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8qny

OPR3 variant with redesigned loop 6 (8aa) in complex with NADPH4

Method: X-RAY DIFFRACTION
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1. Protein Identity and Related Structures Protein Identity & Related Structures

12-oxophytodienoate reductase 3

Solanum lycopersicum

UniProt Q9FEW9

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein monomer Monomer Protein 1 FLAVIN MONONUCLEOTIDE × 1 ;[[(2R,3S,4R,5R)-5-(5-aminocarbonyl-3,4-dihydro-2H-pyridin-1-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [(2R,3R,4R,5R)-5-(6-aminopurin-9-yl)-3-oxidanyl-4-phosphonooxy-oxolan-2-yl]methyl hydrogen phosphate ; × 1 water × 1 Consistent with protein count
2 Protein monomer Monomer Protein 1 FLAVIN MONONUCLEOTIDE × 1 ;[[(2R,3S,4R,5R)-5-(5-aminocarbonyl-3,4-dihydro-2H-pyridin-1-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [(2R,3R,4R,5R)-5-(6-aminopurin-9-yl)-3-oxidanyl-4-phosphonooxy-oxolan-2-yl]methyl hydrogen phosphate ; × 1 water × 1 Consistent with protein count

Other States of the Same Protein in the Database

Monomer
2hs6 2hs6 2hs8 2hs8 3hgo 3hgo 3hgs 3hgs 8aua 8aua 8aub 8aub

52 assemblies; showing the first 12

Homodimer
2hsa 8qn1 8qn1 8qnk 8s8y 9em0 9em2 9em4 9em6

9 assemblies

Homotetramer

None

Other homooligomers

None

Heteromeric or nucleic-acid complex
9fcn 9fcn 9fcp 9fcp

4 assemblies

View Construct and Data Evidence
UniProt name OPR3_SOLLC
Isoform —
PDB entities 1
Chains and sequence ranges Author chain A； PDBConstruct 10–396； UniProt 1–396 Author chain B； PDBConstruct 10–396； UniProt 1–396

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

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2. Structure Basics 2. Structure Basics

Entry ID entry_id8qny
Deposition date deposition_date2023-09-27
Structure title titleOPR3 variant with redesigned loop 6 (8aa) in complex with NADPH4
Keywords keywordsOld Yellow Enzyme, ene-reductase, flavoenzyme, NADPH, FLAVOPROTEIN; FLAVOPROTEIN
Experimental Method methodX-RAY DIFFRACTION
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3. Official assembly/model SAXS Official SAXS Profiles

This page reads only the latest assembly calculations. Every curve maps to an explicit PDB entry, official biological assembly and coordinate model.

8qny__assembly_1__model_1

Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

Download this curve (.dat)

8qny__assembly_1__model_1 | I(q)

10-2 10-1 105 106 107 q (1/Angstrom) I(q)
100 plotted points; both axes use logarithmic scales.

8qny__assembly_1__model_1 | P(r) · Pending

The new assembly/model P(r) has not been calculated yet This placeholder does not display legacy data r (Angstrom) P(r)
P(r) will be calculated and displayed separately for the same assembly/model.
Rg（Guinier）20.01 Å
Rg (electron density)18.90 Å
Total Rg19.85 Å
Atom count2838
Residues364
Excluded volume50264 ų
Maximum q0.500 Å⁻¹
Assembly Model Structure unit Oligomeric description Status CRYSOL Actions
1 1 8qny__assembly_1__model_1 monomeric （1） Success 4.1.3-1-20251215 (887e7ef) View Download
2 1 8qny__assembly_2__model_1 monomeric （1） Success 4.1.3-1-20251215 (887e7ef) View Download
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4. Crystallography and Experiment 4. Crystallography & Experiment

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5. Entities and Polymers Entities & Polymers (4)

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7. Citations (1)