TMEM55B tandem RING-like domains in complex with RILPL1 C-terminal peptide

entry_id	9qm9
deposition_date	2025-03-22
title	TMEM55B tandem RING-like domains in complex with RILPL1 C-terminal peptide
keywords	complex, PP4P1, lysosome, MEMBRANE PROTEIN; MEMBRANE PROTEIN
method	X-RAY DIFFRACTION

rg_guinier	18.69 Å
rg_electron	18.14 Å
i0	6974880.00
molecular_weight	18557.0 kDa
excluded_volume	23001 ų
envelope_volume	28403 ų
shell_volume	14006 ų
envelope_diameter	74.5 Å
shell_rg	23.13 Å
envelope_rg	18.74 Å
shape_rg	18.23 Å
total_rg	18.73 Å
total_atoms	1270
n_residues	167
n_harmonics	20
q_range	— – 0.5000 Å−1
n_points	101
shell_type	directional
solvent_density	0.3340 e/ų
contrast_shell	0.0300 e/ų
crysol_version	4.1.3

dmax	48.1 Å
rg_real	17.63 Å
rg_real_error	0.07 Å
i0_real	6.6300e+06
i0_real_error	5.3420e+04
rg_reciprocal	18.75 Å
i0_reciprocal	6975000.0000
total_estimate	0.6871
solution_quality	REASONABLE a REASONABLE solution
n_peaks	1
r_peak_primary	20.4 Å
skewness	0.185
kurtosis	-0.564
angular_range	— – 0.4250 Å−1
current_alpha	3.8190
highest_alpha	507900.0000
n_real_points	74
gnom_version	4.1.3
quality_criteria	AN1: 0.002; Oscil: 1.000; Stabil: 0.978; Sysdev: 0.000; Positv: 1.000; Valcen: 0.998; Smooth: 0.000

Unit Cell

length_a	41.514 Å
length_b	48.442 Å
length_c	79.992 Å
angle_alpha	90.00 °
angle_beta	90.00 °
angle_gamma	90.00 °
z_pdb	8

Symmetry

space_group	P 21 21 21
int_tables_number	19
crystal_system	—

Refinement

resolution	1.550 Å
resolution_low	41.440 Å
r_factor	0.2067
r_work	0.2047
r_free	0.2462

Diffraction

temperature

100.0 K

Files (7)

• pr_distribution /app/data/pr_computation/qm/9qm9/pr_distribution.json
• pr_output /app/data/pr_computation/qm/9qm9/9qm9.pr.out
• pr_plot /app/data/visualization/pr_computation/qm/9qm9/9qm9_pr_distribution.png
• saxs_curve_dat /app/data/saxs_computation/qm/9qm9/9qm9.dat
• saxs_fit /app/data/saxs_computation/qm/9qm9/9qm9.fit
• saxs_log /app/data/saxs_computation/qm/9qm9/9qm9.log
• saxs_plot /app/data/visualization/saxs_computation/qm/9qm9/9qm9_saxs_profile.png

Curves (3)

fit	/app/data/saxs_computation/qm/9qm9/9qm9.fit
pddf	/app/data/pr_computation/qm/9qm9/9qm9.pr.out
profile	/app/data/saxs_computation/qm/9qm9/9qm9.dat