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5h30

Cryo-EM structure of zika virus complexed with Fab C10 at pH 6.5

Method: ELECTRON MICROSCOPY
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1. Protein Identity and Related Structures Protein Identity & Related Structures

structural protein E

OrganismNot specified

UniProt A0A024B7W1

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 720 IgG C10 heavy chain × 180 IgG C10 light chain × 180 Consistent with protein count
2 Protein heterocomplex Heteromer Protein 12 IgG C10 heavy chain × 3 IgG C10 light chain × 3 Consistent with protein count
3 Protein heterocomplex Heteromer Protein 60 IgG C10 heavy chain × 15 IgG C10 light chain × 15 Consistent with protein count
4 Protein heterocomplex Heteromer Protein 72 IgG C10 heavy chain × 18 IgG C10 light chain × 18 Consistent with protein count
5 Protein heterocomplex Heteromer Protein 12 IgG C10 heavy chain × 3 IgG C10 light chain × 3 Consistent with protein count
6 Protein heterocomplex Heteromer Protein 720 IgG C10 heavy chain × 180 IgG C10 light chain × 180 Consistent with protein count

Other States of the Same Protein in the Database

Monomer
5jmt 6ld1 6ld2 6ld3 6ld4 6ld5

6 assemblies

Homodimer
5iy3

1 assemblies

Homotetramer

None

Other homooligomers
6lnu 6lnu 6lnu 6lnu 6lnu

5 assemblies

Heteromeric or nucleic-acid complex
5gzr 5gzr 5gzr 5gzr 5gzr 5gzr 5h30 5h30 5h30 5h30 5h30 5h30

94 assemblies; showing the first 12

View Construct and Data Evidence
UniProt name A0A024B7W1_ZIKV
Isoform —
PDB entities 1, 2
Chains and sequence ranges Author chain A； PDBConstruct 1–504； UniProt 291–794 Author chain B； PDBConstruct 1–504； UniProt 291–794 Author chain C； PDBConstruct 1–504； UniProt 291–794 Author chain D； PDBConstruct 1–75； UniProt 216–290 Author chain E； PDBConstruct 1–75； UniProt 216–290 Author chain F； PDBConstruct 1–75； UniProt 216–290

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

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2. Structure Basics 2. Structure Basics

Entry ID entry_id5h30
Deposition date deposition_date2016-10-19
Structure title titleCryo-EM structure of zika virus complexed with Fab C10 at pH 6.5
Keywords keywordsAntibody, VIRUS-IMMUNE SYSTEM complex; VIRUS/IMMUNE SYSTEM
Experimental Method methodELECTRON MICROSCOPY
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3. Official assembly/model SAXS Official SAXS Profiles

This page reads only the latest assembly calculations. Every curve maps to an explicit PDB entry, official biological assembly and coordinate model.

5h30__assembly_1__model_1

Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

Download this curve (.dat)

5h30__assembly_1__model_1 | I(q)

10-2 10-1 106 107 108 109 1010 1011 1012 q (1/Angstrom) I(q)
100 plotted points; both axes use logarithmic scales.

5h30__assembly_1__model_1 | P(r) · Pending

The new assembly/model P(r) has not been calculated yet This placeholder does not display legacy data r (Angstrom) P(r)
P(r) will be calculated and displayed separately for the same assembly/model.
Rg（Guinier）0.00 Å
Rg (electron density)216.30 Å
Total Rg216.30 Å
Atom count0
Residues0
Excluded volume19451000 ų
Maximum q0.500 Å⁻¹
Assembly Model Structure unit Oligomeric description Status CRYSOL Actions
1 1 5h30__assembly_1__model_1 720-meric （720） Success 4.1.3-1-20251215 (887e7ef) View Download
2 1 5h30__assembly_2__model_1 dodecameric （12） Excluded — —
Exclusion reason： Auxiliary symmetry representation; not a complete or representative biological assembly.
3 1 5h30__assembly_3__model_1 60-meric （60） Excluded — —
Exclusion reason： Auxiliary symmetry representation; not a complete or representative biological assembly.
4 1 5h30__assembly_4__model_1 72-meric （72） Excluded — —
Exclusion reason： Auxiliary symmetry representation; not a complete or representative biological assembly.
5 1 5h30__assembly_5__model_1 dodecameric （12） Excluded — —
Exclusion reason： Auxiliary symmetry representation; not a complete or representative biological assembly.
6 1 5h30__assembly_6__model_1 720-meric （720） Excluded — —
Exclusion reason： Auxiliary symmetry representation; not a complete or representative biological assembly.
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4. Crystallography and Experiment 4. Crystallography & Experiment

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5. Entities and Polymers Entities & Polymers (4)

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7. Citations (1)