8ro0

Structure of the C. elegans Intron Lariat Spliceosome primed for disassembly (ILS')

Method: ELECTRON MICROSCOPY
▼

1. Protein Identity and Related Structures Protein Identity & Related Structures

Pre-mRNA-splicing factor 8 homolog

OrganismNot specified

UniProt P34369

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Other combination Heteromer Protein 42 DNA 1 RNA 3 U2 snRNA × 1 U5 snRNA × 1 U6 snRNA × 1 U5 small nuclear ribonucleoprotein 200 kDa helicase × 1 (Q9U2G0) Tr-type G domain-containing protein × 1 (Q23463) Protein isy-1 × 1 (Q20716) WD_REPEATS_REGION domain-containing protein × 1 (Q19211) Pre-mRNA-splicing factor SYF1 × 1 (P91175) TPR_REGION domain-containing protein × 1 (O16376) Pre-mRNA-splicing factor SPF27 × 1 (Q22417) Cell division cycle 5-like protein × 1 (G5EFC4) Pre-mRNA-splicing factor syf-2 × 1 (Q09385) Protein BUD31 homolog × 1 (P34313) Pre-mRNA-splicing factor RBM22 × 1 (Q22412) Spliceosome-associated protein CWC15 homolog × 1 (O45766) GCF C-terminal domain-containing protein × 1 (G5ECH1) Intron-binding protein aquarius × 1 (Q9U1Q7) Uncharacterized protein T27F2.1 × 1 (Q22836) Peptidyl-prolyl cis-trans isomerase × 1 (Q18445) WD_REPEATS_REGION domain-containing protein × 1 (G5EEL2) Septin and tuftelin-interacting protein 1 homolog × 1 (Q17784) WD_REPEATS_REGION domain-containing protein × 1 (O44729) Coiled-coil domain-containing protein 12 × 1 (Q95XJ1) Small nuclear ribonucleoprotein Sm D3 × 2 (Q17348) Probable small nuclear ribonucleoprotein-associated protein B × 2 (P91918) Small nuclear ribonucleoprotein Sm D1 × 2 (E3LR34) Probable small nuclear ribonucleoprotein Sm D2 × 2 (Q18786) Probable small nuclear ribonucleoprotein E × 2 (Q9XTU6) Probable small nuclear ribonucleoprotein F × 2 (P34659) Probable small nuclear ribonucleoprotein G × 2 (Q9N4G9) ;Probable U2 small nuclear ribonucleoprotein A' ; × 1 (Q9BLB6) RRM domain-containing protein × 1 (Q21323) Pre-mRNA-processing factor 19 × 4 (Q10051) Peptidyl-prolyl cis-trans isomerase E × 1 (Q9U2S6) Intron lariat RNA × 1 MAGNESIUM ION × 7 INOSITOL HEXAKISPHOSPHATE × 2 GUANOSINE-5'-TRIPHOSPHATE × 1 ZINC ION × 6 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name PRP8_CAEEL
Isoform —
PDB entities 4
Chains and sequence ranges Author chain A; PDBConstruct 1–2329; UniProt 1–2329

U5 small nuclear ribonucleoprotein 200 kDa helicase

OrganismNot specified

UniProt Q9U2G0

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Other combination Heteromer Protein 42 DNA 1 RNA 3 U2 snRNA × 1 U5 snRNA × 1 U6 snRNA × 1 Pre-mRNA-splicing factor 8 homolog × 1 (P34369) Tr-type G domain-containing protein × 1 (Q23463) Protein isy-1 × 1 (Q20716) WD_REPEATS_REGION domain-containing protein × 1 (Q19211) Pre-mRNA-splicing factor SYF1 × 1 (P91175) TPR_REGION domain-containing protein × 1 (O16376) Pre-mRNA-splicing factor SPF27 × 1 (Q22417) Cell division cycle 5-like protein × 1 (G5EFC4) Pre-mRNA-splicing factor syf-2 × 1 (Q09385) Protein BUD31 homolog × 1 (P34313) Pre-mRNA-splicing factor RBM22 × 1 (Q22412) Spliceosome-associated protein CWC15 homolog × 1 (O45766) GCF C-terminal domain-containing protein × 1 (G5ECH1) Intron-binding protein aquarius × 1 (Q9U1Q7) Uncharacterized protein T27F2.1 × 1 (Q22836) Peptidyl-prolyl cis-trans isomerase × 1 (Q18445) WD_REPEATS_REGION domain-containing protein × 1 (G5EEL2) Septin and tuftelin-interacting protein 1 homolog × 1 (Q17784) WD_REPEATS_REGION domain-containing protein × 1 (O44729) Coiled-coil domain-containing protein 12 × 1 (Q95XJ1) Small nuclear ribonucleoprotein Sm D3 × 2 (Q17348) Probable small nuclear ribonucleoprotein-associated protein B × 2 (P91918) Small nuclear ribonucleoprotein Sm D1 × 2 (E3LR34) Probable small nuclear ribonucleoprotein Sm D2 × 2 (Q18786) Probable small nuclear ribonucleoprotein E × 2 (Q9XTU6) Probable small nuclear ribonucleoprotein F × 2 (P34659) Probable small nuclear ribonucleoprotein G × 2 (Q9N4G9) ;Probable U2 small nuclear ribonucleoprotein A' ; × 1 (Q9BLB6) RRM domain-containing protein × 1 (Q21323) Pre-mRNA-processing factor 19 × 4 (Q10051) Peptidyl-prolyl cis-trans isomerase E × 1 (Q9U2S6) Intron lariat RNA × 1 MAGNESIUM ION × 7 INOSITOL HEXAKISPHOSPHATE × 2 GUANOSINE-5'-TRIPHOSPHATE × 1 ZINC ION × 6 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name U520_CAEEL
Isoform —
PDB entities 5
Chains and sequence ranges Author chain B; PDBConstruct 1–2145; UniProt 1–2145

Tr-type G domain-containing protein

OrganismNot specified

UniProt Q23463

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Other combination Heteromer Protein 42 DNA 1 RNA 3 U2 snRNA × 1 U5 snRNA × 1 U6 snRNA × 1 Pre-mRNA-splicing factor 8 homolog × 1 (P34369) U5 small nuclear ribonucleoprotein 200 kDa helicase × 1 (Q9U2G0) Protein isy-1 × 1 (Q20716) WD_REPEATS_REGION domain-containing protein × 1 (Q19211) Pre-mRNA-splicing factor SYF1 × 1 (P91175) TPR_REGION domain-containing protein × 1 (O16376) Pre-mRNA-splicing factor SPF27 × 1 (Q22417) Cell division cycle 5-like protein × 1 (G5EFC4) Pre-mRNA-splicing factor syf-2 × 1 (Q09385) Protein BUD31 homolog × 1 (P34313) Pre-mRNA-splicing factor RBM22 × 1 (Q22412) Spliceosome-associated protein CWC15 homolog × 1 (O45766) GCF C-terminal domain-containing protein × 1 (G5ECH1) Intron-binding protein aquarius × 1 (Q9U1Q7) Uncharacterized protein T27F2.1 × 1 (Q22836) Peptidyl-prolyl cis-trans isomerase × 1 (Q18445) WD_REPEATS_REGION domain-containing protein × 1 (G5EEL2) Septin and tuftelin-interacting protein 1 homolog × 1 (Q17784) WD_REPEATS_REGION domain-containing protein × 1 (O44729) Coiled-coil domain-containing protein 12 × 1 (Q95XJ1) Small nuclear ribonucleoprotein Sm D3 × 2 (Q17348) Probable small nuclear ribonucleoprotein-associated protein B × 2 (P91918) Small nuclear ribonucleoprotein Sm D1 × 2 (E3LR34) Probable small nuclear ribonucleoprotein Sm D2 × 2 (Q18786) Probable small nuclear ribonucleoprotein E × 2 (Q9XTU6) Probable small nuclear ribonucleoprotein F × 2 (P34659) Probable small nuclear ribonucleoprotein G × 2 (Q9N4G9) ;Probable U2 small nuclear ribonucleoprotein A' ; × 1 (Q9BLB6) RRM domain-containing protein × 1 (Q21323) Pre-mRNA-processing factor 19 × 4 (Q10051) Peptidyl-prolyl cis-trans isomerase E × 1 (Q9U2S6) Intron lariat RNA × 1 MAGNESIUM ION × 7 INOSITOL HEXAKISPHOSPHATE × 2 GUANOSINE-5'-TRIPHOSPHATE × 1 ZINC ION × 6 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name Q23463_CAEEL
Isoform —
PDB entities 6
Chains and sequence ranges Author chain C; PDBConstruct 1–974; UniProt 1–974

Protein isy-1

OrganismNot specified

UniProt Q20716

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Other combination Heteromer Protein 42 DNA 1 RNA 3 U2 snRNA × 1 U5 snRNA × 1 U6 snRNA × 1 Pre-mRNA-splicing factor 8 homolog × 1 (P34369) U5 small nuclear ribonucleoprotein 200 kDa helicase × 1 (Q9U2G0) Tr-type G domain-containing protein × 1 (Q23463) WD_REPEATS_REGION domain-containing protein × 1 (Q19211) Pre-mRNA-splicing factor SYF1 × 1 (P91175) TPR_REGION domain-containing protein × 1 (O16376) Pre-mRNA-splicing factor SPF27 × 1 (Q22417) Cell division cycle 5-like protein × 1 (G5EFC4) Pre-mRNA-splicing factor syf-2 × 1 (Q09385) Protein BUD31 homolog × 1 (P34313) Pre-mRNA-splicing factor RBM22 × 1 (Q22412) Spliceosome-associated protein CWC15 homolog × 1 (O45766) GCF C-terminal domain-containing protein × 1 (G5ECH1) Intron-binding protein aquarius × 1 (Q9U1Q7) Uncharacterized protein T27F2.1 × 1 (Q22836) Peptidyl-prolyl cis-trans isomerase × 1 (Q18445) WD_REPEATS_REGION domain-containing protein × 1 (G5EEL2) Septin and tuftelin-interacting protein 1 homolog × 1 (Q17784) WD_REPEATS_REGION domain-containing protein × 1 (O44729) Coiled-coil domain-containing protein 12 × 1 (Q95XJ1) Small nuclear ribonucleoprotein Sm D3 × 2 (Q17348) Probable small nuclear ribonucleoprotein-associated protein B × 2 (P91918) Small nuclear ribonucleoprotein Sm D1 × 2 (E3LR34) Probable small nuclear ribonucleoprotein Sm D2 × 2 (Q18786) Probable small nuclear ribonucleoprotein E × 2 (Q9XTU6) Probable small nuclear ribonucleoprotein F × 2 (P34659) Probable small nuclear ribonucleoprotein G × 2 (Q9N4G9) ;Probable U2 small nuclear ribonucleoprotein A' ; × 1 (Q9BLB6) RRM domain-containing protein × 1 (Q21323) Pre-mRNA-processing factor 19 × 4 (Q10051) Peptidyl-prolyl cis-trans isomerase E × 1 (Q9U2S6) Intron lariat RNA × 1 MAGNESIUM ION × 7 INOSITOL HEXAKISPHOSPHATE × 2 GUANOSINE-5'-TRIPHOSPHATE × 1 ZINC ION × 6 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name ISY1_CAEEL
Isoform —
PDB entities 7
Chains and sequence ranges Author chain D; PDBConstruct 1–267; UniProt 1–267

