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9bc5

AAV-2 Rep68-AAVS1 heptameric complex

Method: ELECTRON MICROSCOPY
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1. Protein Identity and Related Structures Protein Identity & Related Structures

Protein Rep68

adeno-associated virus 2

UniProt P03132

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–DNA Homooligomer Protein 7 DNA 2 AAVS1 DNA (41-MER) Sense strand × 1 AAVS1 DNA (41-MER) ANTISENSE × 1 Consistent with all polymers

Other States of the Same Protein in the Database

Monomer
1u0j 4zo0 4zo0 4zo0 5dcx 5dcx 5dcx 5dcx 5dcx 5dcx 5dcx 5dcx

15 assemblies; showing the first 12

Homodimer

None

Homotetramer

None

Other homooligomers

None

Heteromeric or nucleic-acid complex
4zq9 6xb8 6xb8 7jse 7jsf 7jsg 7jsh 7jsi 9bc5 9bu7 9rwg

11 assemblies

View Construct and Data Evidence
UniProt name REP68_AAV2S
Isoform —
PDB entities 1
Chains and sequence ranges Author chain A； PDBConstruct 3–491； UniProt 2–490 Author chain B； PDBConstruct 3–491； UniProt 2–490 Author chain C； PDBConstruct 3–491； UniProt 2–490 Author chain D； PDBConstruct 3–491； UniProt 2–490 Author chain E； PDBConstruct 3–491； UniProt 2–490 Author chain F； PDBConstruct 3–491； UniProt 2–490 Author chain G； PDBConstruct 3–491； UniProt 2–490

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

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2. Structure Basics 2. Structure Basics

Entry ID entry_id9bc5
Deposition date deposition_date2024-04-07
Last revision last_revision2025-02-12
Structure title titleAAV-2 Rep68-AAVS1 heptameric complex
Keywords keywords;Adeno-associated virus, non-structural protein, AAVS1 integration site, Protein-DNA complex, VIRAL PROTEIN, VIRAL PROTEIN-DNA complex ;; VIRAL PROTEIN/DNA
Experimental Method methodELECTRON MICROSCOPY
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3. Official assembly/model SAXS Official SAXS Profiles

This page reads only the latest assembly calculations. Every curve maps to an explicit PDB entry, official biological assembly and coordinate model.

9bc5__assembly_1__model_1

Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

Download this curve (.dat)

9bc5__assembly_1__model_1 | I(q)

10-2 10-1 106 107 108 109 q (1/Angstrom) I(q)
100 plotted points; both axes use logarithmic scales.

9bc5__assembly_1__model_1 | P(r) · Pending

The new assembly/model P(r) has not been calculated yet This placeholder does not display legacy data r (Angstrom) P(r)
P(r) will be calculated and displayed separately for the same assembly/model.
Rg（Guinier）53.22 Å
Rg (electron density)53.31 Å
Total Rg53.24 Å
Atom count26793
Residues3208
Excluded volume471920 ų
Maximum q0.500 Å⁻¹
Assembly Model Structure unit Oligomeric description Status CRYSOL Actions
1 1 9bc5__assembly_1__model_1 nonameric （9） Success 4.1.3-1-20251215 (887e7ef) View Download
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4. Crystallography and Experiment 4. Crystallography & Experiment

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5. Entities and Polymers Entities & Polymers (3)

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7. Citations (1)