9q3j
;Structures of LarA-like nickel-pincer nucleotide cofactor-utilizing enzyme with a single catalytic histidine residue from Blautia wexlerae ;
SAXS Profile
P(r) Distribution
1. Structure Basics
| entry_id | 9q3j |
| deposition_date | 2025-08-18 |
| last_revision | 2025-09-17 |
| title | ;Structures of LarA-like nickel-pincer nucleotide cofactor-utilizing enzyme with a single catalytic histidine residue from Blautia wexlerae ; |
| keywords | Racemase and epimerase activity, acting on hydroxy acids and derivatives, metal ion binding, catalytic activity, ISOMERASE; ISOMERASE |
| method | ELECTRON MICROSCOPY |
Download Data
2. SAXS Parameters (CRYSOL)
| rg_guinier | 47.16 Å |
| rg_electron | 46.70 Å |
| i0 | 2410920000.00 |
| molecular_weight | 409480.0 kDa |
| excluded_volume | 510950 ų |
| envelope_volume | 679940 ų |
| shell_volume | 113510 ų |
| envelope_diameter | 144.1 Å |
| shell_rg | 56.80 Å |
| envelope_rg | 45.68 Å |
| shape_rg | 46.68 Å |
| total_rg | 47.12 Å |
| total_atoms | 28789 |
| n_residues | 3611 |
| n_harmonics | 20 |
| q_range | — – 0.5000 Å−1 |
| n_points | 101 |
| shell_type | directional |
| solvent_density | 0.3340 e/ų |
| contrast_shell | 0.0300 e/ų |
| crysol_version | 4.1.3 |
3. P(r) Analysis (GNOM)
| dmax | 141.5 Å |
| rg_real | 46.71 Å |
| rg_real_error | 0.58 Å |
| i0_real | 2.4110e+09 |
| i0_real_error | 3.6380e+07 |
| rg_reciprocal | 47.16 Å |
| i0_reciprocal | 2412000000.0000 |
| total_estimate | 0.8876 |
| solution_quality | GOOD a GOOD solution |
| n_peaks | 1 |
| r_peak_primary | 64.3 Å |
| skewness | 0.011 |
| kurtosis | -0.514 |
| angular_range | — – 0.1650 Å−1 |
| current_alpha | 0.0000 |
| highest_alpha | 407100000.0000 |
| n_real_points | 34 |
| gnom_version | 4.1.3 |
| quality_criteria | AN1: 0.000; Oscil: 0.909; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.940; Smooth: 0.868 |