9n4k

CryoEM structure of ALK2-ActRIIB bound to BMP6

Method: ELECTRON MICROSCOPY Dmax: 107.6 Å Quality: GOOD

1. Protein Identity and Related Structures Protein Identity & Related Structures

Activin receptor type-2B

Homo sapiens

UniProt Q13705

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Other combination Heteromer Protein × 6 其他Polymer 2 PDB declaration: hexameric(6) Consistent with protein copy count Chain A; UniProt 19–134 Chain F; UniProt 19–134 Not recorded Bone morphogenetic protein 6 × 2 (P22004) Activin receptor type-1 × 2 (Q04771) beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose × 2 NAG 2-acetamido-2-deoxy-beta-D-glucopyranose × 6 BMA beta-D-mannopyranose × 2 ELECTRON MICROSCOPY cryo-EM buffer:pH 7.5;50mM Tris-HCL, 100mM NaCl cryo-EM vitrification conditions:Cryogen ETHANE Resolution 3.20 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

7 other PDB entries and 14 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name AVR2B_HUMAN
Isoform
PDB entities 1
Chains and sequence ranges Author chain A; PDBConstruct 1–116; UniProt 19–134 Author chain F; PDBConstruct 1–116; UniProt 19–134

Bone morphogenetic protein 6

Homo sapiens

UniProt P22004

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Other combination Heteromer Protein × 6 其他Polymer 2 PDB declaration: hexameric(6) Consistent with protein copy count Chain B; UniProt 375–513 Chain E; UniProt 375–513 Not recorded Activin receptor type-2B × 2 (Q13705) Activin receptor type-1 × 2 (Q04771) beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose × 2 NAG 2-acetamido-2-deoxy-beta-D-glucopyranose × 6 BMA beta-D-mannopyranose × 2 ELECTRON MICROSCOPY cryo-EM buffer:pH 7.5;50mM Tris-HCL, 100mM NaCl cryo-EM vitrification conditions:Cryogen ETHANE Resolution 3.20 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

4 other PDB entries and 4 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name BMP6_HUMAN
Isoform
PDB entities 2
Chains and sequence ranges Author chain B; PDBConstruct 1–139; UniProt 375–513 Author chain E; PDBConstruct 1–139; UniProt 375–513

Activin receptor type-1

Homo sapiens

UniProt Q04771

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Other combination Heteromer Protein × 6 其他Polymer 2 PDB declaration: hexameric(6) Consistent with protein copy count Chain C; UniProt 21–123 Chain D; UniProt 21–123 Not recorded Activin receptor type-2B × 2 (Q13705) Bone morphogenetic protein 6 × 2 (P22004) beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose × 2 NAG 2-acetamido-2-deoxy-beta-D-glucopyranose × 6 BMA beta-D-mannopyranose × 2 ELECTRON MICROSCOPY cryo-EM buffer:pH 7.5;50mM Tris-HCL, 100mM NaCl cryo-EM vitrification conditions:Cryogen ETHANE Resolution 3.20 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

84 other PDB entries and 142 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name ACVR1_HUMAN
Isoform
PDB entities 3
Chains and sequence ranges Author chain C; PDBConstruct 1–103; UniProt 21–123 Author chain D; PDBConstruct 1–103; UniProt 21–123

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

SAXS scattering curve SAXS Profile

SAXS profile for 9n4k

P(r) Distance Distribution P(r) Distribution

P(r) distribution for 9n4k
Download Download

2. Structure Basics 2. Structure Basics

Entry ID entry_id9n4k
Deposition date deposition_date2025-02-03
Structure title titleCryoEM structure of ALK2-ActRIIB bound to BMP6
Keywords keywordsTGFB, Signaling, Receptor, Bone Morphogenetic Protein, ALK2, Ligand, Growth Factor, SIGNALING PROTEIN; SIGNALING PROTEIN
Experimental Method methodELECTRON MICROSCOPY

3. SAXS Parameters (CRYSOL theoretical calculation) 3. SAXS Parameters (CRYSOL)

Radius of gyration Rg (Guinier) rg_guinier29.89
Radius of gyration Rg (electron density) rg_electron29.37
Forward intensity I(0) i080167900.00
Molecular weight molecular_weight65750.0 kDa
Excluded volume excluded_volume80190 ų
Envelope volume envelope_volume111100 ų
Hydration-shell volume shell_volume31870 ų
Envelope diameter envelope_diameter113.9
Shell Rg shell_rg36.14
Envelope Rg envelope_rg29.24
Shape Rg shape_rg29.41
Total Rg total_rg29.88
Total atoms total_atoms4578
Residues n_residues552
Spherical-harmonic order n_harmonics20
q range q_range— – 0.5000 −1
Data points n_points101
Shell type shell_typedirectional
Solvent electron density solvent_density0.3340 e/ų
Shell contrast contrast_shell0.0300 e/ų
CRYSOL version crysol_version4.1.3

4. P(r) Distance Distribution (GNOM inversion) 4. P(r) Analysis (GNOM)

Maximum dimension Dmax dmax107.6
Rg (real space) rg_real29.92
Rg uncertainty (real space) rg_real_error1.21
I(0) (real space) i0_real8.0170e+07
I(0) uncertainty (real space) i0_real_error1.2850e+06
Rg (reciprocal space) rg_reciprocal29.91
I(0) (reciprocal space) i0_reciprocal80170000.0000
Solution quality estimate total_estimate0.8611
Solution quality rating solution_quality GOOD a GOOD solution
P(r) peaks n_peaks2
Primary peak position r_peak_primary38.6
Skewness Skewness skewness0.323
Kurtosis Kurtosis kurtosis-0.362
Angular range angular_range— – 0.2650 −1
Current regularization parameter α current_alpha0.0000
Highest regularization parameter α highest_alpha15270000.0000
Real-space data points n_real_points54
GNOM version gnom_version4.1.3
Quality Criteria quality_criteria AN1: 0.000; Oscil: 0.771; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.882; Smooth: 0.997

5. Crystallography and Experiment 5. Crystallography & Experiment

6. Entities and Polymers Entities & Polymers (6)

8. Citations (1)

9. Files and Curves (10)