9qy1
Endo180 (uPARAP) carbohydrate-recognition domain 2 with bound methyl fucoside
SAXS Profile
P(r) Distribution
1. Structure Basics
| entry_id | 9qy1 |
| deposition_date | 2025-04-16 |
| last_revision | 2025-05-28 |
| title | Endo180 (uPARAP) carbohydrate-recognition domain 2 with bound methyl fucoside |
| keywords | Lectin Endocytosis Endothelial cells, SUGAR BINDING PROTEIN; SUGAR BINDING PROTEIN |
| method | X-RAY DIFFRACTION |
Download Data
2. SAXS Parameters (CRYSOL)
| rg_guinier | 15.05 Å |
| rg_electron | 13.84 Å |
| i0 | 4675250.00 |
| molecular_weight | 14997.0 kDa |
| excluded_volume | 18542 ų |
| envelope_volume | 20420 ų |
| shell_volume | 12427 ų |
| envelope_diameter | 53.9 Å |
| shell_rg | 19.90 Å |
| envelope_rg | 14.41 Å |
| shape_rg | 13.80 Å |
| total_rg | 15.16 Å |
| total_atoms | 1050 |
| n_residues | 126 |
| n_harmonics | 20 |
| q_range | — – 0.5000 Å−1 |
| n_points | 101 |
| shell_type | directional |
| solvent_density | 0.3340 e/ų |
| contrast_shell | 0.0300 e/ų |
| crysol_version | 4.1.3 |
3. P(r) Analysis (GNOM)
| dmax | 54.1 Å |
| rg_real | 14.98 Å |
| rg_real_error | 0.45 Å |
| i0_real | 4.6750e+06 |
| i0_real_error | 5.7010e+04 |
| rg_reciprocal | 14.98 Å |
| i0_reciprocal | 4675000.0000 |
| total_estimate | 0.7543 |
| solution_quality | GOOD a GOOD solution |
| n_peaks | 3 |
| r_peak_primary | 19.9 Å |
| skewness | 0.267 |
| kurtosis | -0.046 |
| angular_range | — – 0.5000 Å−1 |
| current_alpha | 0.0000 |
| highest_alpha | 991400.0000 |
| n_real_points | 80 |
| gnom_version | 4.1.3 |
| quality_criteria | AN1: 0.000; Oscil: 0.610; Stabil: 0.999; Sysdev: 1.000; Positv: 1.000; Valcen: 0.974; Smooth: 0.000 |