8ypk

mouse proteasome 20S subunit in complex with compound 1

Method: ELECTRON MICROSCOPY
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1. Protein Identity and Related Structures Protein Identity & Related Structures

Proteasome subunit beta type-6

OrganismNot specified

UniProt Q60692

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 28 Proteasome subunit alpha type-2 × 2 (P49722) Proteasome subunit alpha type-7 × 2 (Q9Z2U0) Proteasome subunit alpha type-6 × 2 (Q9QUM9) Proteasome subunit beta type-2 × 2 (Q9R1P3) Proteasome subunit beta type-1 × 2 (O09061) Proteasome subunit beta type-5 × 2 (O55234) Proteasome subunit alpha type-3 × 2 (O70435) Proteasome subunit alpha type-1 × 2 (Q9R1P4) Proteasome subunit alpha type-5 × 2 (Q9Z2U1) Proteasome subunit alpha type-4 × 2 (Q9R1P0) Proteasome subunit beta type-7 × 2 (P70195) Proteasome subunit beta type-4 × 2 (P99026) Proteasome subunit beta type-3 × 2 (Q9R1P1) [(1R)-1-[(1-cyclohexyl-1,2,3-triazol-4-yl)carbonylamino]-3-methyl-butyl]boronic acid × 4 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name PSB6_MOUSE
Isoform —
PDB entities 1
Chains and sequence ranges Author chain A; PDBConstruct 1–205; UniProt 34–238 Author chain F; PDBConstruct 1–205; UniProt 34–238

Proteasome subunit alpha type-2

OrganismNot specified

UniProt P49722

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 28 Proteasome subunit beta type-6 × 2 (Q60692) Proteasome subunit alpha type-7 × 2 (Q9Z2U0) Proteasome subunit alpha type-6 × 2 (Q9QUM9) Proteasome subunit beta type-2 × 2 (Q9R1P3) Proteasome subunit beta type-1 × 2 (O09061) Proteasome subunit beta type-5 × 2 (O55234) Proteasome subunit alpha type-3 × 2 (O70435) Proteasome subunit alpha type-1 × 2 (Q9R1P4) Proteasome subunit alpha type-5 × 2 (Q9Z2U1) Proteasome subunit alpha type-4 × 2 (Q9R1P0) Proteasome subunit beta type-7 × 2 (P70195) Proteasome subunit beta type-4 × 2 (P99026) Proteasome subunit beta type-3 × 2 (Q9R1P1) [(1R)-1-[(1-cyclohexyl-1,2,3-triazol-4-yl)carbonylamino]-3-methyl-butyl]boronic acid × 4 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name PSA2_MOUSE
Isoform —
PDB entities 2
Chains and sequence ranges Author chain P; PDBConstruct 1–234; UniProt 1–234 Author chain b; PDBConstruct 1–234; UniProt 1–234

Proteasome subunit alpha type-7

OrganismNot specified

UniProt Q9Z2U0

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 28 Proteasome subunit beta type-6 × 2 (Q60692) Proteasome subunit alpha type-2 × 2 (P49722) Proteasome subunit alpha type-6 × 2 (Q9QUM9) Proteasome subunit beta type-2 × 2 (Q9R1P3) Proteasome subunit beta type-1 × 2 (O09061) Proteasome subunit beta type-5 × 2 (O55234) Proteasome subunit alpha type-3 × 2 (O70435) Proteasome subunit alpha type-1 × 2 (Q9R1P4) Proteasome subunit alpha type-5 × 2 (Q9Z2U1) Proteasome subunit alpha type-4 × 2 (Q9R1P0) Proteasome subunit beta type-7 × 2 (P70195) Proteasome subunit beta type-4 × 2 (P99026) Proteasome subunit beta type-3 × 2 (Q9R1P1) [(1R)-1-[(1-cyclohexyl-1,2,3-triazol-4-yl)carbonylamino]-3-methyl-butyl]boronic acid × 4 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name PSA7_MOUSE
Isoform —
PDB entities 3
Chains and sequence ranges Author chain I; PDBConstruct 1–248; UniProt 1–248 Author chain N; PDBConstruct 1–248; UniProt 1–248