WD_REPEATS_REGION domain-containing protein

OrganismNot specified

UniProt Q19211

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Other combination Heteromer Protein 42 DNA 1 RNA 3 U2 snRNA × 1 U5 snRNA × 1 U6 snRNA × 1 Pre-mRNA-splicing factor 8 homolog × 1 (P34369) U5 small nuclear ribonucleoprotein 200 kDa helicase × 1 (Q9U2G0) Tr-type G domain-containing protein × 1 (Q23463) Protein isy-1 × 1 (Q20716) Pre-mRNA-splicing factor SYF1 × 1 (P91175) TPR_REGION domain-containing protein × 1 (O16376) Pre-mRNA-splicing factor SPF27 × 1 (Q22417) Cell division cycle 5-like protein × 1 (G5EFC4) Pre-mRNA-splicing factor syf-2 × 1 (Q09385) Protein BUD31 homolog × 1 (P34313) Pre-mRNA-splicing factor RBM22 × 1 (Q22412) Spliceosome-associated protein CWC15 homolog × 1 (O45766) GCF C-terminal domain-containing protein × 1 (G5ECH1) Intron-binding protein aquarius × 1 (Q9U1Q7) Uncharacterized protein T27F2.1 × 1 (Q22836) Peptidyl-prolyl cis-trans isomerase × 1 (Q18445) WD_REPEATS_REGION domain-containing protein × 1 (G5EEL2) Septin and tuftelin-interacting protein 1 homolog × 1 (Q17784) WD_REPEATS_REGION domain-containing protein × 1 (O44729) Coiled-coil domain-containing protein 12 × 1 (Q95XJ1) Small nuclear ribonucleoprotein Sm D3 × 2 (Q17348) Probable small nuclear ribonucleoprotein-associated protein B × 2 (P91918) Small nuclear ribonucleoprotein Sm D1 × 2 (E3LR34) Probable small nuclear ribonucleoprotein Sm D2 × 2 (Q18786) Probable small nuclear ribonucleoprotein E × 2 (Q9XTU6) Probable small nuclear ribonucleoprotein F × 2 (P34659) Probable small nuclear ribonucleoprotein G × 2 (Q9N4G9) ;Probable U2 small nuclear ribonucleoprotein A' ; × 1 (Q9BLB6) RRM domain-containing protein × 1 (Q21323) Pre-mRNA-processing factor 19 × 4 (Q10051) Peptidyl-prolyl cis-trans isomerase E × 1 (Q9U2S6) Intron lariat RNA × 1 MAGNESIUM ION × 7 INOSITOL HEXAKISPHOSPHATE × 2 GUANOSINE-5'-TRIPHOSPHATE × 1 ZINC ION × 6 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name Q19211_CAEEL
Isoform —
PDB entities 8
Chains and sequence ranges Author chain E; PDBConstruct 1–331; UniProt 1–331

Pre-mRNA-splicing factor SYF1

OrganismNot specified

UniProt P91175

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Other combination Heteromer Protein 42 DNA 1 RNA 3 U2 snRNA × 1 U5 snRNA × 1 U6 snRNA × 1 Pre-mRNA-splicing factor 8 homolog × 1 (P34369) U5 small nuclear ribonucleoprotein 200 kDa helicase × 1 (Q9U2G0) Tr-type G domain-containing protein × 1 (Q23463) Protein isy-1 × 1 (Q20716) WD_REPEATS_REGION domain-containing protein × 1 (Q19211) TPR_REGION domain-containing protein × 1 (O16376) Pre-mRNA-splicing factor SPF27 × 1 (Q22417) Cell division cycle 5-like protein × 1 (G5EFC4) Pre-mRNA-splicing factor syf-2 × 1 (Q09385) Protein BUD31 homolog × 1 (P34313) Pre-mRNA-splicing factor RBM22 × 1 (Q22412) Spliceosome-associated protein CWC15 homolog × 1 (O45766) GCF C-terminal domain-containing protein × 1 (G5ECH1) Intron-binding protein aquarius × 1 (Q9U1Q7) Uncharacterized protein T27F2.1 × 1 (Q22836) Peptidyl-prolyl cis-trans isomerase × 1 (Q18445) WD_REPEATS_REGION domain-containing protein × 1 (G5EEL2) Septin and tuftelin-interacting protein 1 homolog × 1 (Q17784) WD_REPEATS_REGION domain-containing protein × 1 (O44729) Coiled-coil domain-containing protein 12 × 1 (Q95XJ1) Small nuclear ribonucleoprotein Sm D3 × 2 (Q17348) Probable small nuclear ribonucleoprotein-associated protein B × 2 (P91918) Small nuclear ribonucleoprotein Sm D1 × 2 (E3LR34) Probable small nuclear ribonucleoprotein Sm D2 × 2 (Q18786) Probable small nuclear ribonucleoprotein E × 2 (Q9XTU6) Probable small nuclear ribonucleoprotein F × 2 (P34659) Probable small nuclear ribonucleoprotein G × 2 (Q9N4G9) ;Probable U2 small nuclear ribonucleoprotein A' ; × 1 (Q9BLB6) RRM domain-containing protein × 1 (Q21323) Pre-mRNA-processing factor 19 × 4 (Q10051) Peptidyl-prolyl cis-trans isomerase E × 1 (Q9U2S6) Intron lariat RNA × 1 MAGNESIUM ION × 7 INOSITOL HEXAKISPHOSPHATE × 2 GUANOSINE-5'-TRIPHOSPHATE × 1 ZINC ION × 6 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name P91175_CAEEL
Isoform —
PDB entities 9
Chains and sequence ranges Author chain I; PDBConstruct 1–855; UniProt 1–855

TPR_REGION domain-containing protein

OrganismNot specified

UniProt O16376

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Other combination Heteromer Protein 42 DNA 1 RNA 3 U2 snRNA × 1 U5 snRNA × 1 U6 snRNA × 1 Pre-mRNA-splicing factor 8 homolog × 1 (P34369) U5 small nuclear ribonucleoprotein 200 kDa helicase × 1 (Q9U2G0) Tr-type G domain-containing protein × 1 (Q23463) Protein isy-1 × 1 (Q20716) WD_REPEATS_REGION domain-containing protein × 1 (Q19211) Pre-mRNA-splicing factor SYF1 × 1 (P91175) Pre-mRNA-splicing factor SPF27 × 1 (Q22417) Cell division cycle 5-like protein × 1 (G5EFC4) Pre-mRNA-splicing factor syf-2 × 1 (Q09385) Protein BUD31 homolog × 1 (P34313) Pre-mRNA-splicing factor RBM22 × 1 (Q22412) Spliceosome-associated protein CWC15 homolog × 1 (O45766) GCF C-terminal domain-containing protein × 1 (G5ECH1) Intron-binding protein aquarius × 1 (Q9U1Q7) Uncharacterized protein T27F2.1 × 1 (Q22836) Peptidyl-prolyl cis-trans isomerase × 1 (Q18445) WD_REPEATS_REGION domain-containing protein × 1 (G5EEL2) Septin and tuftelin-interacting protein 1 homolog × 1 (Q17784) WD_REPEATS_REGION domain-containing protein × 1 (O44729) Coiled-coil domain-containing protein 12 × 1 (Q95XJ1) Small nuclear ribonucleoprotein Sm D3 × 2 (Q17348) Probable small nuclear ribonucleoprotein-associated protein B × 2 (P91918) Small nuclear ribonucleoprotein Sm D1 × 2 (E3LR34) Probable small nuclear ribonucleoprotein Sm D2 × 2 (Q18786) Probable small nuclear ribonucleoprotein E × 2 (Q9XTU6) Probable small nuclear ribonucleoprotein F × 2 (P34659) Probable small nuclear ribonucleoprotein G × 2 (Q9N4G9) ;Probable U2 small nuclear ribonucleoprotein A' ; × 1 (Q9BLB6) RRM domain-containing protein × 1 (Q21323) Pre-mRNA-processing factor 19 × 4 (Q10051) Peptidyl-prolyl cis-trans isomerase E × 1 (Q9U2S6) Intron lariat RNA × 1 MAGNESIUM ION × 7 INOSITOL HEXAKISPHOSPHATE × 2 GUANOSINE-5'-TRIPHOSPHATE × 1 ZINC ION × 6 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name O16376_CAEEL
Isoform —
PDB entities 10
Chains and sequence ranges Author chain J; PDBConstruct 1–744; UniProt 1–744

Pre-mRNA-splicing factor SPF27

OrganismNot specified

UniProt Q22417

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Other combination Heteromer Protein 42 DNA 1 RNA 3 U2 snRNA × 1 U5 snRNA × 1 U6 snRNA × 1 Pre-mRNA-splicing factor 8 homolog × 1 (P34369) U5 small nuclear ribonucleoprotein 200 kDa helicase × 1 (Q9U2G0) Tr-type G domain-containing protein × 1 (Q23463) Protein isy-1 × 1 (Q20716) WD_REPEATS_REGION domain-containing protein × 1 (Q19211) Pre-mRNA-splicing factor SYF1 × 1 (P91175) TPR_REGION domain-containing protein × 1 (O16376) Cell division cycle 5-like protein × 1 (G5EFC4) Pre-mRNA-splicing factor syf-2 × 1 (Q09385) Protein BUD31 homolog × 1 (P34313) Pre-mRNA-splicing factor RBM22 × 1 (Q22412) Spliceosome-associated protein CWC15 homolog × 1 (O45766) GCF C-terminal domain-containing protein × 1 (G5ECH1) Intron-binding protein aquarius × 1 (Q9U1Q7) Uncharacterized protein T27F2.1 × 1 (Q22836) Peptidyl-prolyl cis-trans isomerase × 1 (Q18445) WD_REPEATS_REGION domain-containing protein × 1 (G5EEL2) Septin and tuftelin-interacting protein 1 homolog × 1 (Q17784) WD_REPEATS_REGION domain-containing protein × 1 (O44729) Coiled-coil domain-containing protein 12 × 1 (Q95XJ1) Small nuclear ribonucleoprotein Sm D3 × 2 (Q17348) Probable small nuclear ribonucleoprotein-associated protein B × 2 (P91918) Small nuclear ribonucleoprotein Sm D1 × 2 (E3LR34) Probable small nuclear ribonucleoprotein Sm D2 × 2 (Q18786) Probable small nuclear ribonucleoprotein E × 2 (Q9XTU6) Probable small nuclear ribonucleoprotein F × 2 (P34659) Probable small nuclear ribonucleoprotein G × 2 (Q9N4G9) ;Probable U2 small nuclear ribonucleoprotein A' ; × 1 (Q9BLB6) RRM domain-containing protein × 1 (Q21323) Pre-mRNA-processing factor 19 × 4 (Q10051) Peptidyl-prolyl cis-trans isomerase E × 1 (Q9U2S6) Intron lariat RNA × 1 MAGNESIUM ION × 7 INOSITOL HEXAKISPHOSPHATE × 2 GUANOSINE-5'-TRIPHOSPHATE × 1 ZINC ION × 6 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name Q22417_CAEEL
Isoform —
PDB entities 11
Chains and sequence ranges Author chain K; PDBConstruct 1–238; UniProt 1–238

