SAXSdb — 9qy3

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1. Protein Identity and Related Structures Protein Identity & Related Structures

Coat Protein (CP)

Plum pox virus

State in the Current Structure

Assembly	Physical composition	Protein state	Molecular copy count	Associated components	Data consistency
1	Protein–RNA	Homooligomer	Protein 45 RNA 1	RNA × 1	Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence

UniProt name	B6C7W4_9POTV
Isoform	—
PDB entities	1
Chains and sequence ranges	Author chain A； PDBConstruct 1–330； UniProt 1–330 Author chain B； PDBConstruct 1–330； UniProt 1–330 Author chain C； PDBConstruct 1–330； UniProt 1–330 Author chain D； PDBConstruct 1–330； UniProt 1–330 Author chain E； PDBConstruct 1–330； UniProt 1–330 Author chain F； PDBConstruct 1–330； UniProt 1–330 Author chain G； PDBConstruct 1–330； UniProt 1–330 Author chain H； PDBConstruct 1–330； UniProt 1–330 Author chain I； PDBConstruct 1–330； UniProt 1–330 Author chain J； PDBConstruct 1–330； UniProt 1–330 Author chain K； PDBConstruct 1–330； UniProt 1–330 Author chain L； PDBConstruct 1–330； UniProt 1–330 Author chain M； PDBConstruct 1–330； UniProt 1–330 Author chain N； PDBConstruct 1–330； UniProt 1–330 Author chain O； PDBConstruct 1–330； UniProt 1–330 Author chain P； PDBConstruct 1–330； UniProt 1–330 Author chain Q； PDBConstruct 1–330； UniProt 1–330 Author chain R； PDBConstruct 1–330； UniProt 1–330 Author chain S； PDBConstruct 1–330； UniProt 1–330 Author chain T； PDBConstruct 1–330； UniProt 1–330 Author chain U； PDBConstruct 1–330； UniProt 1–330 Author chain V； PDBConstruct 1–330； UniProt 1–330 Author chain W； PDBConstruct 1–330； UniProt 1–330 Author chain X； PDBConstruct 1–330； UniProt 1–330 Author chain Y； PDBConstruct 1–330； UniProt 1–330 Author chain Z； PDBConstruct 1–330； UniProt 1–330 Author chain a； PDBConstruct 1–330； UniProt 1–330 Author chain b； PDBConstruct 1–330； UniProt 1–330 Author chain c； PDBConstruct 1–330； UniProt 1–330 Author chain d； PDBConstruct 1–330； UniProt 1–330 Author chain e； PDBConstruct 1–330； UniProt 1–330 Author chain f； PDBConstruct 1–330； UniProt 1–330 Author chain g； PDBConstruct 1–330； UniProt 1–330 Author chain h； PDBConstruct 1–330； UniProt 1–330 Author chain i； PDBConstruct 1–330； UniProt 1–330 Author chain j； PDBConstruct 1–330； UniProt 1–330 Author chain k； PDBConstruct 1–330； UniProt 1–330 Author chain l； PDBConstruct 1–330； UniProt 1–330 Author chain m； PDBConstruct 1–330； UniProt 1–330 Author chain n； PDBConstruct 1–330； UniProt 1–330 Author chain o； PDBConstruct 1–330； UniProt 1–330 Author chain p； PDBConstruct 1–330； UniProt 1–330 Author chain q； PDBConstruct 1–330； UniProt 1–330 Author chain r； PDBConstruct 1–330； UniProt 1–330 Author chain s； PDBConstruct 1–330； UniProt 1–330

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

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2. Structure Basics 2. Structure Basics

Entry ID entry_id	9qy3
Deposition date deposition_date	2025-04-16
Structure title title	Structure of the Plum Pox Virus (PPV)
Keywords keywords	Potyvirus, Plum Pox Virus, PPV, VIRUS; VIRUS
Experimental Method method	ELECTRON MICROSCOPY

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3. Official assembly/model SAXS Official SAXS Profiles

This page reads only the latest assembly calculations. Every curve maps to an explicit PDB entry, official biological assembly and coordinate model.

9qy3__assembly_1__model_1

Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

Download this curve (.dat)

9qy3__assembly_1__model_1 | I(q)

100 plotted points; both axes use logarithmic scales.

9qy3__assembly_1__model_1 | P(r) · Pending

P(r) will be calculated and displayed separately for the same assembly/model.

Rg（Guinier）	71.20 Å
Rg (electron density)	71.61 Å
Total Rg	71.59 Å
Atom count	77940
Residues	9315
Excluded volume	1353400 Å³
Maximum q	0.500 Å⁻¹

Assembly	Model	Structure unit	Oligomeric description	Status	CRYSOL	Actions
1	1	`9qy3__assembly_1__model_1`	46-meric （46）	Success	4.1.3-1-20251215 (887e7ef)	View Download

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4. Crystallography and Experiment 4. Crystallography & Experiment

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5. Entities and Polymers Entities & Polymers (2)

Entity 1 Entity 1 polymer

Description description	Coat Protein (CP)
Molecular weight formula_weight	36552.0 kDa
Source method src_method	man
Copy count entity_count	45

Polymer Polymer

Polymer type type	polypeptide(L)
Chain IDs strand_id	A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,a,b,c,d,e,f,g,h,i,j,k,l,m,n,o,p,q,r,s
Atom count atom_count	77940

ADEREDDEEVDAGGPTVVTAPAATVATTQPAPVIQPAPQTTAPMFNPIFTPATTQPAVRPVPPISGTKPRSFGVYGNEDASPSTSNTLVNTGRDRDVDAGSIGTFTVPRLKTMTSKLSLPKVKGKAIMNLNHLAHYSPAQVDLSNTRAPQSCFQTWYEGVKRDYDVTDEEMSIILNGLMVWCIENGTSPNINGMWVMMDGETQVEYPIKPLLDHAKPTFRQIMAHFSNVAEAYIEKRNYEKAYMPRYGIQRNLTDYSLARYAFDFYEMTSTTPVRAREAHIQMKAAALRNVQNRLFGLDGNVGTQEEDTERHTAGDVNRNMHNLLGVRGV

Source Source

Source organism organism	Plum pox virus
NCBI taxonomy ID ncbi_taxonomy_id	12211
Host organism host_organism	Plum pox virus

Entity 2 Entity 2 polymer

Description description	RNA
Molecular weight formula_weight	191003.6 kDa
Source method src_method	man
Copy count entity_count	1

Polymer Polymer

Polymer type type	polyribonucleotide
Chain IDs strand_id	t

UUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUU

Source Source

Source organism organism	Plum pox virus
NCBI taxonomy ID ncbi_taxonomy_id	12211
Host organism host_organism	Plum pox virus

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Unit-cell length a length_a	1.000 Å
Unit-cell length b length_b	1.000 Å
Unit-cell length c length_c	1.000 Å
Unit-cell angle α angle_alpha	90.00 °
Unit-cell angle β angle_beta	90.00 °
Unit-cell angle γ angle_gamma	90.00 °
Molecules per unit cell Z z_pdb	—

Space group space_group	P 1
Space-group number int_tables_number	1
Crystal system crystal_system	—

Resolution resolution	2.900 Å
Low-resolution limit resolution_low	— Å
R factor r_factor	—
R_work r_work	—
R_free r_free	—

Resolution resolution	2.90 Å
Resolution测定Method resolution_method	—
颗粒数 num_particles	406769

Structure of the Plum Pox Virus (PPV)

1. Protein Identity and Related Structures Protein