9fah

Human adenovirus type 37 fiber knob in complex with 4-O,5-N-diacetylneuraminic acid

Method: X-RAY DIFFRACTION Dmax: 70.2 Å Quality: EXCELLENT

1. Protein Identity and Related Structures Protein Identity & Related Structures

Fiber

Human adenovirus D37

UniProt Q64823

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein homooligomer Homooligomer Protein × 3 PDB declaration: trimeric(3) Consistent with protein copy count Chain A; UniProt 1–365 Chain B; UniProt 1–365 Chain C; UniProt 1–365 Not recorded ANA methyl 4-O-acetyl-5-acetamido-3,5-dideoxy-D-glycero-alpha-D-galacto-non-2-ulopyranosidonic acid × 3 ZN ZINC ION × 5 ACT ACETATE ION × 8 CL CHLORIDE ION × 1 X-RAY DIFFRACTION X-ray crystallization conditions:VAPOR DIFFUSION, HANGING DROP;293 K;26% PEG 8000, 0.1 M HEPES pH 6.9, 0.05 M zinc acetate Resolution 1.65 Å R-free 0.190

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

13 other PDB entries and 16 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name Q64823_9ADEN
Isoform
PDB entities 1
Chains and sequence ranges Author chain A; PDBConstruct 1–365; UniProt 1–365 Author chain B; PDBConstruct 1–365; UniProt 1–365 Author chain C; PDBConstruct 1–365; UniProt 1–365

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

SAXS scattering curve SAXS Profile

SAXS profile for 9fah

P(r) Distance Distribution P(r) Distribution

P(r) distribution for 9fah
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2. Structure Basics 2. Structure Basics

Entry ID entry_id9fah
Deposition date deposition_date2024-05-10
Structure title titleHuman adenovirus type 37 fiber knob in complex with 4-O,5-N-diacetylneuraminic acid
Keywords keywordsfiber knob, complex, sialic acid, VIRAL PROTEIN; VIRAL PROTEIN
Experimental Method methodX-RAY DIFFRACTION

3. SAXS Parameters (CRYSOL theoretical calculation) 3. SAXS Parameters (CRYSOL)

Radius of gyration Rg (Guinier) rg_guinier23.97
Radius of gyration Rg (electron density) rg_electron22.54
Forward intensity I(0) i060130100.00
Molecular weight molecular_weight61841.0 kDa
Excluded volume excluded_volume77765 ų
Envelope volume envelope_volume87476 ų
Hydration-shell volume shell_volume30895 ų
Envelope diameter envelope_diameter71.6
Shell Rg shell_rg30.70
Envelope Rg envelope_rg22.74
Shape Rg shape_rg22.50
Total Rg total_rg23.57
Total atoms total_atoms4347
Residues n_residues543
Spherical-harmonic order n_harmonics20
q range q_range— – 0.5000 −1
Data points n_points101
Shell type shell_typedirectional
Solvent electron density solvent_density0.3340 e/ų
Shell contrast contrast_shell0.0300 e/ų
CRYSOL version crysol_version4.1.3

4. P(r) Distance Distribution (GNOM inversion) 4. P(r) Analysis (GNOM)

Maximum dimension Dmax dmax70.2
Rg (real space) rg_real23.75
Rg uncertainty (real space) rg_real_error0.26
I(0) (real space) i0_real6.0130e+07
I(0) uncertainty (real space) i0_real_error7.2510e+05
Rg (reciprocal space) rg_reciprocal23.81
I(0) (reciprocal space) i0_reciprocal60130000.0000
Solution quality estimate total_estimate0.9084
Solution quality rating solution_quality EXCELLENT a EXCELLENT solution
P(r) peaks n_peaks2
Primary peak position r_peak_primary31.8
Skewness Skewness skewness0.027
Kurtosis Kurtosis kurtosis-0.548
Angular range angular_range— – 0.3300 −1
Current regularization parameter α current_alpha0.0000
Highest regularization parameter α highest_alpha10070000.0000
Real-space data points n_real_points65
GNOM version gnom_version4.1.3
Quality Criteria quality_criteria AN1: 0.000; Oscil: 0.952; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.971; Smooth: 0.979

5. Crystallography and Experiment 5. Crystallography & Experiment

6. Entities and Polymers Entities & Polymers (6)

8. Citations (1)

9. Files and Curves (10)