Cell division cycle 5-like protein

OrganismNot specified

UniProt G5EFC4

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Other combination Heteromer Protein 42 DNA 1 RNA 3 U2 snRNA × 1 U5 snRNA × 1 U6 snRNA × 1 Pre-mRNA-splicing factor 8 homolog × 1 (P34369) U5 small nuclear ribonucleoprotein 200 kDa helicase × 1 (Q9U2G0) Tr-type G domain-containing protein × 1 (Q23463) Protein isy-1 × 1 (Q20716) WD_REPEATS_REGION domain-containing protein × 1 (Q19211) Pre-mRNA-splicing factor SYF1 × 1 (P91175) TPR_REGION domain-containing protein × 1 (O16376) Pre-mRNA-splicing factor SPF27 × 1 (Q22417) Pre-mRNA-splicing factor syf-2 × 1 (Q09385) Protein BUD31 homolog × 1 (P34313) Pre-mRNA-splicing factor RBM22 × 1 (Q22412) Spliceosome-associated protein CWC15 homolog × 1 (O45766) GCF C-terminal domain-containing protein × 1 (G5ECH1) Intron-binding protein aquarius × 1 (Q9U1Q7) Uncharacterized protein T27F2.1 × 1 (Q22836) Peptidyl-prolyl cis-trans isomerase × 1 (Q18445) WD_REPEATS_REGION domain-containing protein × 1 (G5EEL2) Septin and tuftelin-interacting protein 1 homolog × 1 (Q17784) WD_REPEATS_REGION domain-containing protein × 1 (O44729) Coiled-coil domain-containing protein 12 × 1 (Q95XJ1) Small nuclear ribonucleoprotein Sm D3 × 2 (Q17348) Probable small nuclear ribonucleoprotein-associated protein B × 2 (P91918) Small nuclear ribonucleoprotein Sm D1 × 2 (E3LR34) Probable small nuclear ribonucleoprotein Sm D2 × 2 (Q18786) Probable small nuclear ribonucleoprotein E × 2 (Q9XTU6) Probable small nuclear ribonucleoprotein F × 2 (P34659) Probable small nuclear ribonucleoprotein G × 2 (Q9N4G9) ;Probable U2 small nuclear ribonucleoprotein A' ; × 1 (Q9BLB6) RRM domain-containing protein × 1 (Q21323) Pre-mRNA-processing factor 19 × 4 (Q10051) Peptidyl-prolyl cis-trans isomerase E × 1 (Q9U2S6) Intron lariat RNA × 1 MAGNESIUM ION × 7 INOSITOL HEXAKISPHOSPHATE × 2 GUANOSINE-5'-TRIPHOSPHATE × 1 ZINC ION × 6 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name G5EFC4_CAEEL
Isoform —
PDB entities 12
Chains and sequence ranges Author chain L; PDBConstruct 1–755; UniProt 1–755

Pre-mRNA-splicing factor syf-2

OrganismNot specified

UniProt Q09385

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Other combination Heteromer Protein 42 DNA 1 RNA 3 U2 snRNA × 1 U5 snRNA × 1 U6 snRNA × 1 Pre-mRNA-splicing factor 8 homolog × 1 (P34369) U5 small nuclear ribonucleoprotein 200 kDa helicase × 1 (Q9U2G0) Tr-type G domain-containing protein × 1 (Q23463) Protein isy-1 × 1 (Q20716) WD_REPEATS_REGION domain-containing protein × 1 (Q19211) Pre-mRNA-splicing factor SYF1 × 1 (P91175) TPR_REGION domain-containing protein × 1 (O16376) Pre-mRNA-splicing factor SPF27 × 1 (Q22417) Cell division cycle 5-like protein × 1 (G5EFC4) Protein BUD31 homolog × 1 (P34313) Pre-mRNA-splicing factor RBM22 × 1 (Q22412) Spliceosome-associated protein CWC15 homolog × 1 (O45766) GCF C-terminal domain-containing protein × 1 (G5ECH1) Intron-binding protein aquarius × 1 (Q9U1Q7) Uncharacterized protein T27F2.1 × 1 (Q22836) Peptidyl-prolyl cis-trans isomerase × 1 (Q18445) WD_REPEATS_REGION domain-containing protein × 1 (G5EEL2) Septin and tuftelin-interacting protein 1 homolog × 1 (Q17784) WD_REPEATS_REGION domain-containing protein × 1 (O44729) Coiled-coil domain-containing protein 12 × 1 (Q95XJ1) Small nuclear ribonucleoprotein Sm D3 × 2 (Q17348) Probable small nuclear ribonucleoprotein-associated protein B × 2 (P91918) Small nuclear ribonucleoprotein Sm D1 × 2 (E3LR34) Probable small nuclear ribonucleoprotein Sm D2 × 2 (Q18786) Probable small nuclear ribonucleoprotein E × 2 (Q9XTU6) Probable small nuclear ribonucleoprotein F × 2 (P34659) Probable small nuclear ribonucleoprotein G × 2 (Q9N4G9) ;Probable U2 small nuclear ribonucleoprotein A' ; × 1 (Q9BLB6) RRM domain-containing protein × 1 (Q21323) Pre-mRNA-processing factor 19 × 4 (Q10051) Peptidyl-prolyl cis-trans isomerase E × 1 (Q9U2S6) Intron lariat RNA × 1 MAGNESIUM ION × 7 INOSITOL HEXAKISPHOSPHATE × 2 GUANOSINE-5'-TRIPHOSPHATE × 1 ZINC ION × 6 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name SYF2_CAEEL
Isoform —
PDB entities 13
Chains and sequence ranges Author chain M; PDBConstruct 1–234; UniProt 1–234

Protein BUD31 homolog

OrganismNot specified

UniProt P34313

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Other combination Heteromer Protein 42 DNA 1 RNA 3 U2 snRNA × 1 U5 snRNA × 1 U6 snRNA × 1 Pre-mRNA-splicing factor 8 homolog × 1 (P34369) U5 small nuclear ribonucleoprotein 200 kDa helicase × 1 (Q9U2G0) Tr-type G domain-containing protein × 1 (Q23463) Protein isy-1 × 1 (Q20716) WD_REPEATS_REGION domain-containing protein × 1 (Q19211) Pre-mRNA-splicing factor SYF1 × 1 (P91175) TPR_REGION domain-containing protein × 1 (O16376) Pre-mRNA-splicing factor SPF27 × 1 (Q22417) Cell division cycle 5-like protein × 1 (G5EFC4) Pre-mRNA-splicing factor syf-2 × 1 (Q09385) Pre-mRNA-splicing factor RBM22 × 1 (Q22412) Spliceosome-associated protein CWC15 homolog × 1 (O45766) GCF C-terminal domain-containing protein × 1 (G5ECH1) Intron-binding protein aquarius × 1 (Q9U1Q7) Uncharacterized protein T27F2.1 × 1 (Q22836) Peptidyl-prolyl cis-trans isomerase × 1 (Q18445) WD_REPEATS_REGION domain-containing protein × 1 (G5EEL2) Septin and tuftelin-interacting protein 1 homolog × 1 (Q17784) WD_REPEATS_REGION domain-containing protein × 1 (O44729) Coiled-coil domain-containing protein 12 × 1 (Q95XJ1) Small nuclear ribonucleoprotein Sm D3 × 2 (Q17348) Probable small nuclear ribonucleoprotein-associated protein B × 2 (P91918) Small nuclear ribonucleoprotein Sm D1 × 2 (E3LR34) Probable small nuclear ribonucleoprotein Sm D2 × 2 (Q18786) Probable small nuclear ribonucleoprotein E × 2 (Q9XTU6) Probable small nuclear ribonucleoprotein F × 2 (P34659) Probable small nuclear ribonucleoprotein G × 2 (Q9N4G9) ;Probable U2 small nuclear ribonucleoprotein A' ; × 1 (Q9BLB6) RRM domain-containing protein × 1 (Q21323) Pre-mRNA-processing factor 19 × 4 (Q10051) Peptidyl-prolyl cis-trans isomerase E × 1 (Q9U2S6) Intron lariat RNA × 1 MAGNESIUM ION × 7 INOSITOL HEXAKISPHOSPHATE × 2 GUANOSINE-5'-TRIPHOSPHATE × 1 ZINC ION × 6 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name BUD31_CAEEL
Isoform —
PDB entities 14
Chains and sequence ranges Author chain N; PDBConstruct 1–147; UniProt 1–147

Pre-mRNA-splicing factor RBM22

OrganismNot specified

UniProt Q22412

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Other combination Heteromer Protein 42 DNA 1 RNA 3 U2 snRNA × 1 U5 snRNA × 1 U6 snRNA × 1 Pre-mRNA-splicing factor 8 homolog × 1 (P34369) U5 small nuclear ribonucleoprotein 200 kDa helicase × 1 (Q9U2G0) Tr-type G domain-containing protein × 1 (Q23463) Protein isy-1 × 1 (Q20716) WD_REPEATS_REGION domain-containing protein × 1 (Q19211) Pre-mRNA-splicing factor SYF1 × 1 (P91175) TPR_REGION domain-containing protein × 1 (O16376) Pre-mRNA-splicing factor SPF27 × 1 (Q22417) Cell division cycle 5-like protein × 1 (G5EFC4) Pre-mRNA-splicing factor syf-2 × 1 (Q09385) Protein BUD31 homolog × 1 (P34313) Spliceosome-associated protein CWC15 homolog × 1 (O45766) GCF C-terminal domain-containing protein × 1 (G5ECH1) Intron-binding protein aquarius × 1 (Q9U1Q7) Uncharacterized protein T27F2.1 × 1 (Q22836) Peptidyl-prolyl cis-trans isomerase × 1 (Q18445) WD_REPEATS_REGION domain-containing protein × 1 (G5EEL2) Septin and tuftelin-interacting protein 1 homolog × 1 (Q17784) WD_REPEATS_REGION domain-containing protein × 1 (O44729) Coiled-coil domain-containing protein 12 × 1 (Q95XJ1) Small nuclear ribonucleoprotein Sm D3 × 2 (Q17348) Probable small nuclear ribonucleoprotein-associated protein B × 2 (P91918) Small nuclear ribonucleoprotein Sm D1 × 2 (E3LR34) Probable small nuclear ribonucleoprotein Sm D2 × 2 (Q18786) Probable small nuclear ribonucleoprotein E × 2 (Q9XTU6) Probable small nuclear ribonucleoprotein F × 2 (P34659) Probable small nuclear ribonucleoprotein G × 2 (Q9N4G9) ;Probable U2 small nuclear ribonucleoprotein A' ; × 1 (Q9BLB6) RRM domain-containing protein × 1 (Q21323) Pre-mRNA-processing factor 19 × 4 (Q10051) Peptidyl-prolyl cis-trans isomerase E × 1 (Q9U2S6) Intron lariat RNA × 1 MAGNESIUM ION × 7 INOSITOL HEXAKISPHOSPHATE × 2 GUANOSINE-5'-TRIPHOSPHATE × 1 ZINC ION × 6 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name Q22412_CAEEL
Isoform —
PDB entities 15
Chains and sequence ranges Author chain O; PDBConstruct 1–408; UniProt 1–408

