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9qep

Cryo-EM structure of O-GlcNAcase from Trichoplax Adhaerens

Method: ELECTRON MICROSCOPY Dmax: 97.1 Å Quality: GOOD

SAXS Profile

SAXS profile for 9qep

P(r) Distribution

P(r) distribution for 9qep
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1. Structure Basics

entry_id9qep
deposition_date2025-03-10
titleCryo-EM structure of O-GlcNAcase from Trichoplax Adhaerens
keywordsGH84 hydrolase, HYDROLASE; HYDROLASE
methodELECTRON MICROSCOPY
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Download Data

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2. SAXS Parameters (CRYSOL)

rg_guinier30.38 Å
rg_electron29.48 Å
i0146884000.00
molecular_weight98333.0 kDa
excluded_volume123840 ų
envelope_volume151780 ų
shell_volume42213 ų
envelope_diameter95.4 Å
shell_rg37.52 Å
envelope_rg29.45 Å
shape_rg29.45 Å
total_rg30.29 Å
total_atoms6942
n_residues848
n_harmonics20
q_range— – 0.5000 Å−1
n_points101
shell_typedirectional
solvent_density0.3340 e/ų
contrast_shell0.0300 e/ų
crysol_version4.1.3
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3. P(r) Analysis (GNOM)

dmax97.1 Å
rg_real30.28 Å
rg_real_error0.69 Å
i0_real1.4690e+08
i0_real_error2.3640e+06
rg_reciprocal30.32 Å
i0_reciprocal146900000.0000
total_estimate0.8953
solution_quality GOOD a GOOD solution
n_peaks2
r_peak_primary37.4 Å
skewness0.263
kurtosis-0.397
angular_range— – 0.2600 Å−1
current_alpha0.0000
highest_alpha48590000.0000
n_real_points53
gnom_version4.1.3
quality_criteria AN1: 0.000; Oscil: 0.901; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 1.000; Smooth: 0.932
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4. Crystallography & Experiment

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5. Entities & Polymer Info (1)

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6. Citations (1)

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7. Files & Curves (10)