S ribosomal protein S19 × 1 40S ribosomal protein S25 × 1 （A0A8V1A7V4） DNA-(apurinic or apyrimidinic site) lyase × 1 （F1NPA9） Phe tRNA × 1 Small ribosomal subunit protein eS17 × 1 （P08636） MG MAGNESIUM ION × 494 ZN ZINC ION × 7 ELECTRON MICROSCOPY cryo-EM buffer：pH 7.5 cryo-EM vitrification conditions：Cryogen ETHANE Resolution 2.50 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

Other PDB Difference from Current Entry 8Q7Z Assembly / Oligomeric State Construct Mutations and Modifications Ligands, Ions and Non-polymers Method and Experimental Conditions Structure Quality
8Q87 Structure of the G. gallus 80S rotated ribosome in complex with eEF2 and SERBP1 Deposited 2023-08-18 Different oligomeric state Different ligand/ion Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 80 PDB declaration: 85-meric
Chain Ao 1–145（145 aa）
Not recorded MG MAGNESIUM ION × 492 ZN ZINC ION × 8 GDP GUANOSINE-5'-DIPHOSPHATE × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 2.40 Å

1 other PDB entries and 1 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name RS15_CHICK
Isoform —
PDB entities 74
Chains and sequence ranges Author chain Ao； PDBConstruct 1–145； UniProt 1–145

40S ribosomal protein S18

OrganismNot specified

UniProt G1TPG3

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein–RNA Heteromer Protein × 75 RNA 5 PDB declaration: 80-meric（80） Consistent with all polymer counts Chain Ar； UniProt 1–152 Not recorded 28S rRNA × 1 5.8S rRNA × 1 5S rRNA × 1 60S ribosomal protein L41 × 1 （A0A087WNH4） 60S ribosomal protein L8 × 1 （F1NIX0） Ribosomal protein uL3 × 1 （Q5ZJZ2） 60S ribosomal protein L4 C-terminal domain-containing protein × 1 （Q5ZII1） Large ribosomal subunit protein uL18 × 1 （P22451） 60S ribosomal protein L6 × 1 （Q8UWG7） Large ribosomal subunit protein uL30 × 1 （Q5ZJ56） Large ribosomal subunit protein eL8 × 1 （P32429） 60S ribosomal protein L9 × 1 （A0A1D5NVI1） Large ribosomal subunit protein uL16 × 1 （Q08200） 60S ribosomal protein L11 × 1 （A0A1D5P3B1） Large ribosomal subunit protein eL13 × 1 （P41125） 60S ribosomal protein L14 × 1 （Q98TF9） Ribosomal protein L15 × 1 （F1NQG5） Ribosomal protein uL13 × 1 60S ribosomal protein L17 × 1 （A0A1D5PR40） Ribosomal protein L18 × 1 Ribosomal protein L19 × 1 （Q5ZKK8） 60S ribosomal protein L18a × 1 60S ribosomal protein L21 × 1 （R4GIQ2） Large ribosomal subunit protein eL22 × 1 （Q98TF8） Large ribosomal subunit protein uL14 × 1 Ribosomal protein L24 × 1 （A0A8V0XRE7） Ribosomal protein uL23 × 1 Ribosomal protein L26 like 1 × 1 （F2Z4K6） Large ribosomal subunit protein eL27 × 1 （P61355） Ribosomal protein uL15 × 1 60S ribosomal protein L29 × 1 （A0A1L1RNZ2） Large ribosomal subunit protein eL30 × 1 （P67883） 60S ribosomal protein L31 × 1 （A0A1L1RT94） Ribosomal protein L32 × 1 （E1BVB1） 60S ribosomal protein L35a × 1 （A0A8V0YS49） 60S ribosomal protein L34 × 1 （A0A1L1S0X5） Large ribosomal subunit protein uL29 × 1 （Q98TF7） Large ribosomal subunit protein eL36 × 1 （Q98TF6） Ribosomal protein L37 × 1 （E1C810） 60S ribosomal protein L38 × 1 （E1BU66） Large ribosomal subunit protein eL39 × 1 （Q98TF5） Ubiquitin-60S ribosomal protein L40 × 1 （O42388） Ribosomal protein L36a like × 1 （A0A8V0YUB1） Large ribosomal subunit protein eL43 × 1 （P32046） 60S ribosomal protein L28 × 1 （Q5F346） 18S rRNA × 1 Small ribosomal subunit protein eS1 × 1 40S ribosomal protein S27 × 1 （A0A3Q2TV39） 40S ribosomal protein S28 × 1 （A0A3Q2U825） 40S ribosomal protein S2 × 1 （A0A8V0Z891） Small ribosomal subunit protein eS4 × 1 （P47836） Ribosomal protein eS30 × 1 40S ribosomal protein S26 × 1 （Q5ZM66） Small ribosomal subunit protein eS6 × 1 （P47838） 40S ribosomal protein S7 × 1 （F1NN16） 40S ribosomal protein S8 × 1 （F1NB02） 40S ribosomal protein S9 × 1 （B7NZS8） 40S ribosomal protein S11 × 1 （Q98TH5） Small ribosomal subunit protein uS15 × 1 （Q6ITC7） Ribosomal protein S14 × 1 （Q5ZHW8） 40S ribosomal protein S20 × 1 （F1NH93） Small ribosomal subunit protein eS21 × 1 40S ribosomal protein S15a × 1 （A0A3Q3A7P6） Small ribosomal subunit protein uS12 × 1 40S ribosomal protein S24 × 1 （F1NF89） Small ribosomal subunit protein uS2 × 1 （P50890） Ribosomal protein S16 × 1 （R4GGJ0） Ubiquitin × 1 （P79781） Ribosomal protein S5 × 1 （G1TFM5） Small ribosomal subunit protein RACK1 × 1 （P63247） 40S ribosomal protein S29 × 1 （A0A8V0Z8V3） Ribosomal protein S10 × 1 （E1C4N0） Small ribosomal subunit protein eS12 × 1 （P84175） Small ribosomal subunit protein uS19 × 1 （P62846） 40S ribosomal protein S19 × 1 40S ribosomal protein S25 × 1 （A0A8V1A7V4） DNA-(apurinic or apyrimidinic site) lyase × 1 （F1NPA9） Phe tRNA × 1 Small ribosomal subunit protein eS17 × 1 （P08636） MG MAGNESIUM ION × 494 ZN ZINC ION × 7 ELECTRON MICROSCOPY cryo-EM buffer：pH 7.5 cryo-EM vitrification conditions：Cryogen ETHANE Resolution 2.50 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