Spliceosome-associated protein CWC15 homolog

OrganismNot specified

UniProt O45766

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Other combination Heteromer Protein 42 DNA 1 RNA 3 U2 snRNA × 1 U5 snRNA × 1 U6 snRNA × 1 Pre-mRNA-splicing factor 8 homolog × 1 (P34369) U5 small nuclear ribonucleoprotein 200 kDa helicase × 1 (Q9U2G0) Tr-type G domain-containing protein × 1 (Q23463) Protein isy-1 × 1 (Q20716) WD_REPEATS_REGION domain-containing protein × 1 (Q19211) Pre-mRNA-splicing factor SYF1 × 1 (P91175) TPR_REGION domain-containing protein × 1 (O16376) Pre-mRNA-splicing factor SPF27 × 1 (Q22417) Cell division cycle 5-like protein × 1 (G5EFC4) Pre-mRNA-splicing factor syf-2 × 1 (Q09385) Protein BUD31 homolog × 1 (P34313) Pre-mRNA-splicing factor RBM22 × 1 (Q22412) GCF C-terminal domain-containing protein × 1 (G5ECH1) Intron-binding protein aquarius × 1 (Q9U1Q7) Uncharacterized protein T27F2.1 × 1 (Q22836) Peptidyl-prolyl cis-trans isomerase × 1 (Q18445) WD_REPEATS_REGION domain-containing protein × 1 (G5EEL2) Septin and tuftelin-interacting protein 1 homolog × 1 (Q17784) WD_REPEATS_REGION domain-containing protein × 1 (O44729) Coiled-coil domain-containing protein 12 × 1 (Q95XJ1) Small nuclear ribonucleoprotein Sm D3 × 2 (Q17348) Probable small nuclear ribonucleoprotein-associated protein B × 2 (P91918) Small nuclear ribonucleoprotein Sm D1 × 2 (E3LR34) Probable small nuclear ribonucleoprotein Sm D2 × 2 (Q18786) Probable small nuclear ribonucleoprotein E × 2 (Q9XTU6) Probable small nuclear ribonucleoprotein F × 2 (P34659) Probable small nuclear ribonucleoprotein G × 2 (Q9N4G9) ;Probable U2 small nuclear ribonucleoprotein A' ; × 1 (Q9BLB6) RRM domain-containing protein × 1 (Q21323) Pre-mRNA-processing factor 19 × 4 (Q10051) Peptidyl-prolyl cis-trans isomerase E × 1 (Q9U2S6) Intron lariat RNA × 1 MAGNESIUM ION × 7 INOSITOL HEXAKISPHOSPHATE × 2 GUANOSINE-5'-TRIPHOSPHATE × 1 ZINC ION × 6 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name CWC15_CAEEL
Isoform —
PDB entities 16
Chains and sequence ranges Author chain P; PDBConstruct 1–230; UniProt 1–230

GCF C-terminal domain-containing protein

OrganismNot specified

UniProt G5ECH1

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Other combination Heteromer Protein 42 DNA 1 RNA 3 U2 snRNA × 1 U5 snRNA × 1 U6 snRNA × 1 Pre-mRNA-splicing factor 8 homolog × 1 (P34369) U5 small nuclear ribonucleoprotein 200 kDa helicase × 1 (Q9U2G0) Tr-type G domain-containing protein × 1 (Q23463) Protein isy-1 × 1 (Q20716) WD_REPEATS_REGION domain-containing protein × 1 (Q19211) Pre-mRNA-splicing factor SYF1 × 1 (P91175) TPR_REGION domain-containing protein × 1 (O16376) Pre-mRNA-splicing factor SPF27 × 1 (Q22417) Cell division cycle 5-like protein × 1 (G5EFC4) Pre-mRNA-splicing factor syf-2 × 1 (Q09385) Protein BUD31 homolog × 1 (P34313) Pre-mRNA-splicing factor RBM22 × 1 (Q22412) Spliceosome-associated protein CWC15 homolog × 1 (O45766) Intron-binding protein aquarius × 1 (Q9U1Q7) Uncharacterized protein T27F2.1 × 1 (Q22836) Peptidyl-prolyl cis-trans isomerase × 1 (Q18445) WD_REPEATS_REGION domain-containing protein × 1 (G5EEL2) Septin and tuftelin-interacting protein 1 homolog × 1 (Q17784) WD_REPEATS_REGION domain-containing protein × 1 (O44729) Coiled-coil domain-containing protein 12 × 1 (Q95XJ1) Small nuclear ribonucleoprotein Sm D3 × 2 (Q17348) Probable small nuclear ribonucleoprotein-associated protein B × 2 (P91918) Small nuclear ribonucleoprotein Sm D1 × 2 (E3LR34) Probable small nuclear ribonucleoprotein Sm D2 × 2 (Q18786) Probable small nuclear ribonucleoprotein E × 2 (Q9XTU6) Probable small nuclear ribonucleoprotein F × 2 (P34659) Probable small nuclear ribonucleoprotein G × 2 (Q9N4G9) ;Probable U2 small nuclear ribonucleoprotein A' ; × 1 (Q9BLB6) RRM domain-containing protein × 1 (Q21323) Pre-mRNA-processing factor 19 × 4 (Q10051) Peptidyl-prolyl cis-trans isomerase E × 1 (Q9U2S6) Intron lariat RNA × 1 MAGNESIUM ION × 7 INOSITOL HEXAKISPHOSPHATE × 2 GUANOSINE-5'-TRIPHOSPHATE × 1 ZINC ION × 6 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name G5ECH1_CAEEL
Isoform —
PDB entities 17
Chains and sequence ranges Author chain PX; PDBConstruct 1–809; UniProt 1–809

Intron-binding protein aquarius

OrganismNot specified

UniProt Q9U1Q7

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Other combination Heteromer Protein 42 DNA 1 RNA 3 U2 snRNA × 1 U5 snRNA × 1 U6 snRNA × 1 Pre-mRNA-splicing factor 8 homolog × 1 (P34369) U5 small nuclear ribonucleoprotein 200 kDa helicase × 1 (Q9U2G0) Tr-type G domain-containing protein × 1 (Q23463) Protein isy-1 × 1 (Q20716) WD_REPEATS_REGION domain-containing protein × 1 (Q19211) Pre-mRNA-splicing factor SYF1 × 1 (P91175) TPR_REGION domain-containing protein × 1 (O16376) Pre-mRNA-splicing factor SPF27 × 1 (Q22417) Cell division cycle 5-like protein × 1 (G5EFC4) Pre-mRNA-splicing factor syf-2 × 1 (Q09385) Protein BUD31 homolog × 1 (P34313) Pre-mRNA-splicing factor RBM22 × 1 (Q22412) Spliceosome-associated protein CWC15 homolog × 1 (O45766) GCF C-terminal domain-containing protein × 1 (G5ECH1) Uncharacterized protein T27F2.1 × 1 (Q22836) Peptidyl-prolyl cis-trans isomerase × 1 (Q18445) WD_REPEATS_REGION domain-containing protein × 1 (G5EEL2) Septin and tuftelin-interacting protein 1 homolog × 1 (Q17784) WD_REPEATS_REGION domain-containing protein × 1 (O44729) Coiled-coil domain-containing protein 12 × 1 (Q95XJ1) Small nuclear ribonucleoprotein Sm D3 × 2 (Q17348) Probable small nuclear ribonucleoprotein-associated protein B × 2 (P91918) Small nuclear ribonucleoprotein Sm D1 × 2 (E3LR34) Probable small nuclear ribonucleoprotein Sm D2 × 2 (Q18786) Probable small nuclear ribonucleoprotein E × 2 (Q9XTU6) Probable small nuclear ribonucleoprotein F × 2 (P34659) Probable small nuclear ribonucleoprotein G × 2 (Q9N4G9) ;Probable U2 small nuclear ribonucleoprotein A' ; × 1 (Q9BLB6) RRM domain-containing protein × 1 (Q21323) Pre-mRNA-processing factor 19 × 4 (Q10051) Peptidyl-prolyl cis-trans isomerase E × 1 (Q9U2S6) Intron lariat RNA × 1 MAGNESIUM ION × 7 INOSITOL HEXAKISPHOSPHATE × 2 GUANOSINE-5'-TRIPHOSPHATE × 1 ZINC ION × 6 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name Q9U1Q7_CAEEL
Isoform —
PDB entities 18
Chains and sequence ranges Author chain Q; PDBConstruct 1–1467; UniProt 1–1467

Uncharacterized protein T27F2.1

OrganismNot specified

UniProt Q22836

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Other combination Heteromer Protein 42 DNA 1 RNA 3 U2 snRNA × 1 U5 snRNA × 1 U6 snRNA × 1 Pre-mRNA-splicing factor 8 homolog × 1 (P34369) U5 small nuclear ribonucleoprotein 200 kDa helicase × 1 (Q9U2G0) Tr-type G domain-containing protein × 1 (Q23463) Protein isy-1 × 1 (Q20716) WD_REPEATS_REGION domain-containing protein × 1 (Q19211) Pre-mRNA-splicing factor SYF1 × 1 (P91175) TPR_REGION domain-containing protein × 1 (O16376) Pre-mRNA-splicing factor SPF27 × 1 (Q22417) Cell division cycle 5-like protein × 1 (G5EFC4) Pre-mRNA-splicing factor syf-2 × 1 (Q09385) Protein BUD31 homolog × 1 (P34313) Pre-mRNA-splicing factor RBM22 × 1 (Q22412) Spliceosome-associated protein CWC15 homolog × 1 (O45766) GCF C-terminal domain-containing protein × 1 (G5ECH1) Intron-binding protein aquarius × 1 (Q9U1Q7) Peptidyl-prolyl cis-trans isomerase × 1 (Q18445) WD_REPEATS_REGION domain-containing protein × 1 (G5EEL2) Septin and tuftelin-interacting protein 1 homolog × 1 (Q17784) WD_REPEATS_REGION domain-containing protein × 1 (O44729) Coiled-coil domain-containing protein 12 × 1 (Q95XJ1) Small nuclear ribonucleoprotein Sm D3 × 2 (Q17348) Probable small nuclear ribonucleoprotein-associated protein B × 2 (P91918) Small nuclear ribonucleoprotein Sm D1 × 2 (E3LR34) Probable small nuclear ribonucleoprotein Sm D2 × 2 (Q18786) Probable small nuclear ribonucleoprotein E × 2 (Q9XTU6) Probable small nuclear ribonucleoprotein F × 2 (P34659) Probable small nuclear ribonucleoprotein G × 2 (Q9N4G9) ;Probable U2 small nuclear ribonucleoprotein A' ; × 1 (Q9BLB6) RRM domain-containing protein × 1 (Q21323) Pre-mRNA-processing factor 19 × 4 (Q10051) Peptidyl-prolyl cis-trans isomerase E × 1 (Q9U2S6) Intron lariat RNA × 1 MAGNESIUM ION × 7 INOSITOL HEXAKISPHOSPHATE × 2 GUANOSINE-5'-TRIPHOSPHATE × 1 ZINC ION × 6 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name YGH1_CAEEL
Isoform —
PDB entities 19
Chains and sequence ranges Author chain R; PDBConstruct 1–535; UniProt 1–535

