← Back to search

9qgu

ADP-bound wild type Wzm-Wzt from Mycobacterium abscessus in LMNG

Method: ELECTRON MICROSCOPY D_max: 109.8 Å Quality: EXCELLENT

SAXS Profile

P(r) Distribution

▼

1. Structure Basics

entry_id	9qgu
deposition_date	2025-03-14
title	ADP-bound wild type Wzm-Wzt from Mycobacterium abscessus in LMNG
keywords	ABC transporter Type V ABC transporter Arabinogalactan precursor Lipid-linked galactan exporter, MEMBRANE PROTEIN; MEMBRANE PROTEIN
method	ELECTRON MICROSCOPY

▼

Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

▼

2. SAXS Parameters (CRYSOL)

rg_guinier	35.25 Å
rg_electron	34.14 Å
i0	205188000.00
molecular_weight	121440.0 kDa
excluded_volume	154890 Å³
envelope_volume	207270 Å³
shell_volume	50068 Å³
envelope_diameter	118.0 Å
shell_rg	41.65 Å
envelope_rg	33.38 Å
shape_rg	34.15 Å
total_rg	34.71 Å
total_atoms	17334
n_residues	1054
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

▼

3. P(r) Analysis (GNOM)

dmax	109.8 Å
rg_real	35.08 Å
rg_real_error	0.72 Å
i0_real	2.0520e+08
i0_real_error	3.1560e+06
rg_reciprocal	35.18 Å
i0_reciprocal	205200000.0000
total_estimate	0.9025
solution_quality	EXCELLENT a EXCELLENT solution
n_peaks	2
r_peak_primary	48.8 Å
skewness	0.099
kurtosis	-0.558
angular_range	— – 0.2250 Å⁻¹
current_alpha	0.0000
highest_alpha	35310000.0000
n_real_points	46
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.940; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.993; Smooth: 0.915

▶

4. Crystallography & Experiment

▶

5. Entities & Polymer Info (4)

Entity 1 polymer

description	Probable O-antigen/lipopolysaccharide transport integral membrane protein ABC transporter RfbD
formula_weight	35249.2 kDa
src_method	man
entity_count	2

Polymer

type	polypeptide(L)
strand_id	A,B
atom_count	17334

MGSSHHHHHHSQMSSSAGLTSQRPGSKENDMANELIELSSDSRTFKRAWRDLSEGFEHRQLWLQLGWQDIKQRYRRSVLGPFWITIATGSTALAMGILYSQLFKLPLAEHLPYVTIGLIVWNLFNAAILEGSDVFVANEGLIKQLPTPLSVHVYRLVWRQLLLFAHNIIIFLIVVAVYTPHWHFTDLSFIPALVLITLNCLWVSLVFGVLATRYRDISPLLGSLVQLLFFMTPIIWNENMLNQRVGKLATVVQLNPFVHFLAIIRDPLLGLDQQLHHWIIALSITVVGWIVAIVVMRQYRARVPYWV

Source

organism	Mycobacteroides abscessus
ncbi_taxonomy_id	36809
host_organism	Escherichia coli

Entity 2 polymer

description	Probable o-antigen/lipopolysaccharide transport ATP-binding protein ABC transporter RfbE
formula_weight	28764.0 kDa
ec_number	3.6.3.40
src_method	man
entity_count	2

Polymer

type	polypeptide(L)
strand_id	C,D

MVSIQTHQAWVEFPIFDAKSRSLKKAFLGKAGGAIGRNESNVVVIEALRDITLSLKEGDRVGLVGHNGAGKSTLLRLLSGIYEPTRGSSYIKGRVAPVFDLGVGMDPEISGYENIIIRGMFLGQTRKQMQAKVDEIADFTELGEYLSMPLRTYSTGMRVRLAMGVVTSIDPEILLLDEGIGAVDAEFMKKARIRLQQLVERSGMLVFASHSNEFLARLCNTAMWIDHGTIKMSGGIEDVVRAYEGDEAGDHVAQILAEDAHDG

Source

organism	Mycobacteroides abscessus
ncbi_taxonomy_id	36809
host_organism	Escherichia coli

Entity 3 non-polymer

description	Lauryl Maltose Neopentyl Glycol
formula_weight	1005.2 kDa
src_method	syn
entity_count	2

Entity 4 non-polymer

description	ADENOSINE-5'-DIPHOSPHATE
formula_weight	427.2 kDa
src_method	syn
entity_count	2

▶

6. Citations (1)

▶

length_a	1.000 Å
length_b	1.000 Å
length_c	1.000 Å
angle_alpha	90.00 °
angle_beta	90.00 °
angle_gamma	90.00 °
z_pdb	—

space_group	P 1
int_tables_number	1
crystal_system	—

resolution	3.69 Å
resolution_method	—
num_particles	41607

fit	/app/data/saxs_computation/qg/9qgu/9qgu.fit
pddf	/app/data/pr_computation/qg/9qgu/9qgu.pr.out
profile	/app/data/saxs_computation/qg/9qgu/9qgu.dat

ADP-bound wild type Wzm-Wzt from Mycobacterium abscessus in LMNG

SAXS Profile

P(r) Distribution

1. Structure Basics

Download Data

2. SAXS Parameters (CRYSOL)

3. P(r) Analysis (GNOM)

4. Crystallography & Experiment

Unit Cell

Symmetry

EM 3D

5. Entities & Polymer Info (4)

Entity 1 polymer

Polymer

Source

Entity 2 polymer

Polymer

Source

Entity 3 non-polymer

Entity 4 non-polymer

6. Citations (1)

7. Files & Curves (10)

Files (7)

Curves (3)