SAXSdb — 9bgm

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1. Protein Identity and Related Structures Protein Identity & Related Structures

gp75 tail tube

OrganismNot specified

State in the Current Structure

Assembly	Physical composition	Protein state	Molecular copy count	Associated components	Data consistency
1	Protein heterocomplex	Heteromer	Protein 36	gp83 head-to-tail × 12 （A0A2K8I0C0） gp80 portal protein × 12 （A0A2K8IC08）	Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence

UniProt name	A0A2K8I3N9_9CAUD
Isoform	—
PDB entities	1
Chains and sequence ranges	Author chain A； PDBConstruct 1–321； UniProt 1–321 Author chain D； PDBConstruct 1–321； UniProt 1–321 Author chain G； PDBConstruct 1–321； UniProt 1–321 Author chain J； PDBConstruct 1–321； UniProt 1–321 Author chain M； PDBConstruct 1–321； UniProt 1–321 Author chain P； PDBConstruct 1–321； UniProt 1–321 Author chain S； PDBConstruct 1–321； UniProt 1–321 Author chain W； PDBConstruct 1–321； UniProt 1–321 Author chain Z； PDBConstruct 1–321； UniProt 1–321 Author chain a； PDBConstruct 1–321； UniProt 1–321 Author chain f； PDBConstruct 1–321； UniProt 1–321 Author chain i； PDBConstruct 1–321； UniProt 1–321

gp83 head-to-tail

OrganismNot specified

UniProt A0A2K8I0C0

State in the Current Structure

Assembly	Physical composition	Protein state	Molecular copy count	Associated components	Data consistency
1	Protein heterocomplex	Heteromer	Protein 36	gp75 tail tube × 12 （A0A2K8I3N9） gp80 portal protein × 12 （A0A2K8IC08）	Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence

UniProt name	A0A2K8I0C0_9CAUD
Isoform	—
PDB entities	2
Chains and sequence ranges	Author chain B； PDBConstruct 1–244； UniProt 1–244 Author chain E； PDBConstruct 1–244； UniProt 1–244 Author chain H； PDBConstruct 1–244； UniProt 1–244 Author chain K； PDBConstruct 1–244； UniProt 1–244 Author chain N； PDBConstruct 1–244； UniProt 1–244 Author chain Q； PDBConstruct 1–244； UniProt 1–244 Author chain T； PDBConstruct 1–244； UniProt 1–244 Author chain X； PDBConstruct 1–244； UniProt 1–244 Author chain b； PDBConstruct 1–244； UniProt 1–244 Author chain d； PDBConstruct 1–244； UniProt 1–244 Author chain g； PDBConstruct 1–244； UniProt 1–244 Author chain j； PDBConstruct 1–244； UniProt 1–244

gp80 portal protein

OrganismNot specified

UniProt A0A2K8IC08

State in the Current Structure

Assembly	Physical composition	Protein state	Molecular copy count	Associated components	Data consistency
1	Protein heterocomplex	Heteromer	Protein 36	gp75 tail tube × 12 （A0A2K8I3N9） gp83 head-to-tail × 12 （A0A2K8I0C0）	Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence

UniProt name	A0A2K8IC08_9CAUD
Isoform	—
PDB entities	3
Chains and sequence ranges	Author chain C； PDBConstruct 1–726； UniProt 1–726 Author chain F； PDBConstruct 1–726； UniProt 1–726 Author chain I； PDBConstruct 1–726； UniProt 1–726 Author chain L； PDBConstruct 1–726； UniProt 1–726 Author chain O； PDBConstruct 1–726； UniProt 1–726 Author chain R； PDBConstruct 1–726； UniProt 1–726 Author chain V； PDBConstruct 1–726； UniProt 1–726 Author chain Y； PDBConstruct 1–726； UniProt 1–726 Author chain c； PDBConstruct 1–726； UniProt 1–726 Author chain e； PDBConstruct 1–726； UniProt 1–726 Author chain h； PDBConstruct 1–726； UniProt 1–726 Author chain k； PDBConstruct 1–726； UniProt 1–726

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

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2. Structure Basics 2. Structure Basics

Entry ID entry_id	9bgm
Deposition date deposition_date	2024-04-19
Structure title title	Pseudomonas phage DEV neck and tail (portal, head-to-tail and tail tube proteins)
Keywords keywords	portal, tail hub, tail tube, complex, STRUCTURAL PROTEIN, gp75, gp83, gp80, VIRAL PROTEIN; VIRAL PROTEIN
Experimental Method method	ELECTRON MICROSCOPY

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3. Official assembly/model SAXS Official SAXS Profiles

This page reads only the latest assembly calculations. Every curve maps to an explicit PDB entry, official biological assembly and coordinate model.

