SAXSdb — 9qe7

▼

1. Structure Basics

entry_id	9qe7
deposition_date	2025-03-07
title	Membrane-distal part of extracellular domain of the Fap2 autotransporter adhesin from Fusobacterium nucleatum ATCC23726
keywords	Type V secretion system, autotransporter, colorectal cancer, bacterial adhesion, CELL ADHESION; CELL ADHESION
method	ELECTRON MICROSCOPY

▼

Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

▼

2. SAXS Parameters (CRYSOL)

rg_guinier	62.15 Å
rg_electron	64.42 Å
i0	368154000.00
molecular_weight	154180.0 kDa
excluded_volume	191170 Å³
envelope_volume	257610 Å³
shell_volume	41333 Å³
envelope_diameter	226.7 Å
shell_rg	45.82 Å
envelope_rg	65.49 Å
shape_rg	64.39 Å
total_rg	64.03 Å
total_atoms	10826
n_residues	1483
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

▼

3. P(r) Analysis (GNOM)

dmax	246.2 Å
rg_real	64.07 Å
rg_real_error	4.87 Å
i0_real	3.6820e+08
i0_real_error	8.9150e+06
rg_reciprocal	60.48 Å
i0_reciprocal	366000000.0000
total_estimate	0.5898
solution_quality	REASONABLE a REASONABLE solution
n_peaks	2
r_peak_primary	29.5 Å
skewness	0.637
kurtosis	-0.557
angular_range	— – 0.1250 Å⁻¹
current_alpha	0.0000
highest_alpha	7656000.0000
n_real_points	26
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.022; Stabil: 0.999; Sysdev: 1.000; Positv: 1.000; Valcen: 0.021; Smooth: 0.581

▶

4. Crystallography & Experiment

▶

5. Entities & Polymer Info (1)

Entity 1 polymer

description	Outer membrane autotransporter barrel domain protein
formula_weight	340269.4 kDa
src_method	man
entity_count	1

