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9pyr

Importin alpha 2 in complex with Haliotid herpesvirus 1 large tegument protein NLS region

Method: X-RAY DIFFRACTION D_max: 99.8 Å Quality: GOOD

SAXS Profile

P(r) Distribution

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1. Structure Basics

entry_id	9pyr
deposition_date	2025-08-08
last_revision	2025-10-08
title	Importin alpha 2 in complex with Haliotid herpesvirus 1 large tegument protein NLS region
keywords	Importin alpha 1, Karyopherin subunit alpha-2, haliotid herpesvirus 1 large tegument protein, UL36h, TRANSPORT PROTEIN; TRANSPORT PROTEIN
method	X-RAY DIFFRACTION

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Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

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2. SAXS Parameters (CRYSOL)

rg_guinier	28.39 Å
rg_electron	28.17 Å
i0	35813900.00
molecular_weight	47981.0 kDa
excluded_volume	60726 Å³
envelope_volume	75102 Å³
shell_volume	23794 Å³
envelope_diameter	102.6 Å
shell_rg	33.21 Å
envelope_rg	28.35 Å
shape_rg	28.18 Å
total_rg	28.68 Å
total_atoms	6856
n_residues	440
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

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3. P(r) Analysis (GNOM)

dmax	99.8 Å
rg_real	28.76 Å
rg_real_error	0.87 Å
i0_real	3.5810e+07
i0_real_error	5.4090e+05
rg_reciprocal	28.65 Å
i0_reciprocal	35810000.0000
total_estimate	0.7917
solution_quality	GOOD a GOOD solution
n_peaks	2
r_peak_primary	23.2 Å
skewness	0.542
kurtosis	-0.389
angular_range	— – 0.2800 Å⁻¹
current_alpha	0.0000
highest_alpha	15450000.0000
n_real_points	57
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.629; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.492; Smooth: 0.909

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4. Crystallography & Experiment

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5. Entities & Polymer Info (3)

Entity 1 polymer

description	GLU-THR-LYS-LYS-ARG-ARG-ARG-ILE
formula_weight	1333.6 kDa
src_method	syn
entity_count	2

Polymer

type	polypeptide(L)
strand_id	C,M
atom_count	6870

ETKKRRRILE

Entity 2 polymer

description	Importin subunit alpha-1
formula_weight	55268.5 kDa
src_method	man
entity_count	1

Polymer

type	polypeptide(L)
strand_id	E

MHHHHHHSSGLVPRGSGMLETAAALFERNHMDSPDLGTDDDDLAMADIGSNQGTVNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYFSVEEEEDQNVVPETTSEGFAFQVQDGAPGTFNF

Source

organism	Mus musculus
common_name	house mouse
ncbi_taxonomy_id	10090
host_organism	Escherichia coli

Entity 3 water

description	water
formula_weight	18.0 kDa
src_method	nat
entity_count	14

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6. Citations (1)

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length_a	78.537 Å
length_b	90.847 Å
length_c	100.948 Å
angle_alpha	90.00 °
angle_beta	90.00 °
angle_gamma	90.00 °
z_pdb	8

space_group	P 21 21 21
int_tables_number	19
crystal_system	orthorhombic

resolution	2.600 Å
resolution_low	29.710 Å
r_factor	0.1820
r_work	0.1803
r_free	0.2171

fit	/app/data/saxs_computation/py/9pyr/9pyr.fit
pddf	/app/data/pr_computation/py/9pyr/9pyr.pr.out
profile	/app/data/saxs_computation/py/9pyr/9pyr.dat

Importin alpha 2 in complex with Haliotid herpesvirus 1 large tegument protein NLS region

SAXS Profile

P(r) Distribution

1. Structure Basics

Download Data

2. SAXS Parameters (CRYSOL)

3. P(r) Analysis (GNOM)

4. Crystallography & Experiment

Unit Cell

Symmetry

Refinement

Diffraction

5. Entities & Polymer Info (3)

Entity 1 polymer

Polymer

Entity 2 polymer

Polymer

Source

Entity 3 water

6. Citations (1)

7. Files & Curves (10)

Files (7)

Curves (3)