SAXSdb — 9q3a

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1. Structure Basics

entry_id	9q3a
deposition_date	2025-08-18
title	Structure of the Borna Disease Virus 1 L and co-factor P Protein in an apo state
keywords	L Protein, Polymerase, NNS, Phosphoprotein, VIRAL PROTEIN, TRANSFERASE; VIRAL PROTEIN, TRANSFERASE
method	ELECTRON MICROSCOPY

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Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

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2. SAXS Parameters (CRYSOL)

rg_guinier	42.08 Å
rg_electron	41.50 Å
i0	590577000.00
molecular_weight	202730.0 kDa
excluded_volume	255790 Å³
envelope_volume	357450 Å³
shell_volume	71962 Å³
envelope_diameter	141.0 Å
shell_rg	46.68 Å
envelope_rg	40.98 Å
shape_rg	41.46 Å
total_rg	41.96 Å
total_atoms	14223
n_residues	1800
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

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3. P(r) Analysis (GNOM)

dmax	139.8 Å
rg_real	42.02 Å
rg_real_error	1.08 Å
i0_real	5.9060e+08
i0_real_error	1.0590e+07
rg_reciprocal	42.08 Å
i0_reciprocal	590600000.0000
total_estimate	0.8787
solution_quality	GOOD a GOOD solution
n_peaks	1
r_peak_primary	51.5 Å
skewness	0.305
kurtosis	-0.326
angular_range	— – 0.1900 Å⁻¹
current_alpha	0.0000
highest_alpha	76060000.0000
n_real_points	39
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.844; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.994; Smooth: 0.893

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4. Crystallography & Experiment

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5. Entities & Polymer Info (3)

Entity 1 polymer

description	RNA-directed RNA polymerase L
formula_weight	193155.9 kDa
ec_number	2.7.7.48
src_method	man
entity_count	1

Polymer

type	polypeptide(L)
strand_id	A
atom_count	14223

MSFHASLLREEETPRPVAGINRTDQSLKNPLLGTEVSFCLKSSSLPHHVRALGQIKAKNLASCDYYLLFRQVVLPPEVYPIGVLIRAAEAILTVIVSAWKLDHMTKTLYSSVRYALTNPRVRAQLELHIAYQRIVGQVSYSREADIGPKRLGNMSLQFIQSLVIATIDTTSCLMTYNHFLAAADTAKSRCHLLIASVVQGALWEQGSFLDHIINMIDTIDSINLPHDDYFTIIKSISPYSQGLVMGRHNVSVSSDFASVFTIPESCPQLDSLLKKLLQLDPVLLLMVSSVQKSWYFPEIRMVDGSREQLHKMRVELETPQALLSYGHTLLSIFRAEFIKGYVSKNAKWPPVHLLPGCDKSIKNARELGRWSPVFDRRWQLFAKVVILRIADLDMDPDFNDIVSDKAIISSRRDWVFEYNAAAFWKKYGERLERPPARSGPSRLVNALIDGRLDNIPALLEPFYRGAVEFEDRLTVLVPKEKELKVKGRFFSKQTLAIRIYQVVAEAALKNEVMPYLKTHSMTMSSTALTHLLNRLSHTITKGDSFVINLDYSSWCNGFRPELQAPLCRQLDQMFNCGYFFRTGCTLPCFTTFIIQDRFNPPYSFRGEPVEDGVTCAVGTKTMGEGMRQKLWTILTSCWEIIALREINVTFNILGQGDNQTIIVHKSASQNNQLLAERALGALYKHARLAGHNLKVEECWVSDCLYEYGKKLFFRGVPVPGCLKQLSRVTDSTGELFPNLYSKLACLTSSCLSAAMADTSPWVALATGVCLYLIELYVELPPAIMQDESLLTTLCLVGPSIGGLPTPATLPSVFFRGMSDPLPFQLALLQTLIKTTGVTCSLVNRVVKLRIAPYPDWLSLVTDPTSLNIAQVYRPERQIRRWIEEAIATSSHSSRIATFFQQPLTEMAQLLARDLSTMMPLRPRDMSALFALSNVAYGLSIIDLFQKSSTVVSASQAVHIEDVALESVRYKESIIQGLLDTTEGYNMQPYLEGCTYLAAKQLRRLTWGRDLVGVTMPFVAEQFHPHSSVGAKAELYLDAIIYCPQETLRSHHLTTRGDQPLYLGSNTAVKVQRGEITGLTKSRAANLVKDTLVLHQWYKVRKVTDPHLNTLMARFLREKGYTSDARPSIQGGTLTHRLPSRGDSRQGLTGYVNILSTWLRFSSDYLHSFSKSSDDYTIHFQHVFTYGCLYADSVIRSGGVISTPYLLSASCKTCFEKIDSEEFVLACEPQYRGAEWLISKPVTVPEQIIDAEVEFDPCVSASYCLGILIGKSFLVDIRASGHDIMEQRTWANLERFSVSDMQKLPWSIVIRSLWRFLIGARLLQFEKAGLIRMLYAATGPTFSFLMKVFQDSALLMDCAPLDRLSPRINFHSRGDLVAKLVLLPFINPGIVEIEVSRIDSKYHAVSEANMDLYIAAAKSVGVKPTQFVEETNDFTARGHHHGCYSLSWSKSRNQSQVLKMVVRKLKLCVLYIYPTVDPAVALDLCHLPALTIILVLGGDPAYYERLLEMDLCGAVSSRVDIPHSLAARTHRGFTIGPDAGPGVIRLDKLESVCYAHPCLEELEFNAYLDSELVDISDMCCLPLATPCKALFRPVYRSLQSFRLALMDNYSFVMDLITIRGLDIRPHLEEFDELLVVGQHILGQPVLVEVVYYVGVVGKRPVLARHPWSADLKRITVGGRAPCPSAAGLRDEDCRGSLLVGLPAGLTQLLVVDGTHHHHHHHH