Other PDB Difference from Current Entry 8Q7Z Assembly / Oligomeric State Construct Mutations and Modifications Ligands, Ions and Non-polymers Method and Experimental Conditions Structure Quality
4D5L Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state Deposited 2014-11-05 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 33 PDB declaration: 34-meric
Chain S 1–152（152 aa）
Not recorded No recorded non-water small molecule ELECTRON MICROSCOPY
cryo-EM buffer 20 MM TRIS PH 7.5, 100 MM KCL, 1 MM DTT, 2.5 MM MGCL2, 0.5 MM GTP；pH 7.5；20 MM TRIS PH 7.5, 100 MM KCL, 1 MM DTT, 2.5 MM MGCL2, 0.5 MM GTP
cryo-EM vitrification conditions Cryogen ETHANE；LIQUID ETHANE
Resolution 9.00 Å
4KZX Rabbit 40S ribosomal subunit in complex with eIF1. Deposited 2013-05-30 Different oligomeric state Different ligand/ion Different experimental method Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 34 PDB declaration: 35-meric
Chain S 1–152（152 aa）
Not recorded No recorded non-water small molecule X-RAY DIFFRACTION
X-ray crystallization conditions VAPOR DIFFUSION；pH 8.5；292 K；0.1M Ammonium acetate, 0.05M Tris-HCl pH 8.5, 2.5% PEG-20K, 4-6% MPD, 5.0mM Mg acetate, 2.0mM TCEP, vapor diffusion, temperature 292K
Resolution 7.81 Å R-free 0.347
4KZY Rabbit 40S ribosomal subunit in complex with eIF1 and eIF1A. Deposited 2013-05-30 Different oligomeric state Different ligand/ion Different experimental method Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 35 PDB declaration: 36-meric
Chain S 1–152（152 aa）
Not recorded No recorded non-water small molecule X-RAY DIFFRACTION
X-ray crystallization conditions VAPOR DIFFUSION；pH 8.5；292 K；0.1M Ammonium acetate, 0.05M Tris-HCl pH 8.5, 2.5% PEG-20K, 4-6% MPD, 5.0mM Mg acetate, 2.0mM TCEP, vapor diffusion, temperature 292K
Resolution 7.01 Å R-free 0.348
4KZZ Rabbit 40S ribosomal subunit in complex with mRNA, initiator tRNA and eIF1A Deposited 2013-05-30 Different oligomeric state Different ligand/ion Different experimental method Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 34 PDB declaration: 37-meric
Chain S 1–152（152 aa）
Not recorded No recorded non-water small molecule X-RAY DIFFRACTION
X-ray crystallization conditions VAPOR DIFFUSION；pH 8.5；292 K；0.1M Ammonium acetate, 0.05M Tris-HCl pH 8.5, 2.5% PEG-20K, 4-6% MPD, 5.0mM Mg acetate, 2.0mM TCEP, vapor diffusion, temperature 292K
Resolution 7.03 Å R-free 0.359
5K0Y m48S late-stage initiation complex, purified from rabbit reticulocytes lysates, displaying eIF2 ternary complex and eIF3 i and g subunits relocated to the intersubunit face Deposited 2016-05-17 Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 39 PDB declaration: 42-meric
Chain L 6–142（137 aa）
Not recorded No recorded non-water small molecule ELECTRON MICROSCOPY
cryo-EM buffer pH 7.6
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 5.80 Å
5LZS Structure of the mammalian ribosomal elongation complex with aminoacyl-tRNA, eEF1A, and didemnin B Deposited 2016-10-02 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 78 PDB declaration: 86-meric
Chain SS 1–152（152 aa）
Not recorded MG MAGNESIUM ION × 276 ZN ZINC ION × 8 GDP GUANOSINE-5'-DIPHOSPHATE × 1 7C4 (2~{S})-~{N}-[(2~{R})-1-[[(3~{S},6~{S},8~{S},12~{S},13~{R},16~{S},17~{R},20~{S},23~{S})-13-[(2~{S})-butan-2-yl]-20-[(4-methoxyphenyl)methyl]-6,17,21-trimethyl-3-(2-methylpropyl)-12-oxidanyl-2,5,7,10,15,19,22-heptakis(oxidanylidene)-8-propan-2-yl-9,18-dioxa-1,4,14,21-tetrazabicyclo[21.3.0]hexacosan-16-yl]amino]-4-methyl-1-oxidanylidene-pentan-2-yl]-~{N}-methyl-1-[(2~{S})-2-oxidanylpropanoyl]pyrrolidine-2-carboxamide × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.4
cryo-EM vitrification conditions Cryogen ETHANE；3 ul aliquots were applied to the grid and incubated for 30 s, before blotting for 3s to remove excess solution.
Resolution 3.31 Å
5LZT Structure of the mammalian ribosomal termination complex with eRF1 and eRF3. Deposited 2016-10-02 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 80 PDB declaration: 87-meric
Chain SS 1–152（152 aa）
Not recorded MG MAGNESIUM ION × 282 ZN ZINC ION × 8 GCP PHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTER × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.4
cryo-EM vitrification conditions Cryogen ETHANE；3 ul aliquots were applied to the grid and incubated for 30 s, before blotting for 3s to remove excess solution.
Resolution 3.65 Å
5LZU Structure of the mammalian ribosomal termination complex with accommodated eRF1 Deposited 2016-10-02 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 78 PDB declaration: 85-meric
Chain SS 1–152（152 aa）
Not recorded MG MAGNESIUM ION × 258 ZN ZINC ION × 8 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.4
cryo-EM vitrification conditions Cryogen ETHANE；3 ul aliquots were applied to the grid and incubated for 30 s, before blotting for 3s to remove excess solution.
Resolution 3.75 Å
5LZV Structure of the mammalian ribosomal termination complex with accommodated eRF1(AAQ) and ABCE1. Deposited 2016-10-02 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 80 PDB declaration: 87-meric
Chain SS 1–152（152 aa）
Not recorded MG MAGNESIUM ION × 300 ZN ZINC ION × 8 SF4 IRON/SULFUR CLUSTER × 2 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.4
cryo-EM vitrification conditions Cryogen ETHANE；3 ul aliquots were applied to the grid and incubated for 30 s, before blotting for 3s to remove excess solution.
Resolution 3.35 Å
5LZW Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a truncated mRNA. Deposited 2016-10-02 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 80 PDB declaration: 87-meric
Chain SS 1–152（152 aa）
Not recorded MG MAGNESIUM ION × 281 ZN ZINC ION × 8 GCP PHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTER × 2 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.4
cryo-EM vitrification conditions Cryogen ETHANE；3 ul aliquots were applied to the grid and incubated for 30 s, before blotting for 3s to remove excess solution.
Resolution 3.53 Å
5LZX Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a UGA stop codon. Deposited 2016-10-02 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 80 PDB declaration: 87-meric
Chain SS 1–152（152 aa）
Not recorded MG MAGNESIUM ION × 264 ZN ZINC ION × 8 GCP PHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTER × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.4
cryo-EM vitrification conditions Cryogen ETHANE；3 ul aliquots were applied to the grid and incubated for 30 s, before blotting for 3s to remove excess solution.
Resolution 3.67 Å
5LZY Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a polyadenylated mRNA. Deposited 2016-10-02 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 79 PDB declaration: 86-meric
Chain SS 1–152（152 aa）
Not recorded MG MAGNESIUM ION × 236 ZN ZINC ION × 8 GCP PHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTER × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.4
cryo-EM vitrification conditions Cryogen ETHANE；3 ul aliquots were applied to the grid and incubated for 30 s, before blotting for 3s to remove excess solution.
Resolution 3.99 Å
5LZZ Structure of the mammalian rescue complex with Pelota and Hbs1l (combined) Deposited 2016-10-02 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 80 PDB declaration: 87-meric
Chain SS 1–152（152 aa）
Not recorded MG MAGNESIUM ION × 264 ZN ZINC ION × 8 GCP PHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTER × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.4
cryo-EM vitrification conditions Cryogen ETHANE；3 ul aliquots were applied to the grid and incubated for 30 s, before blotting for 3s to remove excess solution.
Resolution 3.47 Å
6D90 Mammalian 80S ribosome with a double translocated CrPV-IRES, P-site tRNA and eRF1. Deposited 2018-04-27 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 79 PDB declaration: 85-meric
Chain TT 1–152（152 aa）
Not recorded No recorded non-water small molecule ELECTRON MICROSCOPY
cryo-EM buffer pH 7.4
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 3.20 Å
6D9J Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1. Deposited 2018-04-30 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 79 PDB declaration: 85-meric
Chain TT 1–152（152 aa）
Not recorded ZN ZINC ION × 4 MG MAGNESIUM ION × 2 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.4
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 3.20 Å
6GZ3 tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-1 (TI-POST-1) Deposited 2018-07-03 Different construct Different oligomeric state Different ligand/ion Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 79 PDB declaration: 86-meric
Chain BS 4–142（139 aa）
Not recorded MG MAGNESIUM ION × 327 ZN ZINC ION × 5 GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 3.60 Å
6HCF Structure of the rabbit 80S ribosome stalled on globin mRNA at the stop codon Deposited 2018-08-14 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 81 PDB declaration: 87-meric
Chain T1 1–152（152 aa）
Not recorded MG MAGNESIUM ION × 300 ZN ZINC ION × 8 SF4 IRON/SULFUR CLUSTER × 2 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.4
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 3.90 Å
6HCJ Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs Deposited 2018-08-15 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 78 PDB declaration: 85-meric
Chain T2 1–152（152 aa）
Not recorded MG MAGNESIUM ION × 300 ZN ZINC ION × 8 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.4
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 3.80 Å
6HCM Structure of the rabbit collided di-ribosome (stalled monosome) Deposited 2018-08-15 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 81 PDB declaration: 87-meric
Chain T1 1–152（152 aa）
Not recorded MG MAGNESIUM ION × 300 ZN ZINC ION × 8 SF4 IRON/SULFUR CLUSTER × 2 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.4
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 6.80 Å
6HCQ Structure of the rabbit collided di-ribosome (collided monosome) Deposited 2018-08-16 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 78 PDB declaration: 85-meric
Chain T2 1–152（152 aa）
Not recorded MG MAGNESIUM ION × 300 ZN ZINC ION × 8 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.4
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 6.50 Å
6MTB Rabbit 80S ribosome with P- and Z-site tRNAs (unrotated state) Deposited 2018-10-19 Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 76 PDB declaration: 83-meric
Chain SS 2–145（144 aa）
Not recorded MG MAGNESIUM ION × 297 ZN ZINC ION × 8 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.4
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 3.60 Å
