9gcp

ChREBP/14-3-3 complex stabilized by AMP

Method: X-RAY DIFFRACTION Dmax: 96.9 Å Quality: REASONABLE

1. Protein Identity and Related Structures Protein Identity & Related Structures

14-3-3 protein beta/alpha, N-terminally processed

Homo sapiens

UniProt P31946

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein heterocomplex Heteromer Protein × 4 PDB declaration: tetrameric(4) Consistent with protein copy count Chain A; UniProt 3–232 Chain E; UniProt 3–232 Not recorded Carbohydrate-responsive element-binding protein × 2 (Q9NP71) AMP ADENOSINE MONOPHOSPHATE × 2 X-RAY DIFFRACTION X-ray crystallization conditions:VAPOR DIFFUSION, HANGING DROP;pH 6;293 K;50 mM MES ph 6.0 2.2M Sodium Malonate Resolution 2.59 Å R-free 0.271
2 Protein heterocomplex Heteromer Protein × 4 PDB declaration: tetrameric(4) Consistent with protein copy count Chain C; UniProt 3–232 Chain G; UniProt 3–232 Not recorded Carbohydrate-responsive element-binding protein × 2 (Q9NP71) AMP ADENOSINE MONOPHOSPHATE × 2 X-RAY DIFFRACTION X-ray crystallization conditions:VAPOR DIFFUSION, HANGING DROP;pH 6;293 K;50 mM MES ph 6.0 2.2M Sodium Malonate Resolution 2.59 Å R-free 0.271

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

16 other PDB entries and 23 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name 1433B_HUMAN
Isoform
PDB entities 1
Chains and sequence ranges Author chain A; PDBConstruct 1–230; UniProt 3–232 Author chain C; PDBConstruct 1–230; UniProt 3–232 Author chain E; PDBConstruct 1–230; UniProt 3–232 Author chain G; PDBConstruct 1–230; UniProt 3–232

Carbohydrate-responsive element-binding protein

OrganismNot specified

UniProt Q9NP71

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein heterocomplex Heteromer Protein × 4 PDB declaration: tetrameric(4) Consistent with protein copy count Chain B; UniProt 117–136 Chain F; UniProt 117–136 Not recorded 14-3-3 protein beta/alpha, N-terminally processed × 2 (P31946) AMP ADENOSINE MONOPHOSPHATE × 2 X-RAY DIFFRACTION X-ray crystallization conditions:VAPOR DIFFUSION, HANGING DROP;pH 6;293 K;50 mM MES ph 6.0 2.2M Sodium Malonate Resolution 2.59 Å R-free 0.271
2 Protein heterocomplex Heteromer Protein × 4 PDB declaration: tetrameric(4) Consistent with protein copy count Chain D; UniProt 117–136 Chain H; UniProt 117–136 Not recorded 14-3-3 protein beta/alpha, N-terminally processed × 2 (P31946) AMP ADENOSINE MONOPHOSPHATE × 2 X-RAY DIFFRACTION X-ray crystallization conditions:VAPOR DIFFUSION, HANGING DROP;pH 6;293 K;50 mM MES ph 6.0 2.2M Sodium Malonate Resolution 2.59 Å R-free 0.271

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

2 other PDB entries and 2 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name MLXPL_HUMAN
Isoform
PDB entities 2
Chains and sequence ranges Author chain B; PDBConstruct 1–20; UniProt 117–136 Author chain D; PDBConstruct 1–20; UniProt 117–136 Author chain F; PDBConstruct 1–20; UniProt 117–136 Author chain H; PDBConstruct 1–20; UniProt 117–136

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

SAXS scattering curve SAXS Profile

SAXS profile for 9gcp

P(r) Distance Distribution P(r) Distribution

P(r) distribution for 9gcp
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2. Structure Basics 2. Structure Basics

Entry ID entry_id9gcp
Deposition date deposition_date2024-08-02
最后修订 last_revision2025-08-13
Structure title titleChREBP/14-3-3 complex stabilized by AMP
Keywords keywordsAMP, carbohydrate and lipid homeostasis, lipogenesis, ChREBP, transcription factor, allosteric regulation, TRANSCRIPTION; TRANSCRIPTION
Experimental Method methodX-RAY DIFFRACTION

3. SAXS Parameters (CRYSOL theoretical calculation) 3. SAXS Parameters (CRYSOL)

Radius of gyration Rg (Guinier) rg_guinier33.77
Radius of gyration Rg (electron density) rg_electron32.80
Forward intensity I(0) i0204384000.00
Molecular weight molecular_weight112210.0 kDa
Excluded volume excluded_volume139640 ų
Envelope volume envelope_volume188140 ų
Hydration-shell volume shell_volume46519 ų
Envelope diameter envelope_diameter97.4
Shell Rg shell_rg41.31
Envelope Rg envelope_rg31.28
Shape Rg shape_rg32.81
Total Rg total_rg33.49
Total atoms total_atoms7894
Residues n_residues993
Spherical-harmonic order n_harmonics20
q range q_range— – 0.5000 −1
Data points n_points101
Shell type shell_typedirectional
Solvent electron density solvent_density0.3340 e/ų
Shell contrast contrast_shell0.0300 e/ų
CRYSOL version crysol_version4.1.3

4. P(r) Distance Distribution (GNOM inversion) 4. P(r) Analysis (GNOM)

Maximum dimension Dmax dmax96.9
Rg (real space) rg_real33.70
Rg uncertainty (real space) rg_real_error0.17
I(0) (real space) i0_real1.9880e+08
I(0) uncertainty (real space) i0_real_error2.2920e+06
Rg (reciprocal space) rg_reciprocal33.68
I(0) (reciprocal space) i0_reciprocal204400000.0000
Solution quality estimate total_estimate0.7258
Solution quality rating solution_quality REASONABLE a REASONABLE solution
P(r) peaks n_peaks1
Primary peak position r_peak_primary49.5
Skewness Skewness skewness-0.056
Kurtosis Kurtosis kurtosis-0.616
Angular range angular_range— – 0.2350 −1
Current regularization parameter α current_alpha4.0850
Highest regularization parameter α highest_alpha19010000.0000
Real-space data points n_real_points48
GNOM version gnom_version4.1.3
Quality Criteria quality_criteria AN1: 0.000; Oscil: 0.966; Stabil: 0.926; Sysdev: 0.000; Positv: 1.000; Valcen: 0.982; Smooth: 0.793

5. Crystallography and Experiment 5. Crystallography & Experiment

6. Entities and Polymers Entities & Polymers (3)

8. Citations (2)

9. Files and Curves (10)