8uw7

Structure of AKT1(WT) with compound 3

Method: X-RAY DIFFRACTION Dmax: 92.1 Å Quality: REASONABLE

1. Protein Identity and Related Structures Protein Identity & Related Structures

RAC-alpha serine/threonine-protein kinase

Homo sapiens

UniProt P31749

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein heterocomplex Heteromer Protein × 2 PDB declaration: dimeric(2) Consistent with protein copy count Chain A; UniProt 2–446 Non-standard monomer:Yes (specific site not provided by mmCIF) NB41 × 1 EDO 1,2-ETHANEDIOL × 4 XOO 4-{2-[({4-[(2P)-2-(2-aminopyridin-3-yl)-5-phenyl-3H-imidazo[4,5-b]pyridin-3-yl]phenyl}methyl)amino]ethyl}-2-hydroxybenzaldehyde × 1 SO4 SULFATE ION × 4 X-RAY DIFFRACTION X-ray crystallization conditions:VAPOR DIFFUSION, HANGING DROP;pH 7.2;298 K;19% PEG3350, 200 mM Na2SO4, 100 mM BisTris Propane pH 7.2, 10% ethylene glycol Resolution 1.97 Å R-free 0.265

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

37 other PDB entries and 41 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name AKT1_HUMAN
Isoform
PDB entities 1
Chains and sequence ranges Author chain A; PDBConstruct 1–438; UniProt 2–446

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

SAXS scattering curve SAXS Profile

SAXS profile for 8uw7

P(r) Distance Distribution P(r) Distribution

P(r) distribution for 8uw7
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2. Structure Basics 2. Structure Basics

Entry ID entry_id8uw7
Deposition date deposition_date2023-11-06
Structure title titleStructure of AKT1(WT) with compound 3
Keywords keywordsInhibitor, Kinase, TRANSFERASE, TRANSFERASE-INHIBITOR complex; TRANSFERASE/INHIBITOR
Experimental Method methodX-RAY DIFFRACTION

3. SAXS Parameters (CRYSOL theoretical calculation) 3. SAXS Parameters (CRYSOL)

Radius of gyration Rg (Guinier) rg_guinier28.11
Radius of gyration Rg (electron density) rg_electron27.27
Forward intensity I(0) i058871400.00
Molecular weight molecular_weight59865.0 kDa
Excluded volume excluded_volume74885 ų
Envelope volume envelope_volume93831 ų
Hydration-shell volume shell_volume29798 ų
Envelope diameter envelope_diameter97.9
Shell Rg shell_rg33.50
Envelope Rg envelope_rg27.04
Shape Rg shape_rg27.23
Total Rg total_rg28.02
Total atoms total_atoms4225
Residues n_residues512
Spherical-harmonic order n_harmonics20
q range q_range— – 0.5000 −1
Data points n_points101
Shell type shell_typedirectional
Solvent electron density solvent_density0.3340 e/ų
Shell contrast contrast_shell0.0300 e/ų
CRYSOL version crysol_version4.1.3

4. P(r) Distance Distribution (GNOM inversion) 4. P(r) Analysis (GNOM)

Maximum dimension Dmax dmax92.1
Rg (real space) rg_real28.15
Rg uncertainty (real space) rg_real_error0.78
I(0) (real space) i0_real5.8870e+07
I(0) uncertainty (real space) i0_real_error8.8160e+05
Rg (reciprocal space) rg_reciprocal28.14
I(0) (reciprocal space) i0_reciprocal58870000.0000
Solution quality estimate total_estimate0.6438
Solution quality rating solution_quality REASONABLE a REASONABLE solution
P(r) peaks n_peaks1
Primary peak position r_peak_primary90.5
Skewness Skewness skewness0.361
Kurtosis Kurtosis kurtosis-0.355
Angular range angular_range— – 0.2800 −1
Current regularization parameter α current_alpha0.0000
Highest regularization parameter α highest_alpha17890000.0000
Real-space data points n_real_points57
GNOM version gnom_version4.1.3
Quality Criteria quality_criteria AN1: 0.000; Oscil: 0.893; Stabil: 0.999; Sysdev: 0.242; Positv: 1.000; Valcen: 0.961; Smooth: 0.000

5. Crystallography and Experiment 5. Crystallography & Experiment

6. Entities and Polymers Entities & Polymers (6)

8. Citations (1)

9. Files and Curves (10)