6MTC Rabbit 80S ribosome with Z-site tRNA and IFRD2 (unrotated state) Deposited 2018-10-19 Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 77 PDB declaration: 82-meric
Chain SS 2–145（144 aa）
Not recorded MG MAGNESIUM ION × 297 ZN ZINC ION × 8 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.4
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 3.40 Å
6MTD Rabbit 80S ribosome with eEF2 and SERBP1 (unrotated state with 40S head swivel) Deposited 2018-10-19 Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 80 PDB declaration: 84-meric
Chain SS 2–145（144 aa）
Not recorded MG MAGNESIUM ION × 297 ZN ZINC ION × 8 GDP GUANOSINE-5'-DIPHOSPHATE × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.4
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 3.30 Å
6MTE Rabbit 80S ribosome with eEF2 and SERBP1 (rotated state) Deposited 2018-10-19 Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 79 PDB declaration: 83-meric
Chain SS 2–145（144 aa）
Not recorded MG MAGNESIUM ION × 298 ZN ZINC ION × 8 GDP GUANOSINE-5'-DIPHOSPHATE × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.4
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 3.40 Å
6P4G Structure of a mammalian small ribosomal subunit in complex with the Israeli Acute Paralysis Virus IRES (Class 1) Deposited 2019-05-27 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 34 PDB declaration: 36-meric
Chain T 1–152（152 aa）
Not recorded No recorded non-water small molecule ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE；Blot force = 3s Wait time = 15s Drain time = 0s Blot time = 2.5 to 3 s
cryo-EM vitrification conditions Cryogen ETHANE；Blot force = 3s Wait time = 15s Drain time = 0s Blot time = 2.5 to 3 s
Resolution 3.10 Å
6P4H Structure of a mammalian small ribosomal subunit in complex with the Israeli Acute Paralysis Virus IRES (Class 2) Deposited 2019-05-27 Different oligomeric state Different ligand/ion Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 34 PDB declaration: 36-meric
Chain T 1–152（152 aa）
Not recorded No recorded non-water small molecule ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 3.20 Å
6P5I Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 1) Deposited 2019-05-30 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 76 PDB declaration: 81-meric
Chain T 1–152（152 aa）
Not recorded No recorded non-water small molecule ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE；Blot force = 3s Wait time = 15s Drain time = 0s Blot time = 2.5 to 3 s
Resolution 3.10 Å
6P5J Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 2) Deposited 2019-05-30 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 76 PDB declaration: 81-meric
Chain T 1–152（152 aa）
Not recorded No recorded non-water small molecule ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE；Blot force = 3s Wait time = 15s Drain time = 0s Blot time = 2.5 to 3 s
Resolution 3.10 Å
6P5K Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 3) Deposited 2019-05-30 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 76 PDB declaration: 81-meric
Chain T 1–152（152 aa）
Not recorded No recorded non-water small molecule ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE；Blot force = 3s Wait time = 15s Drain time = 0s Blot time = 2.5 to 3 s
Resolution 3.10 Å
6P5N Structure of a mammalian 80S ribosome in complex with a single translocated Israeli Acute Paralysis Virus IRES and eRF1 Deposited 2019-05-30 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 77 PDB declaration: 82-meric
Chain T 1–152（152 aa）
Not recorded No recorded non-water small molecule ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE；Blot force = 3s Wait time = 15s Drain time = 0s Blot time = 2.5s
Resolution 3.20 Å
6SGC Rabbit 80S ribosome stalled on a poly(A) tail Deposited 2019-08-03 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 79 PDB declaration: 86-meric
Chain T1 1–152（152 aa）
Not recorded MG MAGNESIUM ION × 275 ZN ZINC ION × 8 SPD SPERMIDINE × 2 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.4
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 2.80 Å
6W2S Structure of the Cricket Paralysis Virus 5-UTR IRES (CrPV 5-UTR-IRES) bound to the small ribosomal subunit in the open state (Class 1) Deposited 2020-03-08 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 41 PDB declaration: 43-meric
Chain T 1–152（152 aa）
Not recorded MG MAGNESIUM ION × 1 ZN ZINC ION × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE；Grids were blotted for 2.5s and flash cooled in liquid ethane
Resolution 3.47 Å
6W2T Structure of the Cricket Paralysis Virus 5-UTR IRES (CrPV 5-UTR-IRES) bound to the small ribosomal subunit in the closed state (Class 2) Deposited 2020-03-08 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 42 PDB declaration: 44-meric
Chain T 1–152（152 aa）
Not recorded MG MAGNESIUM ION × 1 ZN ZINC ION × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE；Grids were blotted for 2.5s and flash cooled in liquid ethane
Resolution 3.36 Å
6YAL Mammalian 48S late-stage initiation complex with beta-globin mRNA Deposited 2020-03-12 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 38 PDB declaration: 41-meric
Chain U 1–152（152 aa）
Not recorded SF4 IRON/SULFUR CLUSTER × 2 MG MAGNESIUM ION × 1 GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER × 2 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.4
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 3.00 Å
6YAM Mammalian 48S late-stage translation initiation complex (LS48S+eIF3 IC) with beta-globin mRNA Deposited 2020-03-12 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 47 PDB declaration: 50-meric
Chain U 1–152（152 aa）
Not recorded SF4 IRON/SULFUR CLUSTER × 2 MG MAGNESIUM ION × 1 GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER × 2 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.4
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 3.60 Å
6YAN Mammalian 48S late-stage translation initiation complex with histone 4 mRNA Deposited 2020-03-12 Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 36 PDB declaration: 39-meric
Chain U 6–147（142 aa）
Not recorded No recorded non-water small molecule ELECTRON MICROSCOPY
cryo-EM buffer pH 7.4
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 3.48 Å
6ZVK The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanism Deposited 2020-07-24 Different construct Different oligomeric state Different ligand/ion Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 80 PDB declaration: 85-meric
Chain G5 6–142（137 aa）
Not recorded ZN ZINC ION × 6 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 3.49 Å
7A01 The Halastavi arva virus intergenic region IRES promotes translation by the simplest possible initiation mechanism Deposited 2020-08-05 Different construct Different oligomeric state Different ligand/ion Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 80 PDB declaration: 85-meric
Chain G5 6–142（137 aa）
Not recorded ZN ZINC ION × 6 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 3.60 Å
7JQB SARS-CoV-2 Nsp1 and rabbit 40S ribosome complex Deposited 2020-08-10 Different oligomeric state Different ligand/ion Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 33 PDB declaration: 34-meric
Chain T 1–152（152 aa）
Not recorded No recorded non-water small molecule ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 2.70 Å
7JQC SARS-CoV-2 Nsp1, CrPV IRES and rabbit 40S ribosome complex Deposited 2020-08-10 Different oligomeric state Different ligand/ion Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 33 PDB declaration: 35-meric
Chain T 1–152（152 aa）
Not recorded No recorded non-water small molecule ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 3.30 Å
7MDZ 80S rabbit ribosome stalled with benzamide-CHX Deposited 2021-04-06 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 75 PDB declaration: 81-meric
Chain SS 1–152（152 aa）
Not recorded MG MAGNESIUM ION × 277 ZN ZINC ION × 8 Z2V N-[(1R,3S,4R,5S)-3-{(1R)-2-[(2R,4r,6S)-2,6-dihydroxypiperidin-4-yl]-1-hydroxyethyl}-4-hydroxy-1,5-dimethylcyclohexyl]benzamide × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.4
cryo-EM vitrification conditions Cryogen ETHANE；3 sec blot
Resolution 3.20 Å
7NWG Mammalian pre-termination 80S ribosome with Hybrid P/E- and A/P-site tRNA's bound by Blasticidin S. Deposited 2021-03-16 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 79 PDB declaration: 86-meric
Chain T2 1–152（152 aa）
Not recorded MG MAGNESIUM ION × 299 BLS BLASTICIDIN S × 1 ZN ZINC ION × 8 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.4；50 mM HEPES pH 7.4 100 mM KOAc 5 mM Mg(Oac)2 1mM DTT
cryo-EM vitrification conditions Cryogen ETHANE；30s sample incubation on grid followed by 1.1s blotting time.
Resolution 3.80 Å
7NWH Mammalian pre-termination 80S ribosome with eRF1 and eRF3 bound by Blasticidin S. Deposited 2021-03-16 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 79 PDB declaration: 84-meric
Chain SS 1–152（152 aa）
Not recorded ZN ZINC ION × 8 MG MAGNESIUM ION × 281 GCP PHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTER × 1 BLS BLASTICIDIN S × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.4；50 mM HEPES pH 7.4 100 mM KOAc 5 mM Mg(Oac)2 1mM DTT
cryo-EM vitrification conditions Cryogen ETHANE；30s sample incubation on grid followed by 1.1s blotting time.
Resolution 4.10 Å
7NWI Mammalian pre-termination 80S ribosome with Empty-A site bound by Blasticidin S Deposited 2021-03-16 Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 78 PDB declaration: 84-meric
Chain SS 6–142（137 aa）
Not recorded MG MAGNESIUM ION × 210 ZN ZINC ION × 5 BLS BLASTICIDIN S × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.4；50 mM HEPES pH 7.4 100 mM KOAc 5 mM Mg(Oac)2 1mM DTT
cryo-EM vitrification conditions Cryogen ETHANE；30s sample incubation on grid followed by 1.1s blotting time.
Resolution 3.13 Å
7O7Y Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (high resolution) Deposited 2021-04-14 Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 79 PDB declaration: 86-meric
Chain Ar 1–152（152 aa）
Non-standard monomer：Yes (specific site not provided by mmCIF) SPD SPERMIDINE × 30 SPM SPERMINE × 3 MG MAGNESIUM ION × 420 UNX UNKNOWN LIGAND × 330 ZN ZINC ION × 8 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.4
cryo-EM vitrification conditions Cryogen ETHANE-PROPANE
Resolution 2.20 Å
7O7Z Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (classified for pseudoknot) Deposited 2021-04-14 Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 79 PDB declaration: 86-meric
Chain Ar 1–152（152 aa）