9bgm__assembly_1__model_1

Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

Download this curve (.dat)

9bgm__assembly_1__model_1 | I(q)

100 plotted points; both axes use logarithmic scales.

9bgm__assembly_1__model_1 | P(r) · Pending

P(r) will be calculated and displayed separately for the same assembly/model.

Rg（Guinier）	91.60 Å
Rg (electron density)	92.21 Å
Total Rg	92.07 Å
Atom count	102504
Residues	13212
Excluded volume	1813500 Å³
Maximum q	0.500 Å⁻¹

Assembly	Model	Structure unit	Oligomeric description	Status	CRYSOL	Actions
1	1	`9bgm__assembly_1__model_1`	36-meric （36）	Success	4.1.3-1-20251215 (887e7ef)	View Download

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4. Crystallography and Experiment 4. Crystallography & Experiment

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5. Entities and Polymers Entities & Polymers (3)

Entity 1 Entity 1 polymer

Description description	gp75 tail tube
Molecular weight formula_weight	35267.2 kDa
Source method src_method	nat
Copy count entity_count	12

Polymer Polymer

Polymer type type	polypeptide(L)
Chain IDs strand_id	a,A,D,G,J,M,P,S,W,Z,f,i
Atom count atom_count	102552

MAVEPITIADLTEVKLDGKGALDQLLQVTRLHLAKEHDAGRLKGQEYAAVLTGGITAVLQNAVMFLLQKDEAANKAALVEAQIKLTEKQGELLDKQIAQADKDAELIAAKVKLTLEQAKLPDSQIRSAGFQDLLVQEQTKVQTAQTRRIDQEILSAGFQDLLVKEQTAKTKQDVLTAVQQTKVMEQQVLESTQKVLNMKQELLNLVAQECLLKAQFDLTKDQGLNTQEQTILVRQKVASERAQTIGAGVDADSVIGRQKELYKAQADGFKRDAEQKAAKILIDTWNVRRTTDTGTQANTTNRLDDANVGRVVNMLMTGVGA

Entity 2 Entity 2 polymer

Description description	gp83 head-to-tail
Molecular weight formula_weight	27868.9 kDa
Source method src_method	nat
Copy count entity_count	12

Polymer Polymer

Polymer type type	polypeptide(L)
Chain IDs strand_id	b,B,E,H,K,N,Q,T,X,d,g,j

MTIQLKQVIDLLAEGELSNIKYVNIDTGALVLERVPSLIRAINLGVLDLHKRFLLKEGMLKIQLEEGRRLYPLRPAYQVGQKPKPGVPQFITEGNKLGRQSILKIEKIIGDNGVEYYLNDTWQPLNITTPEFDVLEISDEFYCHSSSKTLEVRYRRAPTPMKICVDNLDSWGCIDIDLPYTHLQALLYFVASRCQTPIGFMENTAQEGFNFSQKYEAECANLDAQNLRIDPVGNQDRFTRGGWV

Entity 3 Entity 3 polymer

Description description	gp80 portal protein
Molecular weight formula_weight	81739.5 kDa
Source method src_method	nat
Copy count entity_count	12