Peptidyl-prolyl cis-trans isomerase

OrganismNot specified

UniProt Q18445

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Other combination Heteromer Protein 42 DNA 1 RNA 3 U2 snRNA × 1 U5 snRNA × 1 U6 snRNA × 1 Pre-mRNA-splicing factor 8 homolog × 1 (P34369) U5 small nuclear ribonucleoprotein 200 kDa helicase × 1 (Q9U2G0) Tr-type G domain-containing protein × 1 (Q23463) Protein isy-1 × 1 (Q20716) WD_REPEATS_REGION domain-containing protein × 1 (Q19211) Pre-mRNA-splicing factor SYF1 × 1 (P91175) TPR_REGION domain-containing protein × 1 (O16376) Pre-mRNA-splicing factor SPF27 × 1 (Q22417) Cell division cycle 5-like protein × 1 (G5EFC4) Pre-mRNA-splicing factor syf-2 × 1 (Q09385) Protein BUD31 homolog × 1 (P34313) Pre-mRNA-splicing factor RBM22 × 1 (Q22412) Spliceosome-associated protein CWC15 homolog × 1 (O45766) GCF C-terminal domain-containing protein × 1 (G5ECH1) Intron-binding protein aquarius × 1 (Q9U1Q7) Uncharacterized protein T27F2.1 × 1 (Q22836) WD_REPEATS_REGION domain-containing protein × 1 (G5EEL2) Septin and tuftelin-interacting protein 1 homolog × 1 (Q17784) WD_REPEATS_REGION domain-containing protein × 1 (O44729) Coiled-coil domain-containing protein 12 × 1 (Q95XJ1) Small nuclear ribonucleoprotein Sm D3 × 2 (Q17348) Probable small nuclear ribonucleoprotein-associated protein B × 2 (P91918) Small nuclear ribonucleoprotein Sm D1 × 2 (E3LR34) Probable small nuclear ribonucleoprotein Sm D2 × 2 (Q18786) Probable small nuclear ribonucleoprotein E × 2 (Q9XTU6) Probable small nuclear ribonucleoprotein F × 2 (P34659) Probable small nuclear ribonucleoprotein G × 2 (Q9N4G9) ;Probable U2 small nuclear ribonucleoprotein A' ; × 1 (Q9BLB6) RRM domain-containing protein × 1 (Q21323) Pre-mRNA-processing factor 19 × 4 (Q10051) Peptidyl-prolyl cis-trans isomerase E × 1 (Q9U2S6) Intron lariat RNA × 1 MAGNESIUM ION × 7 INOSITOL HEXAKISPHOSPHATE × 2 GUANOSINE-5'-TRIPHOSPHATE × 1 ZINC ION × 6 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name Q18445_CAEEL
Isoform —
PDB entities 20
Chains and sequence ranges Author chain S; PDBConstruct 1–169; UniProt 1–169

WD_REPEATS_REGION domain-containing protein

OrganismNot specified

UniProt G5EEL2

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Other combination Heteromer Protein 42 DNA 1 RNA 3 U2 snRNA × 1 U5 snRNA × 1 U6 snRNA × 1 Pre-mRNA-splicing factor 8 homolog × 1 (P34369) U5 small nuclear ribonucleoprotein 200 kDa helicase × 1 (Q9U2G0) Tr-type G domain-containing protein × 1 (Q23463) Protein isy-1 × 1 (Q20716) WD_REPEATS_REGION domain-containing protein × 1 (Q19211) Pre-mRNA-splicing factor SYF1 × 1 (P91175) TPR_REGION domain-containing protein × 1 (O16376) Pre-mRNA-splicing factor SPF27 × 1 (Q22417) Cell division cycle 5-like protein × 1 (G5EFC4) Pre-mRNA-splicing factor syf-2 × 1 (Q09385) Protein BUD31 homolog × 1 (P34313) Pre-mRNA-splicing factor RBM22 × 1 (Q22412) Spliceosome-associated protein CWC15 homolog × 1 (O45766) GCF C-terminal domain-containing protein × 1 (G5ECH1) Intron-binding protein aquarius × 1 (Q9U1Q7) Uncharacterized protein T27F2.1 × 1 (Q22836) Peptidyl-prolyl cis-trans isomerase × 1 (Q18445) Septin and tuftelin-interacting protein 1 homolog × 1 (Q17784) WD_REPEATS_REGION domain-containing protein × 1 (O44729) Coiled-coil domain-containing protein 12 × 1 (Q95XJ1) Small nuclear ribonucleoprotein Sm D3 × 2 (Q17348) Probable small nuclear ribonucleoprotein-associated protein B × 2 (P91918) Small nuclear ribonucleoprotein Sm D1 × 2 (E3LR34) Probable small nuclear ribonucleoprotein Sm D2 × 2 (Q18786) Probable small nuclear ribonucleoprotein E × 2 (Q9XTU6) Probable small nuclear ribonucleoprotein F × 2 (P34659) Probable small nuclear ribonucleoprotein G × 2 (Q9N4G9) ;Probable U2 small nuclear ribonucleoprotein A' ; × 1 (Q9BLB6) RRM domain-containing protein × 1 (Q21323) Pre-mRNA-processing factor 19 × 4 (Q10051) Peptidyl-prolyl cis-trans isomerase E × 1 (Q9U2S6) Intron lariat RNA × 1 MAGNESIUM ION × 7 INOSITOL HEXAKISPHOSPHATE × 2 GUANOSINE-5'-TRIPHOSPHATE × 1 ZINC ION × 6 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name G5EEL2_CAEEL
Isoform —
PDB entities 21
Chains and sequence ranges Author chain T; PDBConstruct 1–494; UniProt 1–494

Septin and tuftelin-interacting protein 1 homolog

OrganismNot specified

UniProt Q17784

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Other combination Heteromer Protein 42 DNA 1 RNA 3 U2 snRNA × 1 U5 snRNA × 1 U6 snRNA × 1 Pre-mRNA-splicing factor 8 homolog × 1 (P34369) U5 small nuclear ribonucleoprotein 200 kDa helicase × 1 (Q9U2G0) Tr-type G domain-containing protein × 1 (Q23463) Protein isy-1 × 1 (Q20716) WD_REPEATS_REGION domain-containing protein × 1 (Q19211) Pre-mRNA-splicing factor SYF1 × 1 (P91175) TPR_REGION domain-containing protein × 1 (O16376) Pre-mRNA-splicing factor SPF27 × 1 (Q22417) Cell division cycle 5-like protein × 1 (G5EFC4) Pre-mRNA-splicing factor syf-2 × 1 (Q09385) Protein BUD31 homolog × 1 (P34313) Pre-mRNA-splicing factor RBM22 × 1 (Q22412) Spliceosome-associated protein CWC15 homolog × 1 (O45766) GCF C-terminal domain-containing protein × 1 (G5ECH1) Intron-binding protein aquarius × 1 (Q9U1Q7) Uncharacterized protein T27F2.1 × 1 (Q22836) Peptidyl-prolyl cis-trans isomerase × 1 (Q18445) WD_REPEATS_REGION domain-containing protein × 1 (G5EEL2) WD_REPEATS_REGION domain-containing protein × 1 (O44729) Coiled-coil domain-containing protein 12 × 1 (Q95XJ1) Small nuclear ribonucleoprotein Sm D3 × 2 (Q17348) Probable small nuclear ribonucleoprotein-associated protein B × 2 (P91918) Small nuclear ribonucleoprotein Sm D1 × 2 (E3LR34) Probable small nuclear ribonucleoprotein Sm D2 × 2 (Q18786) Probable small nuclear ribonucleoprotein E × 2 (Q9XTU6) Probable small nuclear ribonucleoprotein F × 2 (P34659) Probable small nuclear ribonucleoprotein G × 2 (Q9N4G9) ;Probable U2 small nuclear ribonucleoprotein A' ; × 1 (Q9BLB6) RRM domain-containing protein × 1 (Q21323) Pre-mRNA-processing factor 19 × 4 (Q10051) Peptidyl-prolyl cis-trans isomerase E × 1 (Q9U2S6) Intron lariat RNA × 1 MAGNESIUM ION × 7 INOSITOL HEXAKISPHOSPHATE × 2 GUANOSINE-5'-TRIPHOSPHATE × 1 ZINC ION × 6 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name TFP11_CAEEL
Isoform —
PDB entities 22
Chains and sequence ranges Author chain TF; PDBConstruct 1–830; UniProt 1–830

WD_REPEATS_REGION domain-containing protein

OrganismNot specified

UniProt O44729

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Other combination Heteromer Protein 42 DNA 1 RNA 3 U2 snRNA × 1 U5 snRNA × 1 U6 snRNA × 1 Pre-mRNA-splicing factor 8 homolog × 1 (P34369) U5 small nuclear ribonucleoprotein 200 kDa helicase × 1 (Q9U2G0) Tr-type G domain-containing protein × 1 (Q23463) Protein isy-1 × 1 (Q20716) WD_REPEATS_REGION domain-containing protein × 1 (Q19211) Pre-mRNA-splicing factor SYF1 × 1 (P91175) TPR_REGION domain-containing protein × 1 (O16376) Pre-mRNA-splicing factor SPF27 × 1 (Q22417) Cell division cycle 5-like protein × 1 (G5EFC4) Pre-mRNA-splicing factor syf-2 × 1 (Q09385) Protein BUD31 homolog × 1 (P34313) Pre-mRNA-splicing factor RBM22 × 1 (Q22412) Spliceosome-associated protein CWC15 homolog × 1 (O45766) GCF C-terminal domain-containing protein × 1 (G5ECH1) Intron-binding protein aquarius × 1 (Q9U1Q7) Uncharacterized protein T27F2.1 × 1 (Q22836) Peptidyl-prolyl cis-trans isomerase × 1 (Q18445) WD_REPEATS_REGION domain-containing protein × 1 (G5EEL2) Septin and tuftelin-interacting protein 1 homolog × 1 (Q17784) Coiled-coil domain-containing protein 12 × 1 (Q95XJ1) Small nuclear ribonucleoprotein Sm D3 × 2 (Q17348) Probable small nuclear ribonucleoprotein-associated protein B × 2 (P91918) Small nuclear ribonucleoprotein Sm D1 × 2 (E3LR34) Probable small nuclear ribonucleoprotein Sm D2 × 2 (Q18786) Probable small nuclear ribonucleoprotein E × 2 (Q9XTU6) Probable small nuclear ribonucleoprotein F × 2 (P34659) Probable small nuclear ribonucleoprotein G × 2 (Q9N4G9) ;Probable U2 small nuclear ribonucleoprotein A' ; × 1 (Q9BLB6) RRM domain-containing protein × 1 (Q21323) Pre-mRNA-processing factor 19 × 4 (Q10051) Peptidyl-prolyl cis-trans isomerase E × 1 (Q9U2S6) Intron lariat RNA × 1 MAGNESIUM ION × 7 INOSITOL HEXAKISPHOSPHATE × 2 GUANOSINE-5'-TRIPHOSPHATE × 1 ZINC ION × 6 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name O44729_CAEEL
Isoform —
PDB entities 23
Chains and sequence ranges Author chain W; PDBConstruct 1–567; UniProt 1–567