Source

organism	Borna disease virus 1
ncbi_taxonomy_id	1714621
host_organism	Spodoptera aff. frugiperda 1 BOLD-2017

Entity 2 polymer

description	Isoform p24 of Phosphoprotein
formula_weight	22489.6 kDa
src_method	man
entity_count	4

Polymer

type	polypeptide(L)
strand_id	D,B,C,E

MATRPSSLVDSLEDEEDPQTLRRERSGSPRPRKIPRNALTQPVDQLLKDLRKNPSMISDPDQRTGREQLSNDELIKKLVTELAENSMIEAEEVRGTLGDISARIEAGFESLSALQVETIQTAQRCDHSDSIRILGENIKILDRSMKTMMETMKLMMEKVDLLYASTAVGTSAPMLPSHPAPPRIYPQLPSAPTADEWDIIP

Source

organism	Borna disease virus 1
ncbi_taxonomy_id	1714621
host_organism	Spodoptera aff. frugiperda 1 BOLD-2017

Entity 3 non-polymer

description	ZINC ION
formula_weight	65.4 kDa
src_method	man
entity_count	1

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6. Citations (1)

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length_a	1.000 Å
length_b	1.000 Å
length_c	1.000 Å
angle_alpha	90.00 °
angle_beta	90.00 °
angle_gamma	90.00 °
z_pdb	—

space_group	P 1
int_tables_number	1
crystal_system	—

resolution	2.77 Å
resolution_method	—
num_particles	224617

fit	/app/data/saxs_computation/q3/9q3a/9q3a.fit
pddf	/app/data/pr_computation/q3/9q3a/9q3a.pr.out
profile	/app/data/saxs_computation/q3/9q3a/9q3a.dat

Structure of the Borna Disease Virus 1 L and co-factor P Protein in an apo state

SAXS Profile

P(r) Distribution

1. Structure Basics

Download Data

2. SAXS Parameters (CRYSOL)

3. P(r) Analysis (GNOM)

4. Crystallography & Experiment

Unit Cell

Symmetry

EM 3D

5. Entities & Polymer Info (3)

Entity 1 polymer

Polymer

Source

Entity 2 polymer

Polymer

Source

Entity 3 non-polymer

6. Citations (1)

7. Files & Curves (10)

Files (7)

Curves (3)