Non-standard monomer：Yes (specific site not provided by mmCIF) SPD SPERMIDINE × 30 SPM SPERMINE × 3 MG MAGNESIUM ION × 420 UNX UNKNOWN LIGAND × 329 ZN ZINC ION × 8 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.4
cryo-EM vitrification conditions Cryogen ETHANE-PROPANE
Resolution 2.40 Å
7O80 Rabbit 80S ribosome in complex with eRF1 and ABCE1 stalled at the STOP codon in the mutated SARS-CoV-2 slippery site Deposited 2021-04-14 Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 81 PDB declaration: 88-meric
Chain Ar 1–152（152 aa）
Non-standard monomer：Yes (specific site not provided by mmCIF) SPD SPERMIDINE × 1 MG MAGNESIUM ION × 355 UNX UNKNOWN LIGAND × 374 ZN ZINC ION × 8 GTP GUANOSINE-5'-TRIPHOSPHATE × 1 SF4 IRON/SULFUR CLUSTER × 2 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.4
cryo-EM vitrification conditions Cryogen ETHANE-PROPANE
Resolution 2.90 Å
7O81 Rabbit 80S ribosome colliding in another ribosome stalled by the SARS-CoV-2 pseudoknot Deposited 2021-04-14 Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 80 PDB declaration: 87-meric
Chain Ar 1–152（152 aa）
Non-standard monomer：Yes (specific site not provided by mmCIF) MG MAGNESIUM ION × 349 UNX UNKNOWN LIGAND × 266 ZN ZINC ION × 8 SPD SPERMIDINE × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.4
cryo-EM vitrification conditions Cryogen ETHANE-PROPANE
Resolution 3.10 Å
7OYD Cryo-EM structure of a rabbit 80S ribosome with zebrafish Dap1b Deposited 2021-06-24 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 79 PDB declaration: 83-meric
Chain SS 1–152（152 aa）
Not recorded MG MAGNESIUM ION × 201 ZN ZINC ION × 7 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.6
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 2.30 Å
7SYG Structure of the HCV IRES binding to the 40S ribosomal subunit, closed conformation. Structure 1(delta dII) Deposited 2021-11-25 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 34 PDB declaration: 36-meric
Chain T 1–152（152 aa）
Not recorded ZN ZINC ION × 2 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE-PROPANE；4 second blot time, force 3
Resolution 4.30 Å
7SYH Structure of the HCV IRES binding to the 40S ribosomal subunit, closed conformation. Structure 2(delta dII) Deposited 2021-11-25 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 34 PDB declaration: 36-meric
Chain T 1–152（152 aa）
Not recorded ZN ZINC ION × 2 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE-PROPANE；4 second blot time, force 3
Resolution 4.60 Å
7SYI Structure of the HCV IRES binding to the 40S ribosomal subunit, closed conformation. Structure 3(delta dII) Deposited 2021-11-25 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 34 PDB declaration: 36-meric
Chain T 1–152（152 aa）
Not recorded ZN ZINC ION × 2 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE-PROPANE；4 second blot time, force 3
Resolution 4.50 Å
7SYJ Structure of the HCV IRES binding to the 40S ribosomal subunit, closed conformation. Structure 4(delta dII) Deposited 2021-11-25 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 34 PDB declaration: 36-meric
Chain T 1–152（152 aa）
Not recorded ZN ZINC ION × 2 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE-PROPANE；4 second blot time, force 3
Resolution 4.80 Å
7SYK Structure of the HCV IRES binding to the 40S ribosomal subunit, closed conformation. Structure 5(delta dII) Deposited 2021-11-25 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 34 PDB declaration: 36-meric
Chain T 1–152（152 aa）
Not recorded ZN ZINC ION × 2 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE-PROPANE；4 second blot time, force 3
Resolution 4.20 Å
7SYL Structure of the HCV IRES bound to the 40S ribosomal subunit, closed conformation. Structure 6(delta dII) Deposited 2021-11-25 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 34 PDB declaration: 36-meric
Chain T 1–152（152 aa）
Not recorded ZN ZINC ION × 2 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE-PROPANE；4 second blot time, force 3
Resolution 4.50 Å
7SYM Structure of the HCV IRES bound to the 40S ribosomal subunit, head opening. Structure 7(delta dII) Deposited 2021-11-25 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 34 PDB declaration: 36-meric
Chain T 1–152（152 aa）
Not recorded ZN ZINC ION × 2 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE-PROPANE；4 second blot time, force 3
Resolution 4.80 Å
7SYN Structure of the HCV IRES bound to the 40S ribosomal subunit, head opening. Structure 8(delta dII) Deposited 2021-11-25 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 34 PDB declaration: 36-meric
Chain T 1–152（152 aa）
Not recorded ZN ZINC ION × 2 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE-PROPANE；4 second blot time, force 3
Resolution 4.00 Å
7SYO Structure of the HCV IRES bound to the 40S ribosomal subunit, head open. Structure 9(delta dII) Deposited 2021-11-25 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 34 PDB declaration: 36-meric
Chain T 1–152（152 aa）
Not recorded ZN ZINC ION × 2 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE-PROPANE；4 second blot time, force 3
Resolution 4.60 Å
7SYP Structure of the wt IRES and 40S ribosome binary complex, open conformation. Structure 10(wt) Deposited 2021-11-25 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 34 PDB declaration: 37-meric
Chain T 1–152（152 aa）
Not recorded ZN ZINC ION × 2 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE-PROPANE；4 second blot time, force 3
Resolution 4.00 Å
7SYQ Structure of the wt IRES and 40S ribosome ternary complex, open conformation. Structure 11(wt) Deposited 2021-11-25 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 35 PDB declaration: 37-meric
Chain T 1–152（152 aa）
Not recorded ZN ZINC ION × 2 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE-PROPANE；4 second blot time, force 3
Resolution 3.80 Å
7SYR Structure of the wt IRES eIF2-containing 48S initiation complex, closed conformation. Structure 12(wt). Deposited 2021-11-25 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 36 PDB declaration: 39-meric
Chain T 1–152（152 aa）
Not recorded ZN ZINC ION × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE-PROPANE；4 second blot time, force 3
Resolution 3.60 Å
7SYS Structure of the delta dII IRES eIF2-containing 48S initiation complex, closed conformation. Structure 12(delta dII). Deposited 2021-11-25 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 36 PDB declaration: 39-meric
Chain T 1–152（152 aa）
Not recorded ZN ZINC ION × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE-PROPANE；4 second blot time, force 3
Resolution 3.50 Å
7SYT Structure of the wt IRES w/o eIF2 48S initiation complex, closed conformation. Structure 13(wt) Deposited 2021-11-25 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 34 PDB declaration: 37-meric
Chain T 1–152（152 aa）
Not recorded ZN ZINC ION × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE-PROPANE；4 second blot time, force 3
Resolution 4.40 Å
7SYU Structure of the delta dII IRES w/o eIF2 48S initiation complex, closed conformation. Structure 13(delta dII) Deposited 2021-11-25 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 34 PDB declaration: 37-meric
Chain T 1–152（152 aa）
Not recorded ZN ZINC ION × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE-PROPANE；4 second blot time, force 3
Resolution 4.60 Å
7SYV Structure of the wt IRES eIF5B-containing pre-48S initiation complex, open conformation. Structure 14(wt) Deposited 2021-11-25 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 36 PDB declaration: 39-meric
Chain T 1–152（152 aa）
Not recorded ZN ZINC ION × 2 GTP GUANOSINE-5'-TRIPHOSPHATE × 1 MG MAGNESIUM ION × 1 NA SODIUM ION × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE-PROPANE；4 second blot time, force 3
Resolution 3.90 Å
7SYW Structure of the wt IRES eIF5B-containing 48S initiation complex, closed conformation. Structure 15(wt) Deposited 2021-11-25 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 36 PDB declaration: 39-meric
Chain T 1–152（152 aa）
Not recorded ZN ZINC ION × 1 GTP GUANOSINE-5'-TRIPHOSPHATE × 1 MG MAGNESIUM ION × 1 NA SODIUM ION × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE-PROPANE；4 second blot time, force 3
Resolution 3.70 Å
7SYX Structure of the delta dII IRES eIF5B-containing 48S initiation complex, closed conformation. Structure 15(delta dII) Deposited 2021-11-25 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 36 PDB declaration: 39-meric
Chain T 1–152（152 aa）
Not recorded ZN ZINC ION × 1 MG MAGNESIUM ION × 1 GTP GUANOSINE-5'-TRIPHOSPHATE × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE-PROPANE；4 second blot time, force 3
Resolution 3.70 Å
7TOQ Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein poly-PR Deposited 2022-01-24 Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 78 PDB declaration: 84-meric
Chain AS18 2–145（144 aa）
Not recorded ZN ZINC ION × 4 ELECTRON MICROSCOPY
cryo-EM buffer pH 7
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 3.10 Å
7TOR Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20 Deposited 2022-01-24 Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 79 PDB declaration: 86-meric
Chain AS18 2–145（144 aa）
Not recorded ZN ZINC ION × 6 ELECTRON MICROSCOPY
cryo-EM buffer pH 7
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 2.90 Å
7UCJ Mammalian 80S translation initiation complex with mRNA and Harringtonine Deposited 2022-03-16 Different construct Different oligomeric state Different ligand/ion Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 73 PDB declaration: 79-meric
Chain SS 2–145（144 aa）
Not recorded MG MAGNESIUM ION × 296 MQ6 Harringtonine × 1 ZN ZINC ION × 7 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 3.10 Å
7UCK 80S translation initiation complex with ac4c(-1) mRNA and Harringtonine Deposited 2022-03-16 Different construct Different oligomeric state Different ligand/ion Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 73 PDB declaration: 79-meric
Chain SS 2–145（144 aa）
Not recorded MG MAGNESIUM ION × 297 MQ6 Harringtonine × 1 ZN ZINC ION × 7 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 2.80 Å
8BTK Structure of the TRAP complex with the Sec translocon and a translating ribosome Deposited 2022-11-29 Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Insufficient information Heteromer；Protein × 86 PDB declaration: 92-meric
Chain Ar 1–152（152 aa）
Non-standard monomer：Yes (specific site not provided by mmCIF) SPD SPERMIDINE × 30 SPM SPERMINE × 3 MG MAGNESIUM ION × 750 GTP GUANOSINE-5'-TRIPHOSPHATE × 1 AAC ACETYLAMINO-ACETIC ACID × 1 ZN ZINC ION × 8 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE-PROPANE；3.5 uL of sample was incubated on the grid for 60 seconds at 4*C and 100% humidity before being blotted and plunged into liquid ethane/propane mix cooled to liquid nitrogen temperature
