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8sz4

Cryo-EM of the GDP-bound human dynamin polymer assembled on the membrane in the super constricted state showing the PH domain

Method: ELECTRON MICROSCOPY D_max: 91.4 Å Quality: GOOD

SAXS 散射曲线 SAXS Profile

P(r) 距离分布 P(r) Distribution

P(r) distribution for 8sz4

下载 Download SAXS (.dat) P(r) (.pr.out) CIF

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1. 结构基本信息 1. Structure Basics

条目编号 entry_id	8sz4
沉积日期 deposition_date	2023-05-26
结构标题 title	Cryo-EM of the GDP-bound human dynamin polymer assembled on the membrane in the super constricted state showing the PH domain
关键词 keywords	dynamin, membrane, fission, lipid, tubule, scission, endocytosis, HYDROLASE; HYDROLASE
实验方法 method	ELECTRON MICROSCOPY

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2. SAXS 参数 (CRYSOL 理论计算) 2. SAXS Parameters (CRYSOL)

回转半径 Rg (Guinier) rg_guinier	26.01 Å
回转半径 Rg (电子) rg_electron	25.40 Å
零角强度 I(0) i0	15895900.00
分子量 molecular_weight	30811.0 kDa
排除体积 excluded_volume	38780 Å³
包络体积 envelope_volume	51991 Å³
水化壳体积 shell_volume	18141 Å³
包络直径 envelope_diameter	94.2 Å
壳层 Rg shell_rg	30.68 Å
包络 Rg envelope_rg	25.31 Å
形状 Rg shape_rg	25.36 Å
总 Rg total_rg	26.22 Å
总原子数 total_atoms	4346
残基数 n_residues	259
球谐函数阶数 n_harmonics	20
q 范围 q_range	— – 0.5000 Å⁻¹
数据点数 n_points	101
壳层类型 shell_type	directional
溶剂电子密度 solvent_density	0.3340 e/Å³
壳层衬度 contrast_shell	0.0300 e/Å³
CRYSOL 版本 crysol_version	4.1.3

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3. P(r) 距离分布 (GNOM 反演) 3. P(r) Analysis (GNOM)

最大尺寸 Dmax dmax	91.4 Å
Rg (实空间) rg_real	26.20 Å
Rg 误差 (实空间) rg_real_error	0.92 Å
I(0) (实空间) i0_real	1.5900e+07
I(0) 误差 (实空间) i0_real_error	2.6780e+05
Rg (倒空间) rg_reciprocal	26.14 Å
I(0) (倒空间) i0_reciprocal	15900000.0000
解质量估计 total_estimate	0.8299
解质量评级 solution_quality	GOOD a GOOD solution
P(r) 峰数 n_peaks	2
主峰位置 r_peak_primary	21.0 Å
偏度 Skewness skewness	0.428
峰度 Kurtosis kurtosis	-0.457
角度范围 angular_range	— – 0.3050 Å⁻¹
当前正则化参数 α current_alpha	0.0000
最高正则化参数 α highest_alpha	3231000.0000
实空间数据点数 n_real_points	62
GNOM 版本 gnom_version	4.1.3
质量判据 quality_criteria	AN1: 0.000; Oscil: 0.732; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.601; Smooth: 0.989

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4. 晶体学与实验 4. Crystallography & Experiment

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5. 实体与聚合体信息 (1)

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7. 引用文献 (1)

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8. 文件与曲线 (10)