SAXSdb — 9rwg

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1. Structure Basics

entry_id	9rwg
deposition_date	2025-07-09
title	Pentameric AAV2 Rep40 in complex with AAV8
keywords	Adeno-associated virus, AAV, AAA+ ATPase, VIRUS; VIRUS
method	ELECTRON MICROSCOPY

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Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

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2. SAXS Parameters (CRYSOL)

rg_guinier	53.18 Å
rg_electron	52.12 Å
i0	4150000000.00
molecular_weight	523840.0 kDa
excluded_volume	646880 Å³
envelope_volume	874050 Å³
shell_volume	130340 Å³
envelope_diameter	166.2 Å
shell_rg	61.46 Å
envelope_rg	51.72 Å
shape_rg	52.12 Å
total_rg	52.36 Å
total_atoms	36961
n_residues	4581
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

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3. P(r) Analysis (GNOM)

dmax	162.4 Å
rg_real	52.92 Å
rg_real_error	0.98 Å
i0_real	4.1500e+09
i0_real_error	7.6720e+07
rg_reciprocal	53.38 Å
i0_reciprocal	4153000000.0000
total_estimate	0.8811
solution_quality	GOOD a GOOD solution
n_peaks	1
r_peak_primary	70.4 Å
skewness	0.101
kurtosis	-0.557
angular_range	— – 0.1500 Å⁻¹
current_alpha	0.0000
highest_alpha	492300000.0000
n_real_points	31
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.947; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.965; Smooth: 0.645

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4. Crystallography & Experiment

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5. Entities & Polymer Info (4)

Entity 1 polymer

description	Capsid protein
formula_weight	81833.0 kDa
src_method	man
entity_count	15

Polymer

type	polypeptide(L)
strand_id	A,B,E,F,G,H,I,Q,R,S,U,V,W,X,Y
atom_count	36961

MAADGYLPDWLEDNLSEGIREWWALKPGAPKPKANQQKQDDGRGLVLPGYKYLGPFNGLDKGEPVNAADAAALEHDKAYDQQLQAGDNPYLRYNHADAEFQERLQEDTSFGGNLGRAVFQAKKRVLEPLGLVEEGAKTAPGKKRPVEPSPQRSPDSSTGIGKKGQQPARKRLNFGQTGDSESVPDPQPLGEPPAAPSGVGPNTMAAGGGAPMADNNEGADGVGSSSGNWHCDSTWLGDRVITTSTRTWALPTYNNHLYKQISNGTSGGATNDNTYFGYSTPWGYFDFNRFHCHFSPRDWQRLINNNWGFRPKRLSFKLFNIQVKEVTQNEGTKTIANNLTSTIQVFTDSEYQLPYVLGSAHQGCLPPFPADVFMIPQYGYLTLNNGSQAVGRSSFYCLEYFPSQMLRTGNNFQFTYTFEDVPFHSSYAHSQSLDRLMNPLIDQYLYYLSRTQTTGGTANTQTLGFSQGGPNTMANQAKNWLPGPCYRQQRVSTTTGQNNNSNFAWTAGTKYHLNGRNSLANPGIAMATHKDDEERFFPSNGILIFGKQNAARDNADYSDVMLTSEEEIKTTNPVATEEYGIVADNLQQQNTAPQIGTVNSQGALPGMVWQNRDVYLQGPIWAKIPHTDGNFHPSPLMGGFGLKHPPPQILIKNTPVPADPPTTFNQSKLNSFITQYSTGQVSVEIEWELQKENSKRWNPEIQYTSNYYKSTSVDFAVNTEGVYSEPRPIGTRYLTRNL

Source

organism	adeno-associated virus 8
ncbi_taxonomy_id	202813
host_organism	Homo sapiens

Entity 2 polymer

description	Protein Rep68
formula_weight	44148.9 kDa
ec_number	3.6.4.12
src_method	man
entity_count	5

Polymer

type	polypeptide(L)
strand_id	a,b,c,d,e

EQNKENQNPNSDAPVIRSKTSARYMELVGWLVDKGITSEKQWIQEDQASYISFNAASNSRSQIKAALDNAGKIMSLTKTAPDYLVGQQPVEDISSNRIYKILELNGYDPQYAASVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHTVPFYGCVNWTNENFPFNDCVDKMVIWWEEGKMTAKVVESAKAILGGSKVRVDQKCKSSAQIDPTPVIVTSNTNMCAVIDGNSTTFEHQQPLQDRMFKFELTRRLDHDFGKVTKQEVKDFFRWAKDHVVEVEHEFYVKKGGAKKRPAPSDADISEPKRVRESVAQPSTSDAEASINYADRLARGHSLGSLVPRGSGGGGSGGGGSGGGGSMDYKDHDGDYKDHDIDYKDDDDKGSENLYFQSHHHHHH

Source

organism	adeno-associated virus 8
ncbi_taxonomy_id	202813
host_organism	Escherichia coli

Entity 3 non-polymer

description	ADENOSINE-5'-DIPHOSPHATE
formula_weight	427.2 kDa
src_method	syn
entity_count	12

Entity 4 non-polymer

description	MAGNESIUM ION
formula_weight	24.3 kDa
src_method	syn
entity_count	10

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6. Citations (1)

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length_a	1.000 Å
length_b	1.000 Å
length_c	1.000 Å
angle_alpha	90.00 °
angle_beta	90.00 °
angle_gamma	90.00 °
z_pdb	—

space_group	P 1
int_tables_number	1
crystal_system	—

resolution	2.19 Å
resolution_method	—
num_particles	191887

fit	/app/data/saxs_computation/rw/9rwg/9rwg.fit
pddf	/app/data/pr_computation/rw/9rwg/9rwg.pr.out
profile	/app/data/saxs_computation/rw/9rwg/9rwg.dat

Pentameric AAV2 Rep40 in complex with AAV8

SAXS Profile

P(r) Distribution

1. Structure Basics

Download Data

2. SAXS Parameters (CRYSOL)

3. P(r) Analysis (GNOM)

4. Crystallography & Experiment

Unit Cell

Symmetry

EM 3D

5. Entities & Polymer Info (4)

Entity 1 polymer

Polymer

Source

Entity 2 polymer

Polymer

Source

Entity 3 non-polymer

Entity 4 non-polymer

6. Citations (1)

7. Files & Curves (10)

Files (7)

Curves (3)