Coiled-coil domain-containing protein 12

OrganismNot specified

UniProt Q95XJ1

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Other combination Heteromer Protein 42 DNA 1 RNA 3 U2 snRNA × 1 U5 snRNA × 1 U6 snRNA × 1 Pre-mRNA-splicing factor 8 homolog × 1 (P34369) U5 small nuclear ribonucleoprotein 200 kDa helicase × 1 (Q9U2G0) Tr-type G domain-containing protein × 1 (Q23463) Protein isy-1 × 1 (Q20716) WD_REPEATS_REGION domain-containing protein × 1 (Q19211) Pre-mRNA-splicing factor SYF1 × 1 (P91175) TPR_REGION domain-containing protein × 1 (O16376) Pre-mRNA-splicing factor SPF27 × 1 (Q22417) Cell division cycle 5-like protein × 1 (G5EFC4) Pre-mRNA-splicing factor syf-2 × 1 (Q09385) Protein BUD31 homolog × 1 (P34313) Pre-mRNA-splicing factor RBM22 × 1 (Q22412) Spliceosome-associated protein CWC15 homolog × 1 (O45766) GCF C-terminal domain-containing protein × 1 (G5ECH1) Intron-binding protein aquarius × 1 (Q9U1Q7) Uncharacterized protein T27F2.1 × 1 (Q22836) Peptidyl-prolyl cis-trans isomerase × 1 (Q18445) WD_REPEATS_REGION domain-containing protein × 1 (G5EEL2) Septin and tuftelin-interacting protein 1 homolog × 1 (Q17784) WD_REPEATS_REGION domain-containing protein × 1 (O44729) Small nuclear ribonucleoprotein Sm D3 × 2 (Q17348) Probable small nuclear ribonucleoprotein-associated protein B × 2 (P91918) Small nuclear ribonucleoprotein Sm D1 × 2 (E3LR34) Probable small nuclear ribonucleoprotein Sm D2 × 2 (Q18786) Probable small nuclear ribonucleoprotein E × 2 (Q9XTU6) Probable small nuclear ribonucleoprotein F × 2 (P34659) Probable small nuclear ribonucleoprotein G × 2 (Q9N4G9) ;Probable U2 small nuclear ribonucleoprotein A' ; × 1 (Q9BLB6) RRM domain-containing protein × 1 (Q21323) Pre-mRNA-processing factor 19 × 4 (Q10051) Peptidyl-prolyl cis-trans isomerase E × 1 (Q9U2S6) Intron lariat RNA × 1 MAGNESIUM ION × 7 INOSITOL HEXAKISPHOSPHATE × 2 GUANOSINE-5'-TRIPHOSPHATE × 1 ZINC ION × 6 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name Q95XJ1_CAEEL
Isoform —
PDB entities 24
Chains and sequence ranges Author chain Z; PDBConstruct 1–169; UniProt 1–169

Small nuclear ribonucleoprotein Sm D3

OrganismNot specified

UniProt Q17348

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Other combination Heteromer Protein 42 DNA 1 RNA 3 U2 snRNA × 1 U5 snRNA × 1 U6 snRNA × 1 Pre-mRNA-splicing factor 8 homolog × 1 (P34369) U5 small nuclear ribonucleoprotein 200 kDa helicase × 1 (Q9U2G0) Tr-type G domain-containing protein × 1 (Q23463) Protein isy-1 × 1 (Q20716) WD_REPEATS_REGION domain-containing protein × 1 (Q19211) Pre-mRNA-splicing factor SYF1 × 1 (P91175) TPR_REGION domain-containing protein × 1 (O16376) Pre-mRNA-splicing factor SPF27 × 1 (Q22417) Cell division cycle 5-like protein × 1 (G5EFC4) Pre-mRNA-splicing factor syf-2 × 1 (Q09385) Protein BUD31 homolog × 1 (P34313) Pre-mRNA-splicing factor RBM22 × 1 (Q22412) Spliceosome-associated protein CWC15 homolog × 1 (O45766) GCF C-terminal domain-containing protein × 1 (G5ECH1) Intron-binding protein aquarius × 1 (Q9U1Q7) Uncharacterized protein T27F2.1 × 1 (Q22836) Peptidyl-prolyl cis-trans isomerase × 1 (Q18445) WD_REPEATS_REGION domain-containing protein × 1 (G5EEL2) Septin and tuftelin-interacting protein 1 homolog × 1 (Q17784) WD_REPEATS_REGION domain-containing protein × 1 (O44729) Coiled-coil domain-containing protein 12 × 1 (Q95XJ1) Probable small nuclear ribonucleoprotein-associated protein B × 2 (P91918) Small nuclear ribonucleoprotein Sm D1 × 2 (E3LR34) Probable small nuclear ribonucleoprotein Sm D2 × 2 (Q18786) Probable small nuclear ribonucleoprotein E × 2 (Q9XTU6) Probable small nuclear ribonucleoprotein F × 2 (P34659) Probable small nuclear ribonucleoprotein G × 2 (Q9N4G9) ;Probable U2 small nuclear ribonucleoprotein A' ; × 1 (Q9BLB6) RRM domain-containing protein × 1 (Q21323) Pre-mRNA-processing factor 19 × 4 (Q10051) Peptidyl-prolyl cis-trans isomerase E × 1 (Q9U2S6) Intron lariat RNA × 1 MAGNESIUM ION × 7 INOSITOL HEXAKISPHOSPHATE × 2 GUANOSINE-5'-TRIPHOSPHATE × 1 ZINC ION × 6 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name SMD3_CAEEL
Isoform —
PDB entities 25
Chains and sequence ranges Author chain a; PDBConstruct 1–136; UniProt 1–136 Author chain h; PDBConstruct 1–136; UniProt 1–136

Probable small nuclear ribonucleoprotein-associated protein B

OrganismNot specified

UniProt P91918

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Other combination Heteromer Protein 42 DNA 1 RNA 3 U2 snRNA × 1 U5 snRNA × 1 U6 snRNA × 1 Pre-mRNA-splicing factor 8 homolog × 1 (P34369) U5 small nuclear ribonucleoprotein 200 kDa helicase × 1 (Q9U2G0) Tr-type G domain-containing protein × 1 (Q23463) Protein isy-1 × 1 (Q20716) WD_REPEATS_REGION domain-containing protein × 1 (Q19211) Pre-mRNA-splicing factor SYF1 × 1 (P91175) TPR_REGION domain-containing protein × 1 (O16376) Pre-mRNA-splicing factor SPF27 × 1 (Q22417) Cell division cycle 5-like protein × 1 (G5EFC4) Pre-mRNA-splicing factor syf-2 × 1 (Q09385) Protein BUD31 homolog × 1 (P34313) Pre-mRNA-splicing factor RBM22 × 1 (Q22412) Spliceosome-associated protein CWC15 homolog × 1 (O45766) GCF C-terminal domain-containing protein × 1 (G5ECH1) Intron-binding protein aquarius × 1 (Q9U1Q7) Uncharacterized protein T27F2.1 × 1 (Q22836) Peptidyl-prolyl cis-trans isomerase × 1 (Q18445) WD_REPEATS_REGION domain-containing protein × 1 (G5EEL2) Septin and tuftelin-interacting protein 1 homolog × 1 (Q17784) WD_REPEATS_REGION domain-containing protein × 1 (O44729) Coiled-coil domain-containing protein 12 × 1 (Q95XJ1) Small nuclear ribonucleoprotein Sm D3 × 2 (Q17348) Small nuclear ribonucleoprotein Sm D1 × 2 (E3LR34) Probable small nuclear ribonucleoprotein Sm D2 × 2 (Q18786) Probable small nuclear ribonucleoprotein E × 2 (Q9XTU6) Probable small nuclear ribonucleoprotein F × 2 (P34659) Probable small nuclear ribonucleoprotein G × 2 (Q9N4G9) ;Probable U2 small nuclear ribonucleoprotein A' ; × 1 (Q9BLB6) RRM domain-containing protein × 1 (Q21323) Pre-mRNA-processing factor 19 × 4 (Q10051) Peptidyl-prolyl cis-trans isomerase E × 1 (Q9U2S6) Intron lariat RNA × 1 MAGNESIUM ION × 7 INOSITOL HEXAKISPHOSPHATE × 2 GUANOSINE-5'-TRIPHOSPHATE × 1 ZINC ION × 6 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name RSMB_CAEEL
Isoform —
PDB entities 26
Chains and sequence ranges Author chain b; PDBConstruct 1–160; UniProt 1–160 Author chain i; PDBConstruct 1–160; UniProt 1–160

Small nuclear ribonucleoprotein Sm D1

OrganismNot specified

UniProt E3LR34

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Other combination Heteromer Protein 42 DNA 1 RNA 3 U2 snRNA × 1 U5 snRNA × 1 U6 snRNA × 1 Pre-mRNA-splicing factor 8 homolog × 1 (P34369) U5 small nuclear ribonucleoprotein 200 kDa helicase × 1 (Q9U2G0) Tr-type G domain-containing protein × 1 (Q23463) Protein isy-1 × 1 (Q20716) WD_REPEATS_REGION domain-containing protein × 1 (Q19211) Pre-mRNA-splicing factor SYF1 × 1 (P91175) TPR_REGION domain-containing protein × 1 (O16376) Pre-mRNA-splicing factor SPF27 × 1 (Q22417) Cell division cycle 5-like protein × 1 (G5EFC4) Pre-mRNA-splicing factor syf-2 × 1 (Q09385) Protein BUD31 homolog × 1 (P34313) Pre-mRNA-splicing factor RBM22 × 1 (Q22412) Spliceosome-associated protein CWC15 homolog × 1 (O45766) GCF C-terminal domain-containing protein × 1 (G5ECH1) Intron-binding protein aquarius × 1 (Q9U1Q7) Uncharacterized protein T27F2.1 × 1 (Q22836) Peptidyl-prolyl cis-trans isomerase × 1 (Q18445) WD_REPEATS_REGION domain-containing protein × 1 (G5EEL2) Septin and tuftelin-interacting protein 1 homolog × 1 (Q17784) WD_REPEATS_REGION domain-containing protein × 1 (O44729) Coiled-coil domain-containing protein 12 × 1 (Q95XJ1) Small nuclear ribonucleoprotein Sm D3 × 2 (Q17348) Probable small nuclear ribonucleoprotein-associated protein B × 2 (P91918) Probable small nuclear ribonucleoprotein Sm D2 × 2 (Q18786) Probable small nuclear ribonucleoprotein E × 2 (Q9XTU6) Probable small nuclear ribonucleoprotein F × 2 (P34659) Probable small nuclear ribonucleoprotein G × 2 (Q9N4G9) ;Probable U2 small nuclear ribonucleoprotein A' ; × 1 (Q9BLB6) RRM domain-containing protein × 1 (Q21323) Pre-mRNA-processing factor 19 × 4 (Q10051) Peptidyl-prolyl cis-trans isomerase E × 1 (Q9U2S6) Intron lariat RNA × 1 MAGNESIUM ION × 7 INOSITOL HEXAKISPHOSPHATE × 2 GUANOSINE-5'-TRIPHOSPHATE × 1 ZINC ION × 6 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name E3LR34_CAERE
Isoform —
PDB entities 27
Chains and sequence ranges Author chain c; PDBConstruct 1–127; UniProt 1–127 Author chain j; PDBConstruct 1–127; UniProt 1–127

Probable small nuclear ribonucleoprotein Sm D2

OrganismNot specified

UniProt Q18786

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Other combination Heteromer Protein 42 DNA 1 RNA 3 U2 snRNA × 1 U5 snRNA × 1 U6 snRNA × 1 Pre-mRNA-splicing factor 8 homolog × 1 (P34369) U5 small nuclear ribonucleoprotein 200 kDa helicase × 1 (Q9U2G0) Tr-type G domain-containing protein × 1 (Q23463) Protein isy-1 × 1 (Q20716) WD_REPEATS_REGION domain-containing protein × 1 (Q19211) Pre-mRNA-splicing factor SYF1 × 1 (P91175) TPR_REGION domain-containing protein × 1 (O16376) Pre-mRNA-splicing factor SPF27 × 1 (Q22417) Cell division cycle 5-like protein × 1 (G5EFC4) Pre-mRNA-splicing factor syf-2 × 1 (Q09385) Protein BUD31 homolog × 1 (P34313) Pre-mRNA-splicing factor RBM22 × 1 (Q22412) Spliceosome-associated protein CWC15 homolog × 1 (O45766) GCF C-terminal domain-containing protein × 1 (G5ECH1) Intron-binding protein aquarius × 1 (Q9U1Q7) Uncharacterized protein T27F2.1 × 1 (Q22836) Peptidyl-prolyl cis-trans isomerase × 1 (Q18445) WD_REPEATS_REGION domain-containing protein × 1 (G5EEL2) Septin and tuftelin-interacting protein 1 homolog × 1 (Q17784) WD_REPEATS_REGION domain-containing protein × 1 (O44729) Coiled-coil domain-containing protein 12 × 1 (Q95XJ1) Small nuclear ribonucleoprotein Sm D3 × 2 (Q17348) Probable small nuclear ribonucleoprotein-associated protein B × 2 (P91918) Small nuclear ribonucleoprotein Sm D1 × 2 (E3LR34) Probable small nuclear ribonucleoprotein E × 2 (Q9XTU6) Probable small nuclear ribonucleoprotein F × 2 (P34659) Probable small nuclear ribonucleoprotein G × 2 (Q9N4G9) ;Probable U2 small nuclear ribonucleoprotein A' ; × 1 (Q9BLB6) RRM domain-containing protein × 1 (Q21323) Pre-mRNA-processing factor 19 × 4 (Q10051) Peptidyl-prolyl cis-trans isomerase E × 1 (Q9U2S6) Intron lariat RNA × 1 MAGNESIUM ION × 7 INOSITOL HEXAKISPHOSPHATE × 2 GUANOSINE-5'-TRIPHOSPHATE × 1 ZINC ION × 6 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name SMD2_CAEEL
Isoform —
PDB entities 28
Chains and sequence ranges Author chain d; PDBConstruct 1–118; UniProt 1–118 Author chain k; PDBConstruct 1–118; UniProt 1–118

