SAXSdb — 9qtb

▼

1. Structure Basics

entry_id	9qtb
deposition_date	2025-04-08
title	Apo form of the L protein from Rift Valley Fever Virus
keywords	Rift Valley Fever Virus, RNA dependent RNA polymerase, L-protein, Replication, Transcription, VIRAL PROTEIN; VIRAL PROTEIN
method	ELECTRON MICROSCOPY

▼

Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

▼

2. SAXS Parameters (CRYSOL)

rg_guinier	34.26 Å
rg_electron	33.30 Å
i0	325192000.00
molecular_weight	146520.0 kDa
excluded_volume	184230 Å³
envelope_volume	241770 Å³
shell_volume	58069 Å³
envelope_diameter	106.7 Å
shell_rg	42.07 Å
envelope_rg	32.58 Å
shape_rg	33.31 Å
total_rg	33.93 Å
total_atoms	10289
n_residues	1283
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

▼

3. P(r) Analysis (GNOM)

dmax	103.6 Å
rg_real	34.02 Å
rg_real_error	0.54 Å
i0_real	3.2520e+08
i0_real_error	5.1090e+06
rg_reciprocal	34.17 Å
i0_reciprocal	325200000.0000
total_estimate	0.9005
solution_quality	EXCELLENT a EXCELLENT solution
n_peaks	2
r_peak_primary	47.3 Å
skewness	0.043
kurtosis	-0.556
angular_range	— – 0.2300 Å⁻¹
current_alpha	0.0000
highest_alpha	96040000.0000
n_real_points	47
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.932; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.968; Smooth: 0.939

▶

4. Crystallography & Experiment

▶

5. Entities & Polymer Info (1)

Entity 1 polymer

description	RNA-directed RNA polymerase L
formula_weight	241322.8 kDa
ec_number	2.7.7.48
mutation	D103A
src_method	man
entity_count	1