Proteasome subunit alpha type-6

OrganismNot specified

UniProt Q9QUM9

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 28 Proteasome subunit beta type-6 × 2 (Q60692) Proteasome subunit alpha type-2 × 2 (P49722) Proteasome subunit alpha type-7 × 2 (Q9Z2U0) Proteasome subunit beta type-2 × 2 (Q9R1P3) Proteasome subunit beta type-1 × 2 (O09061) Proteasome subunit beta type-5 × 2 (O55234) Proteasome subunit alpha type-3 × 2 (O70435) Proteasome subunit alpha type-1 × 2 (Q9R1P4) Proteasome subunit alpha type-5 × 2 (Q9Z2U1) Proteasome subunit alpha type-4 × 2 (Q9R1P0) Proteasome subunit beta type-7 × 2 (P70195) Proteasome subunit beta type-4 × 2 (P99026) Proteasome subunit beta type-3 × 2 (Q9R1P1) [(1R)-1-[(1-cyclohexyl-1,2,3-triazol-4-yl)carbonylamino]-3-methyl-butyl]boronic acid × 4 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name PSA6_MOUSE
Isoform —
PDB entities 4
Chains and sequence ranges Author chain K; PDBConstruct 1–246; UniProt 1–246 Author chain R; PDBConstruct 1–246; UniProt 1–246

Proteasome subunit beta type-2

OrganismNot specified

UniProt Q9R1P3

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 28 Proteasome subunit beta type-6 × 2 (Q60692) Proteasome subunit alpha type-2 × 2 (P49722) Proteasome subunit alpha type-7 × 2 (Q9Z2U0) Proteasome subunit alpha type-6 × 2 (Q9QUM9) Proteasome subunit beta type-1 × 2 (O09061) Proteasome subunit beta type-5 × 2 (O55234) Proteasome subunit alpha type-3 × 2 (O70435) Proteasome subunit alpha type-1 × 2 (Q9R1P4) Proteasome subunit alpha type-5 × 2 (Q9Z2U1) Proteasome subunit alpha type-4 × 2 (Q9R1P0) Proteasome subunit beta type-7 × 2 (P70195) Proteasome subunit beta type-4 × 2 (P99026) Proteasome subunit beta type-3 × 2 (Q9R1P1) [(1R)-1-[(1-cyclohexyl-1,2,3-triazol-4-yl)carbonylamino]-3-methyl-butyl]boronic acid × 4 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name PSB2_MOUSE
Isoform —
PDB entities 5
Chains and sequence ranges Author chain T; PDBConstruct 1–201; UniProt 1–201 Author chain V; PDBConstruct 1–201; UniProt 1–201

Proteasome subunit beta type-1

OrganismNot specified

UniProt O09061

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 28 Proteasome subunit beta type-6 × 2 (Q60692) Proteasome subunit alpha type-2 × 2 (P49722) Proteasome subunit alpha type-7 × 2 (Q9Z2U0) Proteasome subunit alpha type-6 × 2 (Q9QUM9) Proteasome subunit beta type-2 × 2 (Q9R1P3) Proteasome subunit beta type-5 × 2 (O55234) Proteasome subunit alpha type-3 × 2 (O70435) Proteasome subunit alpha type-1 × 2 (Q9R1P4) Proteasome subunit alpha type-5 × 2 (Q9Z2U1) Proteasome subunit alpha type-4 × 2 (Q9R1P0) Proteasome subunit beta type-7 × 2 (P70195) Proteasome subunit beta type-4 × 2 (P99026) Proteasome subunit beta type-3 × 2 (Q9R1P1) [(1R)-1-[(1-cyclohexyl-1,2,3-triazol-4-yl)carbonylamino]-3-methyl-butyl]boronic acid × 4 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name PSB1_MOUSE
Isoform —
PDB entities 6
Chains and sequence ranges Author chain S; PDBConstruct 1–240; UniProt 1–240 Author chain X; PDBConstruct 1–240; UniProt 1–240