Resolution 3.50 Å
8P03 48S late-stage initiation complex with m6A mRNA Deposited 2023-05-09 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 37 PDB declaration: 40-meric
Chain U 1–152（152 aa）
Not recorded MG MAGNESIUM ION × 178 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.4
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 3.04 Å
8P09 48S late-stage initiation complex with non methylated mRNA Deposited 2023-05-09 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 37 PDB declaration: 40-meric
Chain U 1–152（152 aa）
Not recorded MG MAGNESIUM ION × 230 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.4
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 3.30 Å
8P2K Ternary complex of translating ribosome, NAC and METAP1 Deposited 2023-05-16 Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 82 PDB declaration: 88-meric
Chain Ar 1–152（152 aa）
Non-standard monomer：Yes (specific site not provided by mmCIF) N ANY 5'-MONOPHOSPHATE NUCLEOTIDE × 73 SPD SPERMIDINE × 30 SPM SPERMINE × 3 MG MAGNESIUM ION × 420 UNX UNKNOWN LIGAND × 312 GTP GUANOSINE-5'-TRIPHOSPHATE × 1 AAC ACETYLAMINO-ACETIC ACID × 1 ZN ZINC ION × 8 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.6
cryo-EM vitrification conditions Cryogen ETHANE-PROPANE
Resolution 2.90 Å
8Q87 Structure of the G. gallus 80S rotated ribosome in complex with eEF2 and SERBP1 Deposited 2023-08-18 Different oligomeric state Different ligand/ion Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 80 PDB declaration: 85-meric
Chain Ar 1–152（152 aa）
Not recorded MG MAGNESIUM ION × 492 ZN ZINC ION × 8 GDP GUANOSINE-5'-DIPHOSPHATE × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 2.40 Å
8SCB Terminating ribosome with SRI-41315 Deposited 2023-04-05 Different oligomeric state Different ligand/ion Assembly 1 Protein–RNA Heteromer；Protein × 80 PDB declaration: 87-meric
Chain SS 1–152（152 aa）
Not recorded MG MAGNESIUM ION × 312 ZN ZINC ION × 8 ZVM (2S,4aS)-2-cyclobutyl-10-methyl-3-phenyl-2,10-dihydropyrimido[4,5-b]quinoline-4,5(3H,4aH)-dione × 1 SF4 IRON/SULFUR CLUSTER × 2 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 2.50 Å
8SUP Structure of the 48S translation initiation complex assembled on the encephalomyocarditis virus IRES Deposited 2023-05-12 Different oligomeric state Different ligand/ion Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 44 PDB declaration: 47-meric
Chain T 1–152（152 aa）
Not recorded ZN ZINC ION × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 3.10 Å
8VFT Translating 80S rabbit ribosome stalled by emetine with eEF2 Deposited 2023-12-22 Different oligomeric state Different ligand/ion Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 78 PDB declaration: 85-meric
Chain SS 1–152（152 aa）
Not recorded MG MAGNESIUM ION × 276 ZN ZINC ION × 8 GDP GUANOSINE-5'-DIPHOSPHATE × 1 34G emetine × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 3.30 Å
8VVP Codon sampling state obtained from Anisomycin-treated mammalian ribosomes Deposited 2024-01-31 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 80 PDB declaration: 88-meric
Chain SB 1–152（152 aa）
Not recorded MG MAGNESIUM ION × 260 ZN ZINC ION × 8 5GP GUANOSINE-5'-MONOPHOSPHATE × 1 ANM ANISOMYCIN × 1 SPD SPERMIDINE × 6 SPM SPERMINE × 2 K POTASSIUM ION × 1 GTP GUANOSINE-5'-TRIPHOSPHATE × 1 SER SERINE × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5；20 mM HEPES-KOH, pH 7.5, 100 mM KCl, 1.5 mM MgCl2, 0.5 mM Spermidine, 0.04 mM Spermine, 1 mM DTT
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 2.90 Å
8VVQ Codon sampling state of elongation inhibitor-treated mammalian ribosomes obtained from merged datasets Deposited 2024-01-31 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 80 PDB declaration: 88-meric
Chain SB 1–152（152 aa）
Not recorded MG MAGNESIUM ION × 290 ZN ZINC ION × 8 5GP GUANOSINE-5'-MONOPHOSPHATE × 1 ANM ANISOMYCIN × 1 SPD SPERMIDINE × 1 K POTASSIUM ION × 1 GTP GUANOSINE-5'-TRIPHOSPHATE × 1 SER SERINE × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5；20 mM HEPES-KOH, pH 7.5, 100 mM KCl, 1.5 mM MgCl2, 0.5 mM Spermidine, 0.04 mM Spermine, 1 mM DTT
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 2.70 Å
8VVR Post-decoding/Post-hydrolysis state obtained from Anisomycin-treated mammalian ribosomes Deposited 2024-01-31 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 80 PDB declaration: 88-meric
Chain SB 1–152（152 aa）
Not recorded MG MAGNESIUM ION × 204 ZN ZINC ION × 8 5GP GUANOSINE-5'-MONOPHOSPHATE × 1 ANM ANISOMYCIN × 1 SPD SPERMIDINE × 3 K POTASSIUM ION × 1 SER SERINE × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5；20 mM HEPES-KOH, pH 7.5, 100 mM KCl, 1.5 mM MgCl2, 0.5 mM Spermidine, 0.04 mM Spermine, 1 mM DTT
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 3.10 Å
8VVS Post-decoding post-hydrolysis state obtained from merged datasets of elongation inhibitor-treated mammalian ribosomes Deposited 2024-01-31 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 80 PDB declaration: 88-meric
Chain SB 1–152（152 aa）
Not recorded MG MAGNESIUM ION × 236 ZN ZINC ION × 8 5GP GUANOSINE-5'-MONOPHOSPHATE × 1 ANM ANISOMYCIN × 1 SPD SPERMIDINE × 4 K POTASSIUM ION × 1 SER SERINE × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5；20 mM HEPES-KOH, pH 7.5, 100 mM KCl, 1.5 mM MgCl2, 0.5 mM Spermidine, 0.04 mM Spermine, 1 mM DTT
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 3.10 Å
8VVT Mammalian ribosomes bound to Anisomycin in the rotated conformation Deposited 2024-01-31 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 80 PDB declaration: 84-meric
Chain SB 1–152（152 aa）
Not recorded MG MAGNESIUM ION × 144 ANM ANISOMYCIN × 1 SPD SPERMIDINE × 1 ZN ZINC ION × 8 GDP GUANOSINE-5'-DIPHOSPHATE × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5；20 mM HEPES-KOH, pH 7.5, 100 mM KCl, 1.5 mM MgCl2, 0.5 mM Spermidine, 0.04 mM Spermine, 1 mM DTT
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 2.90 Å
8VVU Anisomycin-bound mammalian ribosome with partially accommodated A-site tRNA Deposited 2024-01-31 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 78 PDB declaration: 86-meric
Chain SB 1–152（152 aa）
Not recorded MG MAGNESIUM ION × 102 ZN ZINC ION × 8 ANM ANISOMYCIN × 1 SPD SPERMIDINE × 1 SER SERINE × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5；20 mM HEPES-KOH, pH 7.5, 100 mM KCl, 1.5 mM MgCl2, 0.5 mM Spermidine, 0.04 mM Spermine, 1 mM DTT
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 3.80 Å
8VVV Mammalian ribosomes bound to Anisomycin in the nonrotated conformation Deposited 2024-01-31 Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 79 PDB declaration: 83-meric
Chain SS 2–145（144 aa）
Not recorded MG MAGNESIUM ION × 294 ZN ZINC ION × 8 GDP GUANOSINE-5'-DIPHOSPHATE × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5；20 mM HEPES-KOH, pH 7.5, 100 mM KCl, 1.5 mM MgCl2, 0.5 mM Spermidine, 0.04 mM Spermine, 1 mM DTT
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 3.10 Å
9BDL 80S ribosome with angiogenin Deposited 2024-04-12 Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 75 PDB declaration: 82-meric
Chain AS18 2–145（144 aa）
Not recorded No recorded non-water small molecule ELECTRON MICROSCOPY
cryo-EM buffer pH 7
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 2.80 Å
9BDN 80S ribosome with angiogenin and tRNAAla Deposited 2024-04-12 Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 77 PDB declaration: 85-meric
Chain AS18 2–145（144 aa）
Not recorded No recorded non-water small molecule ELECTRON MICROSCOPY
cryo-EM buffer pH 7
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 3.10 Å
9BDP 80S ribosome bound with angiogenin and complex of eEF1A and Ala-tRNAAla Deposited 2024-04-12 Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 78 PDB declaration: 86-meric
Chain AS18 2–145（144 aa）
Not recorded No recorded non-water small molecule ELECTRON MICROSCOPY
cryo-EM buffer pH 7
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 3.70 Å
9C8K Rabbit Hemorrhagic Disease Virus reinitiation stimulating TURBS RNA bound to rabbit ribosome Deposited 2024-06-12 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 33 PDB declaration: 35-meric
Chain S 1–152（152 aa）
Not recorded MG MAGNESIUM ION × 74 ZN ZINC ION × 2 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5；20 mM Tris-HCl pH 7.5, 2 mM MgOAc2, 150 mM KCl
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 3.10 Å
9CPA Structure of a Mammalian DHX29-bound 43S Pre-initiation Complex Deposited 2024-07-18 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 49 PDB declaration: 51-meric
Chain U 1–152（152 aa）
Not recorded No recorded non-water small molecule ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE-PROPANE
Resolution 6.00 Å
9F1B Mammalian ternary complex of a translating 80S ribosome, NAC and NatA/E Deposited 2024-04-18 Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Insufficient information Heteromer；Protein × 83 PDB declaration: 89-meric
Chain Ar 2–152（151 aa）
Non-standard monomer：Yes (specific site not provided by mmCIF) MG MAGNESIUM ION × 420 ZN ZINC ION × 8 UNX UNKNOWN LIGAND × 306 IHP INOSITOL HEXAKISPHOSPHATE × 1 SPD SPERMIDINE × 30 SPM SPERMINE × 3 GTP GUANOSINE-5'-TRIPHOSPHATE × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.4
cryo-EM vitrification conditions Cryogen ETHANE-PROPANE
Resolution 3.01 Å
9F1C Mammalian quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatA/E Deposited 2024-04-18 Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Insufficient information Heteromer；Protein × 84 PDB declaration: 90-meric
Chain Ar 2–152（151 aa）
Non-standard monomer：Yes (specific site not provided by mmCIF) UNX UNKNOWN LIGAND × 277 MG MAGNESIUM ION × 420 GTP GUANOSINE-5'-TRIPHOSPHATE × 1 SPD SPERMIDINE × 30 SPM SPERMINE × 3 ZN ZINC ION × 8 IHP INOSITOL HEXAKISPHOSPHATE × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.4
cryo-EM vitrification conditions Cryogen ETHANE-PROPANE
Resolution 3.78 Å
9F1D Mammalian quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatA/E-HYPK Deposited 2024-04-18 Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 85 PDB declaration: 91-meric
Chain Ar 2–152（151 aa）
Non-standard monomer：Yes (specific site not provided by mmCIF) UNX UNKNOWN LIGAND × 295 SPD SPERMIDINE × 30 MG MAGNESIUM ION × 420 SPM SPERMINE × 3 GTP GUANOSINE-5'-TRIPHOSPHATE × 1 IHP INOSITOL HEXAKISPHOSPHATE × 1 ZN ZINC ION × 8 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.4
cryo-EM vitrification conditions Cryogen ETHANE-PROPANE
