9q88
High-resolution structure of RNF38 RING domain
SAXS Profile
P(r) Distribution
1. Structure Basics
| entry_id | 9q88 |
| deposition_date | 2025-02-23 |
| title | High-resolution structure of RNF38 RING domain |
| keywords | Ubiquitination, E3 RING, LIGASE; LIGASE |
| method | X-RAY DIFFRACTION |
Download Data
2. SAXS Parameters (CRYSOL)
| rg_guinier | 14.55 Å |
| rg_electron | 13.29 Å |
| i0 | 2241300.00 |
| molecular_weight | 9251.0 kDa |
| excluded_volume | 11126 ų |
| envelope_volume | 13814 ų |
| shell_volume | 9369 ų |
| envelope_diameter | 51.2 Å |
| shell_rg | 18.16 Å |
| envelope_rg | 14.00 Å |
| shape_rg | 13.32 Å |
| total_rg | 14.31 Å |
| total_atoms | 1236 |
| n_residues | 79 |
| n_harmonics | 20 |
| q_range | — – 0.5000 Å−1 |
| n_points | 101 |
| shell_type | directional |
| solvent_density | 0.3340 e/ų |
| contrast_shell | 0.0300 e/ų |
| crysol_version | 4.1.3 |
3. P(r) Analysis (GNOM)
| dmax | 53.3 Å |
| rg_real | 14.58 Å |
| rg_real_error | 0.46 Å |
| i0_real | 2.2410e+06 |
| i0_real_error | 2.6690e+04 |
| rg_reciprocal | 14.58 Å |
| i0_reciprocal | 2241000.0000 |
| total_estimate | 0.8191 |
| solution_quality | GOOD a GOOD solution |
| n_peaks | 2 |
| r_peak_primary | 16.2 Å |
| skewness | 0.454 |
| kurtosis | 0.050 |
| angular_range | — – 0.5000 Å−1 |
| current_alpha | 0.0000 |
| highest_alpha | 314400.0000 |
| n_real_points | 80 |
| gnom_version | 4.1.3 |
| quality_criteria | AN1: 0.000; Oscil: 0.587; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.887; Smooth: 0.996 |