Polymer

type	polypeptide(L)
strand_id	A
atom_count	10826

EEVNLENSQVATREELKTSVGNVQTKLNILRNENKEKIKNLRLELIQLMEQGDQVVKSPWSSWQFGMNYFYENWRSTYKGSGDKSEKYVFNGIYTRGNWKVRNAMDMAENQRVGGRPLTPGNDSLNSWKNASNSSGGGVTIDKDTSIGSSTNGNKSWGLVDLRDLREPTNEVEILAHISPKEVTKQVISLNITEPTVQTLEAPDVNPQVNEPLPAPVIELPEVETVTINPLSINAPSAPTAPSAPTINIAITAPSAPVPPTINVVPASPSTPSAPTINIGIQPPSITPLSITTPDSVDAPNVVSPQIKPVDFTVDPGGDSNVYSSEKHNSHQGWKATWDKTINVTELTNRNYVSLTRDVVDSTIPDDQVINVTKPNNRAMVVDEVRKNGIKVDFKGTINLQRSQNVGIDLQGTHQGSISTPLIANIYNSGKIIGNAKYGSTANKEQIAFGFNNADGSNNTTMTNMVNKGEITLNAPSSAGIQLKPEDPHDWQPGAPNYWNAAPLQIGNKTPNKIKGRVLMKADNQKDINLNGSGSFGMVTVFNEGVPKRLFAPSYVANYENLRSERTYDGERVLPGGEIGRSALSDSKYTSGVYNTGNININGDSSIGVGLLQEIQEVKLAGNINIGTKAVAQETDISNLPNAGSKTYDKNKVEEAVGVFAGVPTMPVKPGEKDTLINSSGARNTATSLVGTETVEINGNISLGEHATQSIGALVGDTEIDLNKGQLTENGVNKGSNVDRKLKRSGDITAKSNSVINVGGKKNYGFVVSNSAHSSKFGTTVDSLEYNVDKTHHGKGINEGIINIIGDESVGFAMIKGGNSKSSGTISVKDNAENSIGFYGKEDSFTNSGTIEVTSAKKKNKAVVLDGTNASNKINFTNTGNIYVNTSDNNNTNLDGNGNIGIYAQGNYKVEHNSGIVKAGKDVIAFYVKDSTGEVNINAPIELANSSKGTTIGIYSDGNAKVKFGTGSKLKIGEKAVGLYSADPTKFNNTFKIESGKTLDVELGKNSTFGLLNGNNTVTNSPLLSKYLNNNTSDKINIVSFGEGASLFYATSKAKAILDEDYKVTNGDAISTAVLVANNGANVEIASGKKLETNTNAGLIAINGTVGFTSVAKNNGTLISTRIDKGIGIYTSAANGENSGTITMQNKNAVGILGSKDSNLKNTGKIELEAVSSAGVYAEDSNMINSGTTSEIIVNKETSVGIYAKETSISSVSKNVKNEGKIEIKADGDGKSAGIYSKKEGGAKLTIENTGNIEVAQKASAGIYAKNESTQANTQSEVTNSGLVKMSAENSIGIMGEKSKITNTGTGTKGIEIVEKKSAGILVTNESAVINSGRISLSNSSISASSDGLVGISVDGSSTGENDASGEIKVDAAYSTGMLSSGGGITNAGKIALEKKESVGMYATNANVTNSGATPKGIFIKDEKSVGIYSKINSSSIANKTVTNSGTIDIAGTSKTGSAGIYSIIESGATKKLSVVNNGNITINQKKSVGIYAKNESSHANTESDVTNSGKIEVKNEGSAGVLAEKYKVTNTGSGTNGIIVSAKKSAGIIGKLGSEIINSGIIKTEIATPTVATDGVVGISLNNSKATNTSGGVITLDTDYSTGMYGEANSQLTNEGNITGTNKEYIVGMAGDSSTVTNKNIITLNGKKATGIFGKNSSTLLNETTGKITTKEEESVGMYSSSSLKATNKGTIITEKKTSAGMLGDKANIENDSSITTKEEMSAGMYVKNGTSKATNKGTVTTEKKTSAGILAEIDEANGGTVSGLNETTGTITVSEETSAGMLGKVKSAVTASTAKLSLTNKKDININTKNSAGIMVVNESTAVGKENVLAENTGIINLTSSSATNEKNIGILANKATGINTGNINVNSKESIGMLGQNASSITNNKTITLSGEKGIGMLSKDTSSIADNNDTINVNGKESLGMLGEDSGTVKNNKTISVTAEKGVGIFVRDNGVGKGSGTGENTSTGTITLENKEAVGIFAKNNGTSDSAKNSGTINLGKADGSTIKESLIGMFAQAEAGKKANVKNTKDINVNTKKSVGIYAKNDASNITDVDLENTGDININSKESAGVYAPKANISKVGTITLKNSIDSNGSSAVYVSKGGKVANTAGAKINLGTVNQNRVAYYVNGKDSALAGADIGKITGYGVGVYLQGTSGDKATLDKNTSKLDYTLQGTGNGIIGLLLKGETDIQSYTKGIKVGNTVAATSPSDKAKYAIGIYADAQGTAGTPYNITTPITAGKSGVGIFADKDSNINYTGNMEIGDGTTAGTGIFITKKIGATGGKVTLGTNTIKLKGTKGVVAIASEGTTFNGGNATIELVGSNIQGVGVYAKKGSTVNIDHWTFNNNGNSAEEVRSEEGRVYINANKNLKPKMVLTHVINGETSIATGKTVTSVNDGSITAKENIGLMAEGIKNHSMTWQEGNFEAVNHGIIDFSAAEKSTAMFINSARAKNDGTIKVGKNSIGIYGFYNKDTRKYDGASTNPDPNKLELETTSNSKMSLGDASTGMYLTNAEKIENKGGQITSESGATKNVGIYAVNGQDTKVSANNKILNMTTATNINLGNGSVGLYSKGQSNTVRNTVTNTGDITVGDKITGSPSVAMYAENTNLTTNSKITVGKDGIAFYGKNSDITAKGSANFSNKGVLAYLENSKFVSHLGNLGSTQNTMLYLKNSIAQLDGAGTKVDMDVADGYTGAYIEGNSTLTGVKTIKLGQDSTGLFLKDANFVSNAESITGTKDKARGILATNSNLTNNSKIFLSGAESIGIYSNANNTKSVVNNGELTIAGKKTLGVFLKGSQSFENKANINIADSANSLEPTIGIYTAEGSSNIKHTSGTIDVGQKSIGIYSTTNSNVEMNGGKIHVKDQGVGIYKQNGKATIKGELDIDTHIATTKDSEPTGVYAVNGTEINDQASKISIGAKSYGFILNNTDPNKTNIYTNTDAGTVSLGNDSVFLYSNGKANIINNRTINANGASHLIAFYIKNGGNFTNNGTIDFSTGKGNIGIYAPGGKATNKGRVYVGKTDDIDPMTGKVYSDVSKIVYGIGMAADNGGYIKNDGEIRIYNNKSIGMYGKGIGTTVENTGKIYLDGSRATATDKIQSMTGVYVDDGAKFINRGEIRTTDSYAGRDGKVNENVTGLVGVAVMNGSTLENHGKILIDADNSYGVIIRGKRDSKGNVERYAVIKNYGEIKVRGKGTWGISWKDVSQAYIDELQKQINDKISSDPEGQALRAGSAHHHHHHHHSAGENLYFQ

Source

organism	Fusobacterium nucleatum
ncbi_taxonomy_id	851
host_organism	Escherichia coli

▶

6. Citations (1)

▶

length_a	1.000 Å
length_b	1.000 Å
length_c	1.000 Å
angle_alpha	90.00 °
angle_beta	90.00 °
angle_gamma	90.00 °
z_pdb	—

space_group	P 1
int_tables_number	1
crystal_system	—

resolution	4.400 Å
resolution_low	— Å
r_factor	—
r_work	—
r_free	—

resolution	4.40 Å
resolution_method	—
num_particles	151825

fit	/app/data/saxs_computation/qe/9qe7/9qe7.fit
pddf	/app/data/pr_computation/qe/9qe7/9qe7.pr.out
profile	/app/data/saxs_computation/qe/9qe7/9qe7.dat

Membrane-distal part of extracellular domain of the Fap2 autotransporter adhesin from Fusobacterium nucleatum ATCC23726

SAXS Profile

P(r) Distribution

1. Structure Basics

Download Data

2. SAXS Parameters (CRYSOL)

3. P(r) Analysis (GNOM)

4. Crystallography & Experiment

Unit Cell

Symmetry

Refinement

EM 3D

5. Entities & Polymer Info (1)

Entity 1 polymer

Polymer

Source

6. Citations (1)

7. Files & Curves (10)

Files (7)

Curves (3)