Resolution 3.26 Å
9H6Y Late-stage 48S Initiation Complex (LS48S IC) guided by the trans-RNA Deposited 2024-10-25 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 39 PDB declaration: 42-meric
Chain U 1–152（152 aa）
Not recorded SF4 IRON/SULFUR CLUSTER × 2 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.4；10 mM HEPES-KOH pH 7.4, 5 mM Mg(OAc)2, 50 mM KOAc, 10 mM NH4Cl, 2 mM DTT and Roche cOmplete protease inhibitor cocktail
cryo-EM vitrification conditions Cryogen ETHANE；The sample was incubated on the grid for 30 s and then blotted with filter paper from both sides for 1.5 s with the blot force 5
Resolution 2.90 Å
9H74 Late-stage 48S Initiation Complex with eIF3 (LS48S-eIF3 IC) guided by the trans-RNA Deposited 2024-10-25 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 48 PDB declaration: 51-meric
Chain U 1–152（152 aa）
Not recorded SF4 IRON/SULFUR CLUSTER × 2 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.4；10 mM HEPES-KOH pH 7.4, 5 mM Mg(OAc)2, 50 mM KOAc, 10 mM NH4Cl, 2 mM DTT and Roche cOmplete protease inhibitor cocktail
cryo-EM vitrification conditions Cryogen ETHANE；The sample was incubated on the grid for 30 s and then blotted with filter paper from both sides for 1.5 s with the blot force 5
Resolution 2.90 Å
9MR4 NAC: Ribosome nascent chain complex(Oxa1L) Deposited 2025-01-06 Different oligomeric state Different ligand/ion Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 78 PDB declaration: 84-meric
Chain II 1–152（152 aa）
Not recorded ZN ZINC ION × 6 MG MAGNESIUM ION × 285 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 2.65 Å
9NDP Structure of stalled ribosome and nascent chain in complex with NMT2 and NAC Deposited 2025-02-18 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Insufficient information Heteromer；Protein × 81 PDB declaration: 87-meric
Chain II 1–152（152 aa）
Not recorded MG MAGNESIUM ION × 296 ZN ZINC ION × 6 COA COENZYME A × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.7
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 2.82 Å
9OGY Megrivirus E 3' internal ribosome entry site (IRES) RNA core region bound to rabbit ribosome Deposited 2025-05-02 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 34 PDB declaration: 36-meric
Chain T 1–152（152 aa）
Not recorded ZN ZINC ION × 2 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5；20 mM Tris-HCl pH 7.5, 2 mM MgOAc2, 150 mM KCl
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 3.28 Å
9Q7Q ABCE1-eRF1-RNC-AMD1C Deposited 2025-08-25 Different oligomeric state Different ligand/ion Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 80 PDB declaration: 86-meric
Chain II 1–152（152 aa）
Not recorded MG MAGNESIUM ION × 291 ZN ZINC ION × 6 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 2.86 Å
9QQA Ternary complex of translating ribosome, NAC and NMT1 Deposited 2025-03-31 Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 81 PDB declaration: 86-meric
Chain Ar 2–152（151 aa）
Non-standard monomer：Yes (specific site not provided by mmCIF) MG MAGNESIUM ION × 407 UNX UNKNOWN LIGAND × 187 SPD SPERMIDINE × 30 SPM SPERMINE × 3 ZN ZINC ION × 8 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.6
cryo-EM vitrification conditions Cryogen ETHANE-PROPANE
Resolution 2.80 Å
9QQB Quaternary complex of a translating ribosome, NAC, NMT1, and NatA Deposited 2025-03-31 Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 84 PDB declaration: 89-meric
Chain Ar 2–152（151 aa）
Non-standard monomer：Yes (specific site not provided by mmCIF) SPD SPERMIDINE × 30 SPM SPERMINE × 3 MG MAGNESIUM ION × 412 UNX UNKNOWN LIGAND × 168 ZN ZINC ION × 8 IHP INOSITOL HEXAKISPHOSPHATE × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.6
cryo-EM vitrification conditions Cryogen ETHANE-PROPANE
Resolution 3.43 Å
9RHU Rabbit 80S ribosome in complex with eRF1-AAQ, stalled at the Stop codon in mutated F2A sequence Deposited 2025-06-10 Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 81 PDB declaration: 88-meric
Chain d1 2–152（151 aa）
Non-standard monomer：Yes (specific site not provided by mmCIF) MG MAGNESIUM ION × 367 ZN ZINC ION × 8 K POTASSIUM ION × 37 SPD SPERMIDINE × 2 GTP GUANOSINE-5'-TRIPHOSPHATE × 1 SF4 IRON/SULFUR CLUSTER × 2 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.4
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 2.65 Å
9UZK EMCV IRES captured on mammalian 40S with initiator tRNA Deposited 2025-05-16 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 34 PDB declaration: 37-meric
Chain U 1–152（152 aa）
Not recorded No recorded non-water small molecule ELECTRON MICROSCOPY
cryo-EM buffer pH 7.4；20mM HEPES, 150mM KOAc, 2mM MgCl2, 1mM DTT, 0.5mM Spermidine, 6mM GMP-PnP
cryo-EM vitrification conditions Cryogen ETHANE-PROPANE
Resolution 4.60 Å
9UZL EMCV IRES captured on mammalian 40S ribosome with initiator tRNA and eIF2 Deposited 2025-05-16 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 36 PDB declaration: 39-meric
Chain U 1–152（152 aa）
Not recorded No recorded non-water small molecule ELECTRON MICROSCOPY
cryo-EM buffer pH 7.4；20mM HEPES, 150mM KOAc, 2mM MgCl2, 1mM DTT, 0.5mM Spermidine, 6mM GMP-PnP
cryo-EM vitrification conditions Cryogen ETHANE-PROPANE
Resolution 5.01 Å
9UZM 40S ribosome without initiation factors Deposited 2025-05-16 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 34 PDB declaration: 35-meric
Chain U 1–152（152 aa）
Not recorded No recorded non-water small molecule ELECTRON MICROSCOPY
cryo-EM buffer pH 7.4；20mM HEPES, 150mM KOAc, 2mM MgCl2, 1mM DTT, 0.5mM Spermidine, 6mM GMP-PnP
cryo-EM vitrification conditions Cryogen ETHANE-PROPANE
Resolution 4.50 Å
9YPG GTPBP1*GCP*Phe-tRNA*ribosome in the GTPase activation-like state, Structure III Deposited 2025-10-14 Different oligomeric state Different ligand/ion Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 76 PDB declaration: 84-meric
Chain SS 1–152（152 aa）
Not recorded SPD SPERMIDINE × 1 ZN ZINC ION × 6 GTP GUANOSINE-5'-TRIPHOSPHATE × 1 PHE PHENYLALANINE × 1 ATP ADENOSINE-5'-TRIPHOSPHATE × 2 MET METHIONINE × 1 K POTASSIUM ION × 1 GCP PHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTER × 1 MG MAGNESIUM ION × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 3.00 Å
9YPO GTPBP1*GCP*Phe-tRNA*ribosome in the open state, Structure IIa Deposited 2025-10-14 Different oligomeric state Different ligand/ion Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 76 PDB declaration: 84-meric
Chain SS 1–152（152 aa）
Not recorded SPD SPERMIDINE × 1 ZN ZINC ION × 6 GTP GUANOSINE-5'-TRIPHOSPHATE × 1 PHE PHENYLALANINE × 1 ATP ADENOSINE-5'-TRIPHOSPHATE × 2 MET METHIONINE × 1 GCP PHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTER × 1 MG MAGNESIUM ION × 1 K POTASSIUM ION × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 3.00 Å
9YPS GTPBP1*GCP*Phe-tRNA*ribosome in the open state, Structure IIb Deposited 2025-10-14 Different oligomeric state Different ligand/ion Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 76 PDB declaration: 84-meric
Chain SS 1–152（152 aa）
Not recorded SPD SPERMIDINE × 1 ZN ZINC ION × 6 GTP GUANOSINE-5'-TRIPHOSPHATE × 1 PHE PHENYLALANINE × 1 ATP ADENOSINE-5'-TRIPHOSPHATE × 2 MET METHIONINE × 1 K POTASSIUM ION × 1 GCP PHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTER × 1 MG MAGNESIUM ION × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 3.00 Å
9YPT GTPBP1*GCP*Phe-tRNA*ribosome in the open state, Structure IIc Deposited 2025-10-14 Different oligomeric state Different ligand/ion Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 76 PDB declaration: 84-meric
Chain SS 1–152（152 aa）
Not recorded SPD SPERMIDINE × 1 ZN ZINC ION × 6 GTP GUANOSINE-5'-TRIPHOSPHATE × 1 PHE PHENYLALANINE × 1 ATP ADENOSINE-5'-TRIPHOSPHATE × 2 MET METHIONINE × 1 GCP PHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTER × 1 MG MAGNESIUM ION × 1 K POTASSIUM ION × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 3.10 Å
9YPV GTPBP1*GCP*Phe-tRNA*ribosome in the open state, Structure IId Deposited 2025-10-14 Different oligomeric state Different ligand/ion Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 76 PDB declaration: 84-meric
Chain SS 1–152（152 aa）
Not recorded SPD SPERMIDINE × 1 ZN ZINC ION × 6 GTP GUANOSINE-5'-TRIPHOSPHATE × 1 PHE PHENYLALANINE × 1 ATP ADENOSINE-5'-TRIPHOSPHATE × 2 MET METHIONINE × 1 K POTASSIUM ION × 1 GCP PHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTER × 1 MG MAGNESIUM ION × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 3.00 Å
9YPW GTPBP1*GDP*Phe-tRNA*ribosome in the post-GTP hydrolysis state, Structure IV Deposited 2025-10-14 Different oligomeric state Different ligand/ion Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 76 PDB declaration: 84-meric
Chain SS 1–152（152 aa）
Not recorded SPD SPERMIDINE × 1 ZN ZINC ION × 6 GTP GUANOSINE-5'-TRIPHOSPHATE × 1 PHE PHENYLALANINE × 1 ATP ADENOSINE-5'-TRIPHOSPHATE × 2 MET METHIONINE × 1 K POTASSIUM ION × 1 GDP GUANOSINE-5'-DIPHOSPHATE × 1 MG MAGNESIUM ION × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 2.90 Å
9YPY Ribosome with accommodated A-site tRNA, Structure V Deposited 2025-10-14 Different oligomeric state Different ligand/ion Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 75 PDB declaration: 83-meric
Chain SS 1–152（152 aa）
Not recorded SPD SPERMIDINE × 1 ZN ZINC ION × 6 GTP GUANOSINE-5'-TRIPHOSPHATE × 1 PHE PHENYLALANINE × 1 ATP ADENOSINE-5'-TRIPHOSPHATE × 2 MET METHIONINE × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 3.00 Å
9YPZ Vacant ribosome with P-site tRNA, substate 1, Structure Ia Deposited 2025-10-14 Different oligomeric state Different ligand/ion Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 75 PDB declaration: 82-meric
Chain SS 1–152（152 aa）
Not recorded SPD SPERMIDINE × 1 ZN ZINC ION × 6 ATP ADENOSINE-5'-TRIPHOSPHATE × 2 MET METHIONINE × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 2.90 Å
9YQ0 Vacant ribosome with P-site tRNA, substate 2, Structure Ib Deposited 2025-10-14 Different oligomeric state Different ligand/ion Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 75 PDB declaration: 82-meric
Chain SS 1–152（152 aa）
Not recorded SPD SPERMIDINE × 1 ZN ZINC ION × 6 ATP ADENOSINE-5'-TRIPHOSPHATE × 2 MET METHIONINE × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 2.90 Å
9YQ1 Vacant ribosome with P-site tRNA, substate 3, Structure Ic Deposited 2025-10-14 Different oligomeric state Different ligand/ion Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 75 PDB declaration: 82-meric
Chain SS 1–152（152 aa）
Not recorded SPD SPERMIDINE × 1 ZN ZINC ION × 6 ATP ADENOSINE-5'-TRIPHOSPHATE × 2 MET METHIONINE × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 2.90 Å