Probable small nuclear ribonucleoprotein E

OrganismNot specified

UniProt Q9XTU6

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Other combination Heteromer Protein 42 DNA 1 RNA 3 U2 snRNA × 1 U5 snRNA × 1 U6 snRNA × 1 Pre-mRNA-splicing factor 8 homolog × 1 (P34369) U5 small nuclear ribonucleoprotein 200 kDa helicase × 1 (Q9U2G0) Tr-type G domain-containing protein × 1 (Q23463) Protein isy-1 × 1 (Q20716) WD_REPEATS_REGION domain-containing protein × 1 (Q19211) Pre-mRNA-splicing factor SYF1 × 1 (P91175) TPR_REGION domain-containing protein × 1 (O16376) Pre-mRNA-splicing factor SPF27 × 1 (Q22417) Cell division cycle 5-like protein × 1 (G5EFC4) Pre-mRNA-splicing factor syf-2 × 1 (Q09385) Protein BUD31 homolog × 1 (P34313) Pre-mRNA-splicing factor RBM22 × 1 (Q22412) Spliceosome-associated protein CWC15 homolog × 1 (O45766) GCF C-terminal domain-containing protein × 1 (G5ECH1) Intron-binding protein aquarius × 1 (Q9U1Q7) Uncharacterized protein T27F2.1 × 1 (Q22836) Peptidyl-prolyl cis-trans isomerase × 1 (Q18445) WD_REPEATS_REGION domain-containing protein × 1 (G5EEL2) Septin and tuftelin-interacting protein 1 homolog × 1 (Q17784) WD_REPEATS_REGION domain-containing protein × 1 (O44729) Coiled-coil domain-containing protein 12 × 1 (Q95XJ1) Small nuclear ribonucleoprotein Sm D3 × 2 (Q17348) Probable small nuclear ribonucleoprotein-associated protein B × 2 (P91918) Small nuclear ribonucleoprotein Sm D1 × 2 (E3LR34) Probable small nuclear ribonucleoprotein Sm D2 × 2 (Q18786) Probable small nuclear ribonucleoprotein F × 2 (P34659) Probable small nuclear ribonucleoprotein G × 2 (Q9N4G9) ;Probable U2 small nuclear ribonucleoprotein A' ; × 1 (Q9BLB6) RRM domain-containing protein × 1 (Q21323) Pre-mRNA-processing factor 19 × 4 (Q10051) Peptidyl-prolyl cis-trans isomerase E × 1 (Q9U2S6) Intron lariat RNA × 1 MAGNESIUM ION × 7 INOSITOL HEXAKISPHOSPHATE × 2 GUANOSINE-5'-TRIPHOSPHATE × 1 ZINC ION × 6 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name RUXE_CAEEL
Isoform —
PDB entities 29
Chains and sequence ranges Author chain e; PDBConstruct 1–90; UniProt 1–90 Author chain l; PDBConstruct 1–90; UniProt 1–90

Probable small nuclear ribonucleoprotein F

OrganismNot specified

UniProt P34659

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Other combination Heteromer Protein 42 DNA 1 RNA 3 U2 snRNA × 1 U5 snRNA × 1 U6 snRNA × 1 Pre-mRNA-splicing factor 8 homolog × 1 (P34369) U5 small nuclear ribonucleoprotein 200 kDa helicase × 1 (Q9U2G0) Tr-type G domain-containing protein × 1 (Q23463) Protein isy-1 × 1 (Q20716) WD_REPEATS_REGION domain-containing protein × 1 (Q19211) Pre-mRNA-splicing factor SYF1 × 1 (P91175) TPR_REGION domain-containing protein × 1 (O16376) Pre-mRNA-splicing factor SPF27 × 1 (Q22417) Cell division cycle 5-like protein × 1 (G5EFC4) Pre-mRNA-splicing factor syf-2 × 1 (Q09385) Protein BUD31 homolog × 1 (P34313) Pre-mRNA-splicing factor RBM22 × 1 (Q22412) Spliceosome-associated protein CWC15 homolog × 1 (O45766) GCF C-terminal domain-containing protein × 1 (G5ECH1) Intron-binding protein aquarius × 1 (Q9U1Q7) Uncharacterized protein T27F2.1 × 1 (Q22836) Peptidyl-prolyl cis-trans isomerase × 1 (Q18445) WD_REPEATS_REGION domain-containing protein × 1 (G5EEL2) Septin and tuftelin-interacting protein 1 homolog × 1 (Q17784) WD_REPEATS_REGION domain-containing protein × 1 (O44729) Coiled-coil domain-containing protein 12 × 1 (Q95XJ1) Small nuclear ribonucleoprotein Sm D3 × 2 (Q17348) Probable small nuclear ribonucleoprotein-associated protein B × 2 (P91918) Small nuclear ribonucleoprotein Sm D1 × 2 (E3LR34) Probable small nuclear ribonucleoprotein Sm D2 × 2 (Q18786) Probable small nuclear ribonucleoprotein E × 2 (Q9XTU6) Probable small nuclear ribonucleoprotein G × 2 (Q9N4G9) ;Probable U2 small nuclear ribonucleoprotein A' ; × 1 (Q9BLB6) RRM domain-containing protein × 1 (Q21323) Pre-mRNA-processing factor 19 × 4 (Q10051) Peptidyl-prolyl cis-trans isomerase E × 1 (Q9U2S6) Intron lariat RNA × 1 MAGNESIUM ION × 7 INOSITOL HEXAKISPHOSPHATE × 2 GUANOSINE-5'-TRIPHOSPHATE × 1 ZINC ION × 6 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name RUXF_CAEEL
Isoform —
PDB entities 30
Chains and sequence ranges Author chain f; PDBConstruct 1–85; UniProt 1–85 Author chain m; PDBConstruct 1–85; UniProt 1–85

Probable small nuclear ribonucleoprotein G

OrganismNot specified

UniProt Q9N4G9

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Other combination Heteromer Protein 42 DNA 1 RNA 3 U2 snRNA × 1 U5 snRNA × 1 U6 snRNA × 1 Pre-mRNA-splicing factor 8 homolog × 1 (P34369) U5 small nuclear ribonucleoprotein 200 kDa helicase × 1 (Q9U2G0) Tr-type G domain-containing protein × 1 (Q23463) Protein isy-1 × 1 (Q20716) WD_REPEATS_REGION domain-containing protein × 1 (Q19211) Pre-mRNA-splicing factor SYF1 × 1 (P91175) TPR_REGION domain-containing protein × 1 (O16376) Pre-mRNA-splicing factor SPF27 × 1 (Q22417) Cell division cycle 5-like protein × 1 (G5EFC4) Pre-mRNA-splicing factor syf-2 × 1 (Q09385) Protein BUD31 homolog × 1 (P34313) Pre-mRNA-splicing factor RBM22 × 1 (Q22412) Spliceosome-associated protein CWC15 homolog × 1 (O45766) GCF C-terminal domain-containing protein × 1 (G5ECH1) Intron-binding protein aquarius × 1 (Q9U1Q7) Uncharacterized protein T27F2.1 × 1 (Q22836) Peptidyl-prolyl cis-trans isomerase × 1 (Q18445) WD_REPEATS_REGION domain-containing protein × 1 (G5EEL2) Septin and tuftelin-interacting protein 1 homolog × 1 (Q17784) WD_REPEATS_REGION domain-containing protein × 1 (O44729) Coiled-coil domain-containing protein 12 × 1 (Q95XJ1) Small nuclear ribonucleoprotein Sm D3 × 2 (Q17348) Probable small nuclear ribonucleoprotein-associated protein B × 2 (P91918) Small nuclear ribonucleoprotein Sm D1 × 2 (E3LR34) Probable small nuclear ribonucleoprotein Sm D2 × 2 (Q18786) Probable small nuclear ribonucleoprotein E × 2 (Q9XTU6) Probable small nuclear ribonucleoprotein F × 2 (P34659) ;Probable U2 small nuclear ribonucleoprotein A' ; × 1 (Q9BLB6) RRM domain-containing protein × 1 (Q21323) Pre-mRNA-processing factor 19 × 4 (Q10051) Peptidyl-prolyl cis-trans isomerase E × 1 (Q9U2S6) Intron lariat RNA × 1 MAGNESIUM ION × 7 INOSITOL HEXAKISPHOSPHATE × 2 GUANOSINE-5'-TRIPHOSPHATE × 1 ZINC ION × 6 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name RUXG_CAEEL
Isoform —
PDB entities 31
Chains and sequence ranges Author chain g; PDBConstruct 1–77; UniProt 1–77 Author chain n; PDBConstruct 1–77; UniProt 1–77

;Probable U2 small nuclear ribonucleoprotein A' ;

OrganismNot specified

UniProt Q9BLB6

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Other combination Heteromer Protein 42 DNA 1 RNA 3 U2 snRNA × 1 U5 snRNA × 1 U6 snRNA × 1 Pre-mRNA-splicing factor 8 homolog × 1 (P34369) U5 small nuclear ribonucleoprotein 200 kDa helicase × 1 (Q9U2G0) Tr-type G domain-containing protein × 1 (Q23463) Protein isy-1 × 1 (Q20716) WD_REPEATS_REGION domain-containing protein × 1 (Q19211) Pre-mRNA-splicing factor SYF1 × 1 (P91175) TPR_REGION domain-containing protein × 1 (O16376) Pre-mRNA-splicing factor SPF27 × 1 (Q22417) Cell division cycle 5-like protein × 1 (G5EFC4) Pre-mRNA-splicing factor syf-2 × 1 (Q09385) Protein BUD31 homolog × 1 (P34313) Pre-mRNA-splicing factor RBM22 × 1 (Q22412) Spliceosome-associated protein CWC15 homolog × 1 (O45766) GCF C-terminal domain-containing protein × 1 (G5ECH1) Intron-binding protein aquarius × 1 (Q9U1Q7) Uncharacterized protein T27F2.1 × 1 (Q22836) Peptidyl-prolyl cis-trans isomerase × 1 (Q18445) WD_REPEATS_REGION domain-containing protein × 1 (G5EEL2) Septin and tuftelin-interacting protein 1 homolog × 1 (Q17784) WD_REPEATS_REGION domain-containing protein × 1 (O44729) Coiled-coil domain-containing protein 12 × 1 (Q95XJ1) Small nuclear ribonucleoprotein Sm D3 × 2 (Q17348) Probable small nuclear ribonucleoprotein-associated protein B × 2 (P91918) Small nuclear ribonucleoprotein Sm D1 × 2 (E3LR34) Probable small nuclear ribonucleoprotein Sm D2 × 2 (Q18786) Probable small nuclear ribonucleoprotein E × 2 (Q9XTU6) Probable small nuclear ribonucleoprotein F × 2 (P34659) Probable small nuclear ribonucleoprotein G × 2 (Q9N4G9) RRM domain-containing protein × 1 (Q21323) Pre-mRNA-processing factor 19 × 4 (Q10051) Peptidyl-prolyl cis-trans isomerase E × 1 (Q9U2S6) Intron lariat RNA × 1 MAGNESIUM ION × 7 INOSITOL HEXAKISPHOSPHATE × 2 GUANOSINE-5'-TRIPHOSPHATE × 1 ZINC ION × 6 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name RU2A_CAEEL
Isoform —
PDB entities 32
Chains and sequence ranges Author chain o; PDBConstruct 1–253; UniProt 1–253

