SAXSdb — 9ze4

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1. Structure Basics

entry_id	9ze4
deposition_date	2025-11-27
title	Asymmetric Tail Gating Complex of Pseudomonas Phage DEV
keywords	virus, bacteriophage, receptor-binding protein, VIRAL PROTEIN; VIRAL PROTEIN
method	ELECTRON MICROSCOPY

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Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

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2. SAXS Parameters (CRYSOL)

rg_guinier	— Å
rg_electron	119.30 Å
i0	3815300000.00
molecular_weight	509720.0 kDa
excluded_volume	633890 Å³
envelope_volume	1145300 Å³
shell_volume	106920 Å³
envelope_diameter	428.9 Å
shell_rg	61.55 Å
envelope_rg	117.10 Å
shape_rg	119.40 Å
total_rg	118.20 Å
total_atoms	35853
n_residues	4951
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

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3. P(r) Analysis (GNOM)

dmax	305.7 Å
rg_real	105.80 Å
rg_real_error	2.37 Å
i0_real	3.6540e+09
i0_real_error	8.6090e+07
rg_reciprocal	92.24 Å
i0_reciprocal	3560000000.0000
total_estimate	0.8330
solution_quality	GOOD a GOOD solution
n_peaks	1
r_peak_primary	70.5 Å
skewness	0.456
kurtosis	-0.940
angular_range	— – 0.0650 Å⁻¹
current_alpha	0.1404
highest_alpha	80630000.0000
n_real_points	14
gnom_version	4.1.3
quality_criteria	AN1: 0.015; Oscil: 0.564; Stabil: 0.958; Sysdev: 1.000; Positv: 1.000; Valcen: 0.838; Smooth: 0.430

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4. Crystallography & Experiment

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5. Entities & Polymer Info (3)

Entity 1 polymer

description	gp75 tail tube
formula_weight	35267.2 kDa
src_method	nat
entity_count	12

Polymer

type	polypeptide(L)
strand_id	A,B,C,D,E,F,G,H,I,J,K,L
atom_count	35853

MAVEPITIADLTEVKLDGKGALDQLLQVTRLHLAKEHDAGRLKGQEYAAVLTGGITAVLQNAVMFLLQKDEAANKAALVEAQIKLTEKQGELLDKQIAQADKDAELIAAKVKLTLEQAKLPDSQIRSAGFQDLLVQEQTKVQTAQTRRIDQEILSAGFQDLLVKEQTAKTKQDVLTAVQQTKVMEQQVLESTQKVLNMKQELLNLVAQECLLKAQFDLTKDQGLNTQEQTILVRQKVASERAQTIGAGVDADSVIGRQKELYKAQADGFKRDAEQKAAKILIDTWNVRRTTDTGTQANTTNRLDDANVGRVVNMLMTGVGA

Entity 2 polymer

description	N4 gp53-like protein
formula_weight	82267.0 kDa
src_method	nat
entity_count	1

Polymer

type	polypeptide(L)
strand_id	M

MGLFSSKKKTVVNTTVQRVFDDAHIPDSPRTGVIQGITHETGIVENILEKLSDSIGVRANTAYLWAQRNNYYWGLPESKVVNGVDARTVVVQTIARSEGTITTYYNQFGPLNSLHWGFTELVRLYQYNPLTNELPGLSTTKGSKVYLFDMIPVFQTDTVAWADETANKGMLQDFGFSPKSGYTPSRPYNTIGGMGQFAGWSPYRTDNSFGEDYVLLTYEWKDAQGVIKQETIRMIMNLDLSLDYHQVRFRRQNGTQGFFTYQDGKGTYPLIDGVFNLDYTKQGTYYPWMYCRFNKMNVKDIPGNAYKDVKEVAKISGIGIDELIDGVHADPDIGDVAQVVLFYGVPPGATNQDQLTYIFEYLLLLHSEALAQIQKAENLQGKLGDYSNTADQMITMRDKYFKMDFSFSGITVNRKSGKVGPIGFINVKSGMADKSSGQIKTQQPAYTYTRQAMDSMYDEVIIYNPAMHYQITSKKGHVAQLGQPELLIPVDRVVLSQLGLRAQEQLLCRSLHMAINTQVQIKTPWYASGFFKVILIVVAVAVTIFTAGSAWGTIVAAASLGVAALTMVIVQMIVTTLAVSYGVKLFVRAVGPELGILAAVAALAVGAYGMSNNATWSENLMAVSHGIAKESQTMEQAGLMDTLKELERNQTYYADQLQSLEDQRRELGLVQFQALQGEDFVNRPLTILGESTDDFFSRTVHAGNIGAASFQLTEYFVDAKLQLPSINETIEEINNGLSVQ

Entity 3 polymer

description	Tip attachment protein J central straight fiber domain-containing protein
formula_weight	46398.7 kDa
src_method	nat
entity_count	3

Polymer

type	polypeptide(L)
strand_id	N,O,P

MVDTCNINGVCGTGDWNGPKPGDPNMNDLLLKATPAFGGIDIEFTWPTTNPGAVGTTRLFRSTDANFAGATIRAFVNGNFYFDKTDPGSKVDQRYYYWIQLVSINGTDGDIIGPATATARPLIEQMIEQLTGEIDNGLLSQELRQEIAQIELNKLGITQEEIERAKNDDALGVRLTQIDAKMDQNTAILQEEVRARVTADSSLVQTVNTMYADFNGNIAAIQQENTALATKVNALASSVTTINATVNGDSASGKVGLVAEVQTLDGKVTQIGARWTATVDVNGLVGGFGVYNDGRTVEAGFNVDRFWIGRPGTPKNPGSYPFIIDNNIVYIKEAAIQKLTFDKLRAQDGSFIVQNGKIQADYIEAKDIVVNNIQSDNYQPGVQGWAFRPNGIMEINGTAGTGRMTINNATIKVFDQAGKLRVHIGNLQA

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6. Citations (1)

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length_a	1.000 Å
length_b	1.000 Å
length_c	1.000 Å
angle_alpha	90.00 °
angle_beta	90.00 °
angle_gamma	90.00 °
z_pdb	—

space_group	P 1
int_tables_number	1
crystal_system	—

resolution	8.50 Å
resolution_method	—
num_particles	8241

fit	/app/data/saxs_computation/ze/9ze4/9ze4.fit
pddf	/app/data/pr_computation/ze/9ze4/9ze4.pr.out
profile	/app/data/saxs_computation/ze/9ze4/9ze4.dat

Asymmetric Tail Gating Complex of Pseudomonas Phage DEV

SAXS Profile

P(r) Distribution

1. Structure Basics

Download Data

2. SAXS Parameters (CRYSOL)

3. P(r) Analysis (GNOM)

4. Crystallography & Experiment

Unit Cell

Symmetry

EM 3D

5. Entities & Polymer Info (3)

Entity 1 polymer

Polymer

Entity 2 polymer

Polymer

Entity 3 polymer

Polymer

6. Citations (1)

7. Files & Curves (10)

Files (7)

Curves (3)