116 other PDB entries and 116 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name G1TPG3_RABIT
Isoform —
PDB entities 75
Chains and sequence ranges Author chain Ar； PDBConstruct 1–152； UniProt 1–152

40S ribosomal protein S25

OrganismNot specified

UniProt A0A8V1A7V4

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein–RNA Heteromer Protein × 75 RNA 5 PDB declaration: 80-meric（80） Consistent with all polymer counts Chain Ay； UniProt 399–523 Not recorded 28S rRNA × 1 5.8S rRNA × 1 5S rRNA × 1 60S ribosomal protein L41 × 1 （A0A087WNH4） 60S ribosomal protein L8 × 1 （F1NIX0） Ribosomal protein uL3 × 1 （Q5ZJZ2） 60S ribosomal protein L4 C-terminal domain-containing protein × 1 （Q5ZII1） Large ribosomal subunit protein uL18 × 1 （P22451） 60S ribosomal protein L6 × 1 （Q8UWG7） Large ribosomal subunit protein uL30 × 1 （Q5ZJ56） Large ribosomal subunit protein eL8 × 1 （P32429） 60S ribosomal protein L9 × 1 （A0A1D5NVI1） Large ribosomal subunit protein uL16 × 1 （Q08200） 60S ribosomal protein L11 × 1 （A0A1D5P3B1） Large ribosomal subunit protein eL13 × 1 （P41125） 60S ribosomal protein L14 × 1 （Q98TF9） Ribosomal protein L15 × 1 （F1NQG5） Ribosomal protein uL13 × 1 60S ribosomal protein L17 × 1 （A0A1D5PR40） Ribosomal protein L18 × 1 Ribosomal protein L19 × 1 （Q5ZKK8） 60S ribosomal protein L18a × 1 60S ribosomal protein L21 × 1 （R4GIQ2） Large ribosomal subunit protein eL22 × 1 （Q98TF8） Large ribosomal subunit protein uL14 × 1 Ribosomal protein L24 × 1 （A0A8V0XRE7） Ribosomal protein uL23 × 1 Ribosomal protein L26 like 1 × 1 （F2Z4K6） Large ribosomal subunit protein eL27 × 1 （P61355） Ribosomal protein uL15 × 1 60S ribosomal protein L29 × 1 （A0A1L1RNZ2） Large ribosomal subunit protein eL30 × 1 （P67883） 60S ribosomal protein L31 × 1 （A0A1L1RT94） Ribosomal protein L32 × 1 （E1BVB1） 60S ribosomal protein L35a × 1 （A0A8V0YS49） 60S ribosomal protein L34 × 1 （A0A1L1S0X5） Large ribosomal subunit protein uL29 × 1 （Q98TF7） Large ribosomal subunit protein eL36 × 1 （Q98TF6） Ribosomal protein L37 × 1 （E1C810） 60S ribosomal protein L38 × 1 （E1BU66） Large ribosomal subunit protein eL39 × 1 （Q98TF5） Ubiquitin-60S ribosomal protein L40 × 1 （O42388） Ribosomal protein L36a like × 1 （A0A8V0YUB1） Large ribosomal subunit protein eL43 × 1 （P32046） 60S ribosomal protein L28 × 1 （Q5F346） 18S rRNA × 1 Small ribosomal subunit protein eS1 × 1 40S ribosomal protein S27 × 1 （A0A3Q2TV39） 40S ribosomal protein S28 × 1 （A0A3Q2U825） 40S ribosomal protein S2 × 1 （A0A8V0Z891） Small ribosomal subunit protein eS4 × 1 （P47836） Ribosomal protein eS30 × 1 40S ribosomal protein S26 × 1 （Q5ZM66） Small ribosomal subunit protein eS6 × 1 （P47838） 40S ribosomal protein S7 × 1 （F1NN16） 40S ribosomal protein S8 × 1 （F1NB02） 40S ribosomal protein S9 × 1 （B7NZS8） 40S ribosomal protein S11 × 1 （Q98TH5） Small ribosomal subunit protein uS15 × 1 （Q6ITC7） Ribosomal protein S14 × 1 （Q5ZHW8） 40S ribosomal protein S20 × 1 （F1NH93） Small ribosomal subunit protein eS21 × 1 40S ribosomal protein S15a × 1 （A0A3Q3A7P6） Small ribosomal subunit protein uS12 × 1 40S ribosomal protein S24 × 1 （F1NF89） Small ribosomal subunit protein uS2 × 1 （P50890） Ribosomal protein S16 × 1 （R4GGJ0） Ubiquitin × 1 （P79781） Ribosomal protein S5 × 1 （G1TFM5） Small ribosomal subunit protein RACK1 × 1 （P63247） 40S ribosomal protein S29 × 1 （A0A8V0Z8V3） Ribosomal protein S10 × 1 （E1C4N0） Small ribosomal subunit protein eS12 × 1 （P84175） Small ribosomal subunit protein uS19 × 1 （P62846） 40S ribosomal protein S18 × 1 （G1TPG3） 40S ribosomal protein S19 × 1 DNA-(apurinic or apyrimidinic site) lyase × 1 （F1NPA9） Phe tRNA × 1 Small ribosomal subunit protein eS17 × 1 （P08636） MG MAGNESIUM ION × 494 ZN ZINC ION × 7 ELECTRON MICROSCOPY cryo-EM buffer：pH 7.5 cryo-EM vitrification conditions：Cryogen ETHANE Resolution 2.50 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

Other PDB Difference from Current Entry 8Q7Z Assembly / Oligomeric State Construct Mutations and Modifications Ligands, Ions and Non-polymers Method and Experimental Conditions Structure Quality
8Q87 Structure of the G. gallus 80S rotated ribosome in complex with eEF2 and SERBP1 Deposited 2023-08-18 Different oligomeric state Different ligand/ion Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 80 PDB declaration: 85-meric
Chain Ay 399–523（125 aa）
Not recorded MG MAGNESIUM ION × 492 ZN ZINC ION × 8 GDP GUANOSINE-5'-DIPHOSPHATE × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 2.40 Å

1 other PDB entries and 1 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name A0A8V1A7V4_CHICK
Isoform —
PDB entities 77
Chains and sequence ranges Author chain Ay； PDBConstruct 1–125； UniProt 399–523

DNA-(apurinic or apyrimidinic site) lyase

OrganismNot specified

UniProt F1NPA9

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein–RNA Heteromer Protein × 75 RNA 5 PDB declaration: 80-meric（80） Consistent with all polymer counts Chain Ac； UniProt 1–243 Not recorded 28S rRNA × 1 5.8S rRNA × 1 5S rRNA × 1 60S ribosomal protein L41 × 1 （A0A087WNH4） 60S ribosomal protein L8 × 1 （F1NIX0） Ribosomal protein uL3 × 1 （Q5ZJZ2） 60S ribosomal protein L4 C-terminal domain-containing protein × 1 （Q5ZII1） Large ribosomal subunit protein uL18 × 1 （P22451） 60S ribosomal protein L6 × 1 （Q8UWG7） Large ribosomal subunit protein uL30 × 1 （Q5ZJ56） Large ribosomal subunit protein eL8 × 1 （P32429） 60S ribosomal protein L9 × 1 （A0A1D5NVI1） Large ribosomal subunit protein uL16 × 1 （Q08200） 60S ribosomal protein L11 × 1 （A0A1D5P3B1） Large ribosomal subunit protein eL13 × 1 （P41125） 60S ribosomal protein L14 × 1 （Q98TF9） Ribosomal protein L15 × 1 （F1NQG5） Ribosomal protein uL13 × 1 60S ribosomal protein L17 × 1 （A0A1D5PR40） Ribosomal protein L18 × 1 Ribosomal protein L19 × 1 （Q5ZKK8） 60S ribosomal protein L18a × 1 60S ribosomal protein L21 × 1 （R4GIQ2） Large ribosomal subunit protein eL22 × 1 （Q98TF8） Large ribosomal subunit protein uL14 × 1 Ribosomal protein L24 × 1 （A0A8V0XRE7） Ribosomal protein uL23 × 1 Ribosomal protein L26 like 1 × 1 （F2Z4K6） Large ribosomal subunit protein eL27 × 1 （P61355） Ribosomal protein uL15 × 1 60S ribosomal protein L29 × 1 （A0A1L1RNZ2） Large ribosomal subunit protein eL30 × 1 （P67883） 60S ribosomal protein L31 × 1 （A0A1L1RT94） Ribosomal protein L32 × 1 （E1BVB1） 60S ribosomal protein L35a × 1 （A0A8V0YS49） 60S ribosomal protein L34 × 1 （A0A1L1S0X5） Large ribosomal subunit protein uL29 × 1 （Q98TF7） Large ribosomal subunit protein eL36 × 1 （Q98TF6） Ribosomal protein L37 × 1 （E1C810） 60S ribosomal protein L38 × 1 （E1BU66） Large ribosomal subunit protein eL39 × 1 （Q98TF5） Ubiquitin-60S ribosomal protein L40 × 1 （O42388） Ribosomal protein L36a like × 1 （A0A8V0YUB1） Large ribosomal subunit protein eL43 × 1 （P32046） 60S ribosomal protein L28 × 1 （Q5F346） 18S rRNA × 1 Small ribosomal subunit protein eS1 × 1 40S ribosomal protein S27 × 1 （A0A3Q2TV39） 40S ribosomal protein S28 × 1 （A0A3Q2U825） 40S ribosomal protein S2 × 1 （A0A8V0Z891） Small ribosomal subunit protein eS4 × 1 （P47836） Ribosomal protein eS30 × 1 40S ribosomal protein S26 × 1 （Q5ZM66） Small ribosomal subunit protein eS6 × 1 （P47838） 40S ribosomal protein S7 × 1 （F1NN16） 40S ribosomal protein S8 × 1 （F1NB02） 40S ribosomal protein S9 × 1 （B7NZS8） 40S ribosomal protein S11 × 1 （Q98TH5） Small ribosomal subunit protein uS15 × 1 （Q6ITC7） Ribosomal protein S14 × 1 （Q5ZHW8） 40S ribosomal protein S20 × 1 （F1NH93） Small ribosomal subunit protein eS21 × 1 40S ribosomal protein S15a × 1 （A0A3Q3A7P6） Small ribosomal subunit protein uS12 × 1 40S ribosomal protein S24 × 1 （F1NF89） Small ribosomal subunit protein uS2 × 1 （P50890） Ribosomal protein S16 × 1 （R4GGJ0） Ubiquitin × 1 （P79781） Ribosomal protein S5 × 1 （G1TFM5） Small ribosomal subunit protein RACK1 × 1 （P63247） 40S ribosomal protein S29 × 1 （A0A8V0Z8V3） Ribosomal protein S10 × 1 （E1C4N0） Small ribosomal subunit protein eS12 × 1 （P84175） Small ribosomal subunit protein uS19 × 1 （P62846） 40S ribosomal protein S18 × 1 （G1TPG3） 40S ribosomal protein S19 × 1 40S ribosomal protein S25 × 1 （A0A8V1A7V4） Phe tRNA × 1 Small ribosomal subunit protein eS17 × 1 （P08636） MG MAGNESIUM ION × 494 ZN ZINC ION × 7 ELECTRON MICROSCOPY cryo-EM buffer：pH 7.5 cryo-EM vitrification conditions：Cryogen ETHANE Resolution 2.50 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

