9qgm

Cryo-EM structure of the PlPVC1 central spike, 3-fold symmetrized (C3), in extended state

Method: ELECTRON MICROSCOPY
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1. Protein Identity and Related Structures Protein Identity & Related Structures

Photorhabdus luminescens subsp. laumondii TTO1 complete genome segment 6/17

Photorhabdus luminescens

UniProt Q7N647

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 6 Photorhabdus luminescens subsp. laumondii TTO1 complete genome segment 6/17 × 3 (Q7N645) Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name Q7N647_PHOLL
Isoform —
PDB entities 1
Chains and sequence ranges Author chain 8A; PDBConstruct 1–533; UniProt 1–533 Author chain 8B; PDBConstruct 1–533; UniProt 1–533 Author chain 8C; PDBConstruct 1–533; UniProt 1–533

Photorhabdus luminescens subsp. laumondii TTO1 complete genome segment 6/17

Photorhabdus luminescens

UniProt Q7N645

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 6 Photorhabdus luminescens subsp. laumondii TTO1 complete genome segment 6/17 × 3 (Q7N647) Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name Q7N645_PHOLL
Isoform —
PDB entities 2
Chains and sequence ranges Author chain 6A; PDBConstruct 1–59; UniProt 1–59 Author chain 6B; PDBConstruct 1–59; UniProt 1–59 Author chain 6C; PDBConstruct 1–59; UniProt 1–59

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

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2. Structure Basics 2. Structure Basics

Entry ID entry_id9qgm
Deposition date deposition_date2025-03-14
Structure title titleCryo-EM structure of the PlPVC1 central spike, 3-fold symmetrized (C3), in extended state
Keywords keywordsContractile injection system, VIRUS LIKE PARTICLE; VIRUS LIKE PARTICLE
Experimental Method methodELECTRON MICROSCOPY
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3. Official assembly/model SAXS Official SAXS Profiles

This page reads only the latest assembly calculations. Every curve maps to an explicit PDB entry, official biological assembly and coordinate model.

9qgm__assembly_1__model_1

Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

Download this curve (.dat)

9qgm__assembly_1__model_1 | I(q)

10-2 10-1 106 107 108 q (1/Angstrom) I(q)
100 plotted points; both axes use logarithmic scales.

9qgm__assembly_1__model_1 | P(r) · Pending

The new assembly/model P(r) has not been calculated yet This placeholder does not display legacy data r (Angstrom) P(r)
P(r) will be calculated and displayed separately for the same assembly/model.
Rg(Guinier)40.10 Å
Rg (electron density)39.70 Å
Total Rg40.12 Å
Atom count12963
Residues1665
Excluded volume231290 ų
Maximum q0.500 Å⁻¹
Assembly Model Structure unit Oligomeric description Status CRYSOL Actions
1 1 9qgm__assembly_1__model_1 hexameric (6) Success 4.1.3-1-20251215 (887e7ef) View Download
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4. Crystallography and Experiment 4. Crystallography & Experiment

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5. Entities and Polymers Entities & Polymers (2)

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7. Citations (1)