Polymer Polymer

Polymer type type	polypeptide(L)
Chain IDs strand_id	c,C,F,I,L,O,R,V,Y,e,h,k

MADVDEDYLTLPNEDGDPSKRLQPEWSNAPSLAQLKQDYQEAKQVTDEKITQINRWLDYMHVRGEGKPKTEKGKSAVQPPTIRKQAEWRYSSLSEPFLSSPNIFEVNPVTWEDAESARQNGLVLNQQFNTKLNKQRFIDEYVRAGVDEGTIIVKVGWNYQSRTVKEQVVTYEMMPDSSEELAQIYQTAAQIREESPSEYPEIPEDVRLGLEETEANGIQVRAVPVGSEEEEREETVENHPTVQVCDYNNIVIDPSCGSDFSKAKFLIETFESSYAELKADGRYKNLDKIQVEGQNLLSEPDYTGPSEGVRNFDFQDKSRKRLVVHEYWGYYDIHGDGVLHPIVATWVGAVMIRMEENPFPDKKIPYVVVSYIPRKRDLYGESDGALLIDNQRIIGAVTRGMIDTMARSANGQVGVMKGALDVTNRRRFDRGENYEFNPGADPRAAVHMHTFPEIPQSAQYMINLQQAEAESMTGVKAFNAGISGAALGDTATAVRGALDAASKRELGILRRLSAGIIEIGRKIIAMNAEFLDDVEVVRITNEHFVDIRRDDLAGNFDLKLDISTAEEDNAKVNDLTFMLQTMGPNMDPMMAQQIMGQIMELKKMPDFAKRIREFQPQPDPIAQQKAQLELMLLQAQIEAERARAAHYMSGAGLQDSKVGTEQAKARALASQADMTDLNFLEQESGVQQARKRELQQAQSEAQGKLAMLNSQLKRLDEATSARTSQK

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Unit-cell length a length_a	1.000 Å
Unit-cell length b length_b	1.000 Å
Unit-cell length c length_c	1.000 Å
Unit-cell angle α angle_alpha	90.00 °
Unit-cell angle β angle_beta	90.00 °
Unit-cell angle γ angle_gamma	90.00 °
Molecules per unit cell Z z_pdb	—

Space group space_group	P 1
Space-group number int_tables_number	1
Crystal system crystal_system	—

Resolution resolution	3.10 Å
Resolution测定Method resolution_method	—
颗粒数 num_particles	3228

Pseudomonas phage DEV neck and tail (portal, head-to-tail and tail tube proteins)

1. Protein Identity and Related Structures Protein Identity & Related Structures

gp75 tail tube

State in the Current Structure

Other States of the Same Protein in the Database

gp83 head-to-tail

State in the Current Structure

Other States of the Same Protein in the Database

gp80 portal protein

State in the Current Structure

Other States of the Same Protein in the Database

2. Structure Basics 2. Structure Basics

3. Official assembly/model SAXS Official SAXS Profiles

9bgm__assembly_1__model_1

9bgm__assembly_1__model_1 | I(q)

9bgm__assembly_1__model_1 | P(r) · Pending

4. Crystallography and Experiment 4. Crystallography & Experiment

Unit cell Unit Cell

Symmetry Symmetry

冷冻电镜 EM 3D

5. Entities and Polymers Entities & Polymers (3)

Entity 1 Entity 1 polymer

Polymer Polymer

Entity 2 Entity 2 polymer

Polymer Polymer

Entity 3 Entity 3 polymer

Polymer Polymer

7. Citations (1)

Pseudomonas phage DEV neck and tail (portal, head-to-tail and tail tube proteins)

1. Protein Identity and Related Structures Protein Identity & Related Structures

gp75 tail tube

State in the Current Structure

Other States of the Same Protein in the Database

Monomer

Homodimer

Homotetramer

Other homooligomers

Heteromeric or nucleic-acid complex

gp83 head-to-tail

State in the Current Structure

Other States of the Same Protein in the Database

Monomer

Homodimer

Homotetramer

Other homooligomers

Heteromeric or nucleic-acid complex

gp80 portal protein

State in the Current Structure

Other States of the Same Protein in the Database

Monomer

Homodimer

Homotetramer

Other homooligomers

Heteromeric or nucleic-acid complex

2. Structure Basics 2. Structure Basics

3. Official assembly/model SAXS Official SAXS Profiles

9bgm__assembly_1__model_1

9bgm__assembly_1__model_1 | I(q)

9bgm__assembly_1__model_1 | P(r) · Pending

4. Crystallography and Experiment 4. Crystallography & Experiment

Unit cell Unit Cell

Symmetry Symmetry

冷冻电镜 EM 3D

5. Entities and Polymers Entities & Polymers (3)

Entity 1 Entity 1 polymer

Polymer Polymer

Entity 2 Entity 2 polymer

Polymer Polymer

Entity 3 Entity 3 polymer

Polymer Polymer

7. Citations (1)