Proteasome subunit beta type-5

OrganismNot specified

UniProt O55234

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 28 Proteasome subunit beta type-6 × 2 (Q60692) Proteasome subunit alpha type-2 × 2 (P49722) Proteasome subunit alpha type-7 × 2 (Q9Z2U0) Proteasome subunit alpha type-6 × 2 (Q9QUM9) Proteasome subunit beta type-2 × 2 (Q9R1P3) Proteasome subunit beta type-1 × 2 (O09061) Proteasome subunit alpha type-3 × 2 (O70435) Proteasome subunit alpha type-1 × 2 (Q9R1P4) Proteasome subunit alpha type-5 × 2 (Q9Z2U1) Proteasome subunit alpha type-4 × 2 (Q9R1P0) Proteasome subunit beta type-7 × 2 (P70195) Proteasome subunit beta type-4 × 2 (P99026) Proteasome subunit beta type-3 × 2 (Q9R1P1) [(1R)-1-[(1-cyclohexyl-1,2,3-triazol-4-yl)carbonylamino]-3-methyl-butyl]boronic acid × 4 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name PSB5_MOUSE
Isoform —
PDB entities 7
Chains and sequence ranges Author chain C; PDBConstruct 1–205; UniProt 60–264 Author chain D; PDBConstruct 1–205; UniProt 60–264

Proteasome subunit alpha type-3

OrganismNot specified

UniProt O70435

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 28 Proteasome subunit beta type-6 × 2 (Q60692) Proteasome subunit alpha type-2 × 2 (P49722) Proteasome subunit alpha type-7 × 2 (Q9Z2U0) Proteasome subunit alpha type-6 × 2 (Q9QUM9) Proteasome subunit beta type-2 × 2 (Q9R1P3) Proteasome subunit beta type-1 × 2 (O09061) Proteasome subunit beta type-5 × 2 (O55234) Proteasome subunit alpha type-1 × 2 (Q9R1P4) Proteasome subunit alpha type-5 × 2 (Q9Z2U1) Proteasome subunit alpha type-4 × 2 (Q9R1P0) Proteasome subunit beta type-7 × 2 (P70195) Proteasome subunit beta type-4 × 2 (P99026) Proteasome subunit beta type-3 × 2 (Q9R1P1) [(1R)-1-[(1-cyclohexyl-1,2,3-triazol-4-yl)carbonylamino]-3-methyl-butyl]boronic acid × 4 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name PSA3_MOUSE
Isoform —
PDB entities 8
Chains and sequence ranges Author chain J; PDBConstruct 1–255; UniProt 1–255 Author chain Q; PDBConstruct 1–255; UniProt 1–255

Proteasome subunit alpha type-1

OrganismNot specified

UniProt Q9R1P4

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 28 Proteasome subunit beta type-6 × 2 (Q60692) Proteasome subunit alpha type-2 × 2 (P49722) Proteasome subunit alpha type-7 × 2 (Q9Z2U0) Proteasome subunit alpha type-6 × 2 (Q9QUM9) Proteasome subunit beta type-2 × 2 (Q9R1P3) Proteasome subunit beta type-1 × 2 (O09061) Proteasome subunit beta type-5 × 2 (O55234) Proteasome subunit alpha type-3 × 2 (O70435) Proteasome subunit alpha type-5 × 2 (Q9Z2U1) Proteasome subunit alpha type-4 × 2 (Q9R1P0) Proteasome subunit beta type-7 × 2 (P70195) Proteasome subunit beta type-4 × 2 (P99026) Proteasome subunit beta type-3 × 2 (Q9R1P1) [(1R)-1-[(1-cyclohexyl-1,2,3-triazol-4-yl)carbonylamino]-3-methyl-butyl]boronic acid × 4 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name PSA1_MOUSE
Isoform —
PDB entities 9
Chains and sequence ranges Author chain G; PDBConstruct 1–263; UniProt 1–263 Author chain L; PDBConstruct 1–263; UniProt 1–263