Other PDB Difference from Current Entry 8Q7Z Assembly / Oligomeric State Construct Mutations and Modifications Ligands, Ions and Non-polymers Method and Experimental Conditions Structure Quality
8Q87 Structure of the G. gallus 80S rotated ribosome in complex with eEF2 and SERBP1 Deposited 2023-08-18 Different oligomeric state Different ligand/ion Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 80 PDB declaration: 85-meric
Chain Ac 1–243（243 aa）
Not recorded MG MAGNESIUM ION × 492 ZN ZINC ION × 8 GDP GUANOSINE-5'-DIPHOSPHATE × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 2.40 Å

1 other PDB entries and 1 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name F1NPA9_CHICK
Isoform —
PDB entities 78
Chains and sequence ranges Author chain Ac； PDBConstruct 1–243； UniProt 1–243

Small ribosomal subunit protein eS17

OrganismNot specified

UniProt P08636

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein–RNA Heteromer Protein × 75 RNA 5 PDB declaration: 80-meric（80） Consistent with all polymer counts Chain Aq； UniProt 1–135 Not recorded 28S rRNA × 1 5.8S rRNA × 1 5S rRNA × 1 60S ribosomal protein L41 × 1 （A0A087WNH4） 60S ribosomal protein L8 × 1 （F1NIX0） Ribosomal protein uL3 × 1 （Q5ZJZ2） 60S ribosomal protein L4 C-terminal domain-containing protein × 1 （Q5ZII1） Large ribosomal subunit protein uL18 × 1 （P22451） 60S ribosomal protein L6 × 1 （Q8UWG7） Large ribosomal subunit protein uL30 × 1 （Q5ZJ56） Large ribosomal subunit protein eL8 × 1 （P32429） 60S ribosomal protein L9 × 1 （A0A1D5NVI1） Large ribosomal subunit protein uL16 × 1 （Q08200） 60S ribosomal protein L11 × 1 （A0A1D5P3B1） Large ribosomal subunit protein eL13 × 1 （P41125） 60S ribosomal protein L14 × 1 （Q98TF9） Ribosomal protein L15 × 1 （F1NQG5） Ribosomal protein uL13 × 1 60S ribosomal protein L17 × 1 （A0A1D5PR40） Ribosomal protein L18 × 1 Ribosomal protein L19 × 1 （Q5ZKK8） 60S ribosomal protein L18a × 1 60S ribosomal protein L21 × 1 （R4GIQ2） Large ribosomal subunit protein eL22 × 1 （Q98TF8） Large ribosomal subunit protein uL14 × 1 Ribosomal protein L24 × 1 （A0A8V0XRE7） Ribosomal protein uL23 × 1 Ribosomal protein L26 like 1 × 1 （F2Z4K6） Large ribosomal subunit protein eL27 × 1 （P61355） Ribosomal protein uL15 × 1 60S ribosomal protein L29 × 1 （A0A1L1RNZ2） Large ribosomal subunit protein eL30 × 1 （P67883） 60S ribosomal protein L31 × 1 （A0A1L1RT94） Ribosomal protein L32 × 1 （E1BVB1） 60S ribosomal protein L35a × 1 （A0A8V0YS49） 60S ribosomal protein L34 × 1 （A0A1L1S0X5） Large ribosomal subunit protein uL29 × 1 （Q98TF7） Large ribosomal subunit protein eL36 × 1 （Q98TF6） Ribosomal protein L37 × 1 （E1C810） 60S ribosomal protein L38 × 1 （E1BU66） Large ribosomal subunit protein eL39 × 1 （Q98TF5） Ubiquitin-60S ribosomal protein L40 × 1 （O42388） Ribosomal protein L36a like × 1 （A0A8V0YUB1） Large ribosomal subunit protein eL43 × 1 （P32046） 60S ribosomal protein L28 × 1 （Q5F346） 18S rRNA × 1 Small ribosomal subunit protein eS1 × 1 40S ribosomal protein S27 × 1 （A0A3Q2TV39） 40S ribosomal protein S28 × 1 （A0A3Q2U825） 40S ribosomal protein S2 × 1 （A0A8V0Z891） Small ribosomal subunit protein eS4 × 1 （P47836） Ribosomal protein eS30 × 1 40S ribosomal protein S26 × 1 （Q5ZM66） Small ribosomal subunit protein eS6 × 1 （P47838） 40S ribosomal protein S7 × 1 （F1NN16） 40S ribosomal protein S8 × 1 （F1NB02） 40S ribosomal protein S9 × 1 （B7NZS8） 40S ribosomal protein S11 × 1 （Q98TH5） Small ribosomal subunit protein uS15 × 1 （Q6ITC7） Ribosomal protein S14 × 1 （Q5ZHW8） 40S ribosomal protein S20 × 1 （F1NH93） Small ribosomal subunit protein eS21 × 1 40S ribosomal protein S15a × 1 （A0A3Q3A7P6） Small ribosomal subunit protein uS12 × 1 40S ribosomal protein S24 × 1 （F1NF89） Small ribosomal subunit protein uS2 × 1 （P50890） Ribosomal protein S16 × 1 （R4GGJ0） Ubiquitin × 1 （P79781） Ribosomal protein S5 × 1 （G1TFM5） Small ribosomal subunit protein RACK1 × 1 （P63247） 40S ribosomal protein S29 × 1 （A0A8V0Z8V3） Ribosomal protein S10 × 1 （E1C4N0） Small ribosomal subunit protein eS12 × 1 （P84175） Small ribosomal subunit protein uS19 × 1 （P62846） 40S ribosomal protein S18 × 1 （G1TPG3） 40S ribosomal protein S19 × 1 40S ribosomal protein S25 × 1 （A0A8V1A7V4） DNA-(apurinic or apyrimidinic site) lyase × 1 （F1NPA9） Phe tRNA × 1 MG MAGNESIUM ION × 494 ZN ZINC ION × 7 ELECTRON MICROSCOPY cryo-EM buffer：pH 7.5 cryo-EM vitrification conditions：Cryogen ETHANE Resolution 2.50 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

Other PDB Difference from Current Entry 8Q7Z Assembly / Oligomeric State Construct Mutations and Modifications Ligands, Ions and Non-polymers Method and Experimental Conditions Structure Quality
8Q87 Structure of the G. gallus 80S rotated ribosome in complex with eEF2 and SERBP1 Deposited 2023-08-18 Different oligomeric state Different ligand/ion Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 80 PDB declaration: 85-meric
Chain Aq 1–135（135 aa）
Not recorded MG MAGNESIUM ION × 492 ZN ZINC ION × 8 GDP GUANOSINE-5'-DIPHOSPHATE × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 2.40 Å

1 other PDB entries and 1 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name RS17_CHICK
Isoform —
PDB entities 80
Chains and sequence ranges Author chain Aq； PDBConstruct 1–135； UniProt 1–135

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

SAXS scattering curve SAXS Profile

SAXS profile for 8q7z

P(r) Distance Distribution P(r) Distribution

P(r) distribution for 8q7z
Download Download
▼

2. Structure Basics 2. Structure Basics

Entry ID entry_id8q7z
Deposition date deposition_date2023-08-17
Structure title titleStructure of the G. gallus 80S non-rotated ribosome
Keywords keywordstranslation, ribosome; RIBOSOME
Experimental Method methodELECTRON MICROSCOPY
▼

3. SAXS Parameters (CRYSOL theoretical calculation) 3. SAXS Parameters (CRYSOL)

Radius of gyration Rg (Guinier) rg_guinier93.31 Å
Radius of gyration Rg (electron density) rg_electron94.55 Å
Forward intensity I(0) i0278112000000.00
Molecular weight molecular_weight3120400.0 kDa
Excluded volume excluded_volume3334100 ų
Envelope volume envelope_volume5501500 ų
Hydration-shell volume shell_volume441080 ų
Envelope diameter envelope_diameter315.9 Å
Shell Rg shell_rg110.60 Å
Envelope Rg envelope_rg93.42 Å
Shape Rg shape_rg94.65 Å
Total Rg total_rg94.38 Å
Total atoms total_atoms211062
Residues n_residues16716
Spherical-harmonic order n_harmonics20
q range q_range— – 0.5000 Å−1
Data points n_points101
Shell type shell_typedirectional
Solvent electron density solvent_density0.3340 e/ų
Shell contrast contrast_shell0.0300 e/ų
CRYSOL version crysol_version4.1.3
▼

4. P(r) Distance Distribution (GNOM inversion) 4. P(r) Analysis (GNOM)

Maximum dimension Dmax dmax238.3 Å
Rg (real space) rg_real90.72 Å
Rg uncertainty (real space) rg_real_error0.36 Å
I(0) (real space) i0_real2.6610e+11
I(0) uncertainty (real space) i0_real_error4.8010e+09
Rg (reciprocal space) rg_reciprocal94.98 Å
I(0) (reciprocal space) i0_reciprocal279600000000.0000
Solution quality estimate total_estimate0.9104
Solution quality rating solution_quality EXCELLENT a EXCELLENT solution
P(r) peaks n_peaks1
Primary peak position r_peak_primary112.1 Å
Skewness Skewness skewness0.103
Kurtosis Kurtosis kurtosis-0.626
Angular range angular_range— – 0.0850 Å−1
Current regularization parameter α current_alpha0.9069
Highest regularization parameter α highest_alpha16710000000.0000
Real-space data points n_real_points18
GNOM version gnom_version4.1.3
Quality Criteria quality_criteria AN1: 0.000; Oscil: 0.999; Stabil: 0.957; Sysdev: 1.000; Positv: 1.000; Valcen: 0.971; Smooth: 0.000
▶

5. Crystallography and Experiment 5. Crystallography & Experiment

▶

6. Entities and Polymers Entities & Polymers (83)

▶

8. Citations (1)

▶

9. Files and Curves (10)