9q8j
CryoEM structure of modified Turnip Yellows Virus devoid of minor capsid protein readthrough domain
SAXS Profile
P(r) Distribution
1. Structure Basics
| entry_id | 9q8j |
| deposition_date | 2025-02-24 |
| last_revision | 2025-05-07 |
| title | CryoEM structure of modified Turnip Yellows Virus devoid of minor capsid protein readthrough domain |
| keywords | virus; VIRUS |
| method | ELECTRON MICROSCOPY |
Download Data
2. SAXS Parameters (CRYSOL)
| rg_guinier | 26.63 Å |
| rg_electron | 25.79 Å |
| i0 | 35216900.00 |
| molecular_weight | 45546.0 kDa |
| excluded_volume | 56740 ų |
| envelope_volume | 69055 ų |
| shell_volume | 23476 ų |
| envelope_diameter | 92.3 Å |
| shell_rg | 31.44 Å |
| envelope_rg | 26.13 Å |
| shape_rg | 25.74 Å |
| total_rg | 26.57 Å |
| total_atoms | 3208 |
| n_residues | 419 |
| n_harmonics | 20 |
| q_range | — – 0.5000 Å−1 |
| n_points | 101 |
| shell_type | directional |
| solvent_density | 0.3340 e/ų |
| contrast_shell | 0.0300 e/ų |
| crysol_version | 4.1.3 |
3. P(r) Analysis (GNOM)
| dmax | 86.5 Å |
| rg_real | 26.71 Å |
| rg_real_error | 0.64 Å |
| i0_real | 3.5220e+07 |
| i0_real_error | 4.8790e+05 |
| rg_reciprocal | 26.69 Å |
| i0_reciprocal | 35220000.0000 |
| total_estimate | 0.7284 |
| solution_quality | REASONABLE a REASONABLE solution |
| n_peaks | 2 |
| r_peak_primary | 24.5 Å |
| skewness | 0.354 |
| kurtosis | -0.540 |
| angular_range | — – 0.3000 Å−1 |
| current_alpha | 0.0000 |
| highest_alpha | 7798000.0000 |
| n_real_points | 61 |
| gnom_version | 4.1.3 |
| quality_criteria | AN1: 0.000; Oscil: 0.913; Stabil: 1.000; Sysdev: 0.291; Positv: 1.000; Valcen: 0.887; Smooth: 0.966 |