9qwl
Hemolysin-coregulated-protein-1 (Hcp1) from Bacteroides fragilis strain NCTC9343
SAXS Profile
P(r) Distribution
1. Structure Basics
| entry_id | 9qwl |
| deposition_date | 2025-04-14 |
| last_revision | 2026-04-29 |
| title | Hemolysin-coregulated-protein-1 (Hcp1) from Bacteroides fragilis strain NCTC9343 |
| keywords | Type VI Secretion System (T6SS), STRUCTURAL HEMOLYSIN-COREGULATED-PROTEIN, Hcp hetero-hexamers, human gut microbiome, CELL INVASION; CELL INVASION |
| method | X-RAY DIFFRACTION |
Download Data
2. SAXS Parameters (CRYSOL)
| rg_guinier | 17.75 Å |
| rg_electron | 16.63 Å |
| i0 | 4438710.00 |
| molecular_weight | 14764.0 kDa |
| excluded_volume | 18313 ų |
| envelope_volume | 22216 ų |
| shell_volume | 12291 ų |
| envelope_diameter | 62.3 Å |
| shell_rg | 21.50 Å |
| envelope_rg | 17.20 Å |
| shape_rg | 16.58 Å |
| total_rg | 17.68 Å |
| total_atoms | 2034 |
| n_residues | 126 |
| n_harmonics | 20 |
| q_range | — – 0.5000 Å−1 |
| n_points | 101 |
| shell_type | directional |
| solvent_density | 0.3340 e/ų |
| contrast_shell | 0.0300 e/ų |
| crysol_version | 4.1.3 |
3. P(r) Analysis (GNOM)
| dmax | 61.7 Å |
| rg_real | 17.79 Å |
| rg_real_error | 0.46 Å |
| i0_real | 4.4390e+06 |
| i0_real_error | 5.7040e+04 |
| rg_reciprocal | 17.79 Å |
| i0_reciprocal | 4439000.0000 |
| total_estimate | 0.7824 |
| solution_quality | GOOD a GOOD solution |
| n_peaks | 3 |
| r_peak_primary | 18.9 Å |
| skewness | 0.397 |
| kurtosis | -0.192 |
| angular_range | — – 0.4500 Å−1 |
| current_alpha | 0.0000 |
| highest_alpha | 532600.0000 |
| n_real_points | 76 |
| gnom_version | 4.1.3 |
| quality_criteria | AN1: 0.000; Oscil: 0.752; Stabil: 0.998; Sysdev: 1.000; Positv: 1.000; Valcen: 0.916; Smooth: 0.000 |