Proteasome subunit alpha type-5

OrganismNot specified

UniProt Q9Z2U1

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 28 Proteasome subunit beta type-6 × 2 (Q60692) Proteasome subunit alpha type-2 × 2 (P49722) Proteasome subunit alpha type-7 × 2 (Q9Z2U0) Proteasome subunit alpha type-6 × 2 (Q9QUM9) Proteasome subunit beta type-2 × 2 (Q9R1P3) Proteasome subunit beta type-1 × 2 (O09061) Proteasome subunit beta type-5 × 2 (O55234) Proteasome subunit alpha type-3 × 2 (O70435) Proteasome subunit alpha type-1 × 2 (Q9R1P4) Proteasome subunit alpha type-4 × 2 (Q9R1P0) Proteasome subunit beta type-7 × 2 (P70195) Proteasome subunit beta type-4 × 2 (P99026) Proteasome subunit beta type-3 × 2 (Q9R1P1) [(1R)-1-[(1-cyclohexyl-1,2,3-triazol-4-yl)carbonylamino]-3-methyl-butyl]boronic acid × 4 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name PSA5_MOUSE
Isoform —
PDB entities 10
Chains and sequence ranges Author chain H; PDBConstruct 1–241; UniProt 1–241 Author chain M; PDBConstruct 1–241; UniProt 1–241

Proteasome subunit alpha type-4

OrganismNot specified

UniProt Q9R1P0

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 28 Proteasome subunit beta type-6 × 2 (Q60692) Proteasome subunit alpha type-2 × 2 (P49722) Proteasome subunit alpha type-7 × 2 (Q9Z2U0) Proteasome subunit alpha type-6 × 2 (Q9QUM9) Proteasome subunit beta type-2 × 2 (Q9R1P3) Proteasome subunit beta type-1 × 2 (O09061) Proteasome subunit beta type-5 × 2 (O55234) Proteasome subunit alpha type-3 × 2 (O70435) Proteasome subunit alpha type-1 × 2 (Q9R1P4) Proteasome subunit alpha type-5 × 2 (Q9Z2U1) Proteasome subunit beta type-7 × 2 (P70195) Proteasome subunit beta type-4 × 2 (P99026) Proteasome subunit beta type-3 × 2 (Q9R1P1) [(1R)-1-[(1-cyclohexyl-1,2,3-triazol-4-yl)carbonylamino]-3-methyl-butyl]boronic acid × 4 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name PSA4_MOUSE
Isoform —
PDB entities 11
Chains and sequence ranges Author chain O; PDBConstruct 1–261; UniProt 1–261 Author chain Z; PDBConstruct 1–261; UniProt 1–261

Proteasome subunit beta type-7

OrganismNot specified

UniProt P70195

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 28 Proteasome subunit beta type-6 × 2 (Q60692) Proteasome subunit alpha type-2 × 2 (P49722) Proteasome subunit alpha type-7 × 2 (Q9Z2U0) Proteasome subunit alpha type-6 × 2 (Q9QUM9) Proteasome subunit beta type-2 × 2 (Q9R1P3) Proteasome subunit beta type-1 × 2 (O09061) Proteasome subunit beta type-5 × 2 (O55234) Proteasome subunit alpha type-3 × 2 (O70435) Proteasome subunit alpha type-1 × 2 (Q9R1P4) Proteasome subunit alpha type-5 × 2 (Q9Z2U1) Proteasome subunit alpha type-4 × 2 (Q9R1P0) Proteasome subunit beta type-4 × 2 (P99026) Proteasome subunit beta type-3 × 2 (Q9R1P1) [(1R)-1-[(1-cyclohexyl-1,2,3-triazol-4-yl)carbonylamino]-3-methyl-butyl]boronic acid × 4 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name PSB7_MOUSE
Isoform —
PDB entities 12
Chains and sequence ranges Author chain B; PDBConstruct 1–234; UniProt 44–277 Author chain E; PDBConstruct 1–234; UniProt 44–277

