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9od2

Cryo-EM structure of modified Zika virus E protein dimer complexed with a neutralizing antibody SMZAb2 Fab

Method: ELECTRON MICROSCOPY
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1. Protein Identity and Related Structures Protein Identity & Related Structures

Envelope protein E

Zika virus

UniProt A0A024B7W1

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 6 SMZAb2 Heavy chain × 2 SMZAb2 Light chain × 2 Consistent with protein count

Other States of the Same Protein in the Database

Monomer
5jmt 6ld1 6ld2 6ld3 6ld4 6ld5

6 assemblies

Homodimer
5iy3

1 assemblies

Homotetramer

None

Other homooligomers
6lnu 6lnu 6lnu 6lnu 6lnu

5 assemblies

Heteromeric or nucleic-acid complex
5gzr 5gzr 5gzr 5gzr 5gzr 5gzr 5h30 5h30 5h30 5h30 5h30 5h30

94 assemblies; showing the first 12

View Construct and Data Evidence
UniProt name POLG_ZIKVF
Isoform —
PDB entities 3
Chains and sequence ranges Author chain A； PDBConstruct 20–425； UniProt 290–695 Author chain B； PDBConstruct 20–425； UniProt 290–695

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

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2. Structure Basics 2. Structure Basics

Entry ID entry_id9od2
Deposition date deposition_date2025-04-25
Structure title titleCryo-EM structure of modified Zika virus E protein dimer complexed with a neutralizing antibody SMZAb2 Fab
Keywords keywordsneutralizing antibody, VIRAL PROTEIN, VIRAL PROTEIN-Immune System complex; VIRAL PROTEIN/IMMUNE SYSTEM
Experimental Method methodELECTRON MICROSCOPY
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3. Official assembly/model SAXS Official SAXS Profiles

This page reads only the latest assembly calculations. Every curve maps to an explicit PDB entry, official biological assembly and coordinate model.

9od2__assembly_1__model_1

Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

Download this curve (.dat)

9od2__assembly_1__model_1 | I(q)

10-2 10-1 106 107 108 q (1/Angstrom) I(q)
100 plotted points; both axes use logarithmic scales.

9od2__assembly_1__model_1 | P(r) · Pending

The new assembly/model P(r) has not been calculated yet This placeholder does not display legacy data r (Angstrom) P(r)
P(r) will be calculated and displayed separately for the same assembly/model.
Rg（Guinier）45.94 Å
Rg (electron density)46.56 Å
Total Rg46.69 Å
Atom count9304
Residues1222
Excluded volume164750 ų
Maximum q0.500 Å⁻¹
Assembly Model Structure unit Oligomeric description Status CRYSOL Actions
1 1 9od2__assembly_1__model_1 hexameric （6） Success 4.1.3-1-20251215 (887e7ef) View Download
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4. Crystallography and Experiment 4. Crystallography & Experiment

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5. Entities and Polymers Entities & Polymers (3)

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7. Citations (1)