Polymer

type	polypeptide(L)
strand_id	A
atom_count	10289

MDSILSKQLVDKTGFVRVPIKHFDCTMLTLALPTFDVSKMVDRITIDFNLDDIQGASEIGSTLLPSMSIDVEDMANFVHDFTFGHLADKTDRLLMREFPMMNAGFDHLSPDMIIKTTSGMYNIVEFTTFRGDERGAFQAAMTKLAKYEVPCENRSQGRTVVLYVVSAYRHGVWSNLELEDSEAEEMVYRYRLALSVMDELRTLFPELSSTDEELGKTERELLAMVSSIQINWSVTESVFPPFSREMFDRFRSSPPDSEYITRIVSRCLINSQEKLINSSFFAEGNDKALRFSKNAEECSLAVERALNQYRAEDNLRDLNDHKSTIQLPPWLSYHDVDGKDLCPLQGLDVRGDHPMCNLWREVVTSANLEEIERMHDDAAAELEFALSGVKDRPDERNRYHRVHLNMGSDDSVYIAALGVNGKKHKADTLVQQMRDRSKQPFSPDHDVDHISEFLSACSSDLWATDEDLYSPLSCDKELRLAAQRIHQPSLSERGFNEIITEHYKFMGSRIGSWCQMVSLIGAELSASVKQHVKPNYFVIKRLLGSGIFLLIKPTSSKSHIFVSFAIKRSCWAFDLSTSRVFKPYIDAGDLLVTDFVSYKLSKLTNLCKCVSLMESSFSFWAEAFGIPSWNFVGDLFRSSDSAAMDASYMGKLSLLTLLEDKAATEELQTIARYIIMEGFVSPPEIPKPHKMTSKFPKVLRSELQVYLLNCLCRTIQRIAGEPFILKKKDGSISWGGMFNPFSGRPLLDMQPLISCCYNGYFKNKEEETEPSSLSGMYKKIIELEHLRPQSDAFLGYKDPELPRMHEFSVSYLKEACNHAKLVLRSLYGQNFMEQIDNQIIRELSGLTLERLATLKATSNFNENWYVYKDVADKNYTRDKLLVKMSKYASEGKSLAIQKFEDCMRQIESQGCMHICLFKKQQHGGLREIYVMGAEERIVQSVVETIARSIGKFFASDTLCNPPNKVKIPETHGIRARKQCKGPVWTCATSDDARKWNQGHFVTKFALMLCEFTSPKWWPLIIRGCSMFTRKRMMMNLNYLKILDGHRELDIRDDFVMDLFKAYHGEAEVPWAFKGKTYLETTTGMMQGILHYTSSLLHTIHQEYIRSLSFKIFNLKVAPEMSKSLVCDMMQGSDDSSMLISFPADDEKVLTRCKVAAAICFRMKKELGVYLAIYPSEKSTANTDFVMEYNSEFYFHTQHVRPTIRWIAACCSLPEVETLVARQEEASNLMTSVTEGGGSFSLAAMIQQAQCTLHYMLMGMGVSELFLEYKKAVLKWNDPGLGFFLLDNPYACGLGGFRFNLFKAITRTDLQKLYAFFMKKVKGSAARDWADEDVTIPETCSVSPGGALILSSSLKWGSRKKFQKLRDRLNIPENWIELINENPEVLYRAPRTGPEILLRIAEKVHSPGVVSSLSSGNAVCKVMASAVYFLSATIFEDTGRPEFNFLEDSKYSLLQKMAAYSGFHGFNDMEPEDILFLFPNIEELESLDSIVYNKGEIDIIPRVNIRDATQTRVTIFNEQKTLRTSPEKLVSDKWFGTQKSRIGKTTFLAEWEKLKKIVKWLEDTPEATLAHTPLNNHIQVRNFFARMESKPRTVRITGAPVKKRSGVSKIAMVIRDNFSRMGHLRGVEDLAGFTRSVSAEILKHFLFCILQGPYSESYKLQLIYRVLSSVSNVEIKESDGKTKTNLIGILQRFLDGDHVVPIIEEMGAGTVGGFIKRQQSKVVQNKVVYYGVGIWRGFMDGYQVHLEIENDIGQPPRLRNVTTNCQSSPWDLSIPIRQWAEDMGVTNNQDYSSKSSRGARYWMHSFRMQGPSKPFGCPVYIIKGDMSDVIRLRKEEVEMKVRGSTLNLYTKHHSHQDLHILSYTASDNDLSPGIFKSISDEGVAQALQLFEREPSNCWVRCESVAPKFISAILEICEGKRQIKGINRTRLSEIVRICSESSLRSKVGSMFSFVANVEEAHDVDYDALMDLMIEDAKNNAFSHVVDCIELDVSGPYEMESFDTSDVNLFGPAHYKDISSLSMIAHPLMDKFVDYAISKMGRASVRKVLETGRCSSKDYDLSKVLFRTLQRPEESIRIDDLELYEETDVADDMLGGSAWSHPQFEKGGGSGGGSGGSAWSHPQFEK

Source

organism	Rift valley fever virus (STRAIN ZH-548 M12)
ncbi_taxonomy_id	11589
host_organism	Spodoptera aff. frugiperda 1 BOLD-2017

▶

6. Citations (1)

▶

length_a	1.000 Å
length_b	1.000 Å
length_c	1.000 Å
angle_alpha	90.00 °
angle_beta	90.00 °
angle_gamma	90.00 °
z_pdb	—

space_group	P 1
int_tables_number	1
crystal_system	—

resolution	3.50 Å
resolution_method	—
num_particles	185424

fit	/app/data/saxs_computation/qt/9qtb/9qtb.fit
pddf	/app/data/pr_computation/qt/9qtb/9qtb.pr.out
profile	/app/data/saxs_computation/qt/9qtb/9qtb.dat

Apo form of the L protein from Rift Valley Fever Virus

SAXS Profile

P(r) Distribution

1. Structure Basics

Download Data

2. SAXS Parameters (CRYSOL)

3. P(r) Analysis (GNOM)

4. Crystallography & Experiment

Unit Cell

Symmetry

EM 3D

5. Entities & Polymer Info (1)

Entity 1 polymer

Polymer

Source

6. Citations (1)

7. Files & Curves (10)

Files (7)

Curves (3)