RRM domain-containing protein

OrganismNot specified

UniProt Q21323

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Other combination Heteromer Protein 42 DNA 1 RNA 3 U2 snRNA × 1 U5 snRNA × 1 U6 snRNA × 1 Pre-mRNA-splicing factor 8 homolog × 1 (P34369) U5 small nuclear ribonucleoprotein 200 kDa helicase × 1 (Q9U2G0) Tr-type G domain-containing protein × 1 (Q23463) Protein isy-1 × 1 (Q20716) WD_REPEATS_REGION domain-containing protein × 1 (Q19211) Pre-mRNA-splicing factor SYF1 × 1 (P91175) TPR_REGION domain-containing protein × 1 (O16376) Pre-mRNA-splicing factor SPF27 × 1 (Q22417) Cell division cycle 5-like protein × 1 (G5EFC4) Pre-mRNA-splicing factor syf-2 × 1 (Q09385) Protein BUD31 homolog × 1 (P34313) Pre-mRNA-splicing factor RBM22 × 1 (Q22412) Spliceosome-associated protein CWC15 homolog × 1 (O45766) GCF C-terminal domain-containing protein × 1 (G5ECH1) Intron-binding protein aquarius × 1 (Q9U1Q7) Uncharacterized protein T27F2.1 × 1 (Q22836) Peptidyl-prolyl cis-trans isomerase × 1 (Q18445) WD_REPEATS_REGION domain-containing protein × 1 (G5EEL2) Septin and tuftelin-interacting protein 1 homolog × 1 (Q17784) WD_REPEATS_REGION domain-containing protein × 1 (O44729) Coiled-coil domain-containing protein 12 × 1 (Q95XJ1) Small nuclear ribonucleoprotein Sm D3 × 2 (Q17348) Probable small nuclear ribonucleoprotein-associated protein B × 2 (P91918) Small nuclear ribonucleoprotein Sm D1 × 2 (E3LR34) Probable small nuclear ribonucleoprotein Sm D2 × 2 (Q18786) Probable small nuclear ribonucleoprotein E × 2 (Q9XTU6) Probable small nuclear ribonucleoprotein F × 2 (P34659) Probable small nuclear ribonucleoprotein G × 2 (Q9N4G9) ;Probable U2 small nuclear ribonucleoprotein A' ; × 1 (Q9BLB6) Pre-mRNA-processing factor 19 × 4 (Q10051) Peptidyl-prolyl cis-trans isomerase E × 1 (Q9U2S6) Intron lariat RNA × 1 MAGNESIUM ION × 7 INOSITOL HEXAKISPHOSPHATE × 2 GUANOSINE-5'-TRIPHOSPHATE × 1 ZINC ION × 6 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name Q21323_CAEEL
Isoform —
PDB entities 33
Chains and sequence ranges Author chain p; PDBConstruct 1–217; UniProt 1–217

Pre-mRNA-processing factor 19

OrganismNot specified

UniProt Q10051

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Other combination Heteromer Protein 42 DNA 1 RNA 3 U2 snRNA × 1 U5 snRNA × 1 U6 snRNA × 1 Pre-mRNA-splicing factor 8 homolog × 1 (P34369) U5 small nuclear ribonucleoprotein 200 kDa helicase × 1 (Q9U2G0) Tr-type G domain-containing protein × 1 (Q23463) Protein isy-1 × 1 (Q20716) WD_REPEATS_REGION domain-containing protein × 1 (Q19211) Pre-mRNA-splicing factor SYF1 × 1 (P91175) TPR_REGION domain-containing protein × 1 (O16376) Pre-mRNA-splicing factor SPF27 × 1 (Q22417) Cell division cycle 5-like protein × 1 (G5EFC4) Pre-mRNA-splicing factor syf-2 × 1 (Q09385) Protein BUD31 homolog × 1 (P34313) Pre-mRNA-splicing factor RBM22 × 1 (Q22412) Spliceosome-associated protein CWC15 homolog × 1 (O45766) GCF C-terminal domain-containing protein × 1 (G5ECH1) Intron-binding protein aquarius × 1 (Q9U1Q7) Uncharacterized protein T27F2.1 × 1 (Q22836) Peptidyl-prolyl cis-trans isomerase × 1 (Q18445) WD_REPEATS_REGION domain-containing protein × 1 (G5EEL2) Septin and tuftelin-interacting protein 1 homolog × 1 (Q17784) WD_REPEATS_REGION domain-containing protein × 1 (O44729) Coiled-coil domain-containing protein 12 × 1 (Q95XJ1) Small nuclear ribonucleoprotein Sm D3 × 2 (Q17348) Probable small nuclear ribonucleoprotein-associated protein B × 2 (P91918) Small nuclear ribonucleoprotein Sm D1 × 2 (E3LR34) Probable small nuclear ribonucleoprotein Sm D2 × 2 (Q18786) Probable small nuclear ribonucleoprotein E × 2 (Q9XTU6) Probable small nuclear ribonucleoprotein F × 2 (P34659) Probable small nuclear ribonucleoprotein G × 2 (Q9N4G9) ;Probable U2 small nuclear ribonucleoprotein A' ; × 1 (Q9BLB6) RRM domain-containing protein × 1 (Q21323) Peptidyl-prolyl cis-trans isomerase E × 1 (Q9U2S6) Intron lariat RNA × 1 MAGNESIUM ION × 7 INOSITOL HEXAKISPHOSPHATE × 2 GUANOSINE-5'-TRIPHOSPHATE × 1 ZINC ION × 6 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name PRP19_CAEEL
Isoform —
PDB entities 34
Chains and sequence ranges Author chain q; PDBConstruct 1–492; UniProt 1–492 Author chain r; PDBConstruct 1–492; UniProt 1–492 Author chain s; PDBConstruct 1–492; UniProt 1–492 Author chain t; PDBConstruct 1–492; UniProt 1–492

Peptidyl-prolyl cis-trans isomerase E

OrganismNot specified

UniProt Q9U2S6

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Other combination Heteromer Protein 42 DNA 1 RNA 3 U2 snRNA × 1 U5 snRNA × 1 U6 snRNA × 1 Pre-mRNA-splicing factor 8 homolog × 1 (P34369) U5 small nuclear ribonucleoprotein 200 kDa helicase × 1 (Q9U2G0) Tr-type G domain-containing protein × 1 (Q23463) Protein isy-1 × 1 (Q20716) WD_REPEATS_REGION domain-containing protein × 1 (Q19211) Pre-mRNA-splicing factor SYF1 × 1 (P91175) TPR_REGION domain-containing protein × 1 (O16376) Pre-mRNA-splicing factor SPF27 × 1 (Q22417) Cell division cycle 5-like protein × 1 (G5EFC4) Pre-mRNA-splicing factor syf-2 × 1 (Q09385) Protein BUD31 homolog × 1 (P34313) Pre-mRNA-splicing factor RBM22 × 1 (Q22412) Spliceosome-associated protein CWC15 homolog × 1 (O45766) GCF C-terminal domain-containing protein × 1 (G5ECH1) Intron-binding protein aquarius × 1 (Q9U1Q7) Uncharacterized protein T27F2.1 × 1 (Q22836) Peptidyl-prolyl cis-trans isomerase × 1 (Q18445) WD_REPEATS_REGION domain-containing protein × 1 (G5EEL2) Septin and tuftelin-interacting protein 1 homolog × 1 (Q17784) WD_REPEATS_REGION domain-containing protein × 1 (O44729) Coiled-coil domain-containing protein 12 × 1 (Q95XJ1) Small nuclear ribonucleoprotein Sm D3 × 2 (Q17348) Probable small nuclear ribonucleoprotein-associated protein B × 2 (P91918) Small nuclear ribonucleoprotein Sm D1 × 2 (E3LR34) Probable small nuclear ribonucleoprotein Sm D2 × 2 (Q18786) Probable small nuclear ribonucleoprotein E × 2 (Q9XTU6) Probable small nuclear ribonucleoprotein F × 2 (P34659) Probable small nuclear ribonucleoprotein G × 2 (Q9N4G9) ;Probable U2 small nuclear ribonucleoprotein A' ; × 1 (Q9BLB6) RRM domain-containing protein × 1 (Q21323) Pre-mRNA-processing factor 19 × 4 (Q10051) Intron lariat RNA × 1 MAGNESIUM ION × 7 INOSITOL HEXAKISPHOSPHATE × 2 GUANOSINE-5'-TRIPHOSPHATE × 1 ZINC ION × 6 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name Q9U2S6_CAEEL
Isoform —
PDB entities 35
Chains and sequence ranges Author chain y; PDBConstruct 1–331; UniProt 1–331

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

▼

2. Structure Basics 2. Structure Basics

Entry ID entry_id8ro0
Deposition date deposition_date2024-01-11
Structure title titleStructure of the C. elegans Intron Lariat Spliceosome primed for disassembly (ILS')
Keywords keywordsmRNA, splicing, Intorn Lariat spliceosome, ILS, pre-mRNA; SPLICING
Experimental Method methodELECTRON MICROSCOPY
▼

3. Official assembly/model SAXS Official SAXS Profiles

This page reads only the latest assembly calculations. Every curve maps to an explicit PDB entry, official biological assembly and coordinate model.

8ro0__assembly_1__model_1

Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

Download this curve (.dat)

8ro0__assembly_1__model_1 | I(q)

10-2 10-1 106 107 108 109 1010 q (1/Angstrom) I(q)
100 plotted points; both axes use logarithmic scales.

8ro0__assembly_1__model_1 | P(r) · Pending

The new assembly/model P(r) has not been calculated yet This placeholder does not display legacy data r (Angstrom) P(r)
P(r) will be calculated and displayed separately for the same assembly/model.
Rg(Guinier)0.00 Å
Rg (electron density)105.70 Å
Total Rg105.50 Å
Atom count121370
Residues14602
Excluded volume2144100 ų
Maximum q0.500 Å⁻¹
Assembly Model Structure unit Oligomeric description Status CRYSOL Actions
1 1 8ro0__assembly_1__model_1 46-meric (46) Success 4.1.3-1-20251215 (887e7ef) View Download
▶

4. Crystallography and Experiment 4. Crystallography & Experiment

▶

5. Entities and Polymers Entities & Polymers (40)

▶

7. Citations (1)