Proteasome subunit beta type-4

OrganismNot specified

UniProt P99026

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 28 Proteasome subunit beta type-6 × 2 (Q60692) Proteasome subunit alpha type-2 × 2 (P49722) Proteasome subunit alpha type-7 × 2 (Q9Z2U0) Proteasome subunit alpha type-6 × 2 (Q9QUM9) Proteasome subunit beta type-2 × 2 (Q9R1P3) Proteasome subunit beta type-1 × 2 (O09061) Proteasome subunit beta type-5 × 2 (O55234) Proteasome subunit alpha type-3 × 2 (O70435) Proteasome subunit alpha type-1 × 2 (Q9R1P4) Proteasome subunit alpha type-5 × 2 (Q9Z2U1) Proteasome subunit alpha type-4 × 2 (Q9R1P0) Proteasome subunit beta type-7 × 2 (P70195) Proteasome subunit beta type-3 × 2 (Q9R1P1) [(1R)-1-[(1-cyclohexyl-1,2,3-triazol-4-yl)carbonylamino]-3-methyl-butyl]boronic acid × 4 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name PSB4_MOUSE
Isoform —
PDB entities 13
Chains and sequence ranges Author chain W; PDBConstruct 1–264; UniProt 1–264 Author chain a; PDBConstruct 1–264; UniProt 1–264

Proteasome subunit beta type-3

OrganismNot specified

UniProt Q9R1P1

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 28 Proteasome subunit beta type-6 × 2 (Q60692) Proteasome subunit alpha type-2 × 2 (P49722) Proteasome subunit alpha type-7 × 2 (Q9Z2U0) Proteasome subunit alpha type-6 × 2 (Q9QUM9) Proteasome subunit beta type-2 × 2 (Q9R1P3) Proteasome subunit beta type-1 × 2 (O09061) Proteasome subunit beta type-5 × 2 (O55234) Proteasome subunit alpha type-3 × 2 (O70435) Proteasome subunit alpha type-1 × 2 (Q9R1P4) Proteasome subunit alpha type-5 × 2 (Q9Z2U1) Proteasome subunit alpha type-4 × 2 (Q9R1P0) Proteasome subunit beta type-7 × 2 (P70195) Proteasome subunit beta type-4 × 2 (P99026) [(1R)-1-[(1-cyclohexyl-1,2,3-triazol-4-yl)carbonylamino]-3-methyl-butyl]boronic acid × 4 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name PSB3_MOUSE
Isoform —
PDB entities 14
Chains and sequence ranges Author chain U; PDBConstruct 1–205; UniProt 1–205 Author chain Y; PDBConstruct 1–205; UniProt 1–205

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

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2. Structure Basics 2. Structure Basics

Entry ID entry_id8ypk
Deposition date deposition_date2024-03-17
Structure title titlemouse proteasome 20S subunit in complex with compound 1
Keywords keywordsInhibitor, complex, Proteasome, HYDROLASE; HYDROLASE
Experimental Method methodELECTRON MICROSCOPY
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3. Official assembly/model SAXS Official SAXS Profiles

This page reads only the latest assembly calculations. Every curve maps to an explicit PDB entry, official biological assembly and coordinate model.

8ypk__assembly_1__model_1

Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

Download this curve (.dat)

8ypk__assembly_1__model_1 | I(q)

10-2 10-1 106 107 108 109 q (1/Angstrom) I(q)
100 plotted points; both axes use logarithmic scales.

8ypk__assembly_1__model_1 | P(r) · Pending

The new assembly/model P(r) has not been calculated yet This placeholder does not display legacy data r (Angstrom) P(r)
P(r) will be calculated and displayed separately for the same assembly/model.
Rg(Guinier)59.95 Å
Rg (electron density)59.59 Å
Total Rg59.78 Å
Atom count47992
Residues6164
Excluded volume856580 ų
Maximum q0.500 Å⁻¹
Assembly Model Structure unit Oligomeric description Status CRYSOL Actions
1 1 8ypk__assembly_1__model_1 28-meric (28) Success 4.1.3-1-20251215 (887e7ef) View Download
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4. Crystallography and Experiment 4. Crystallography & Experiment

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5. Entities and Polymers Entities & Polymers (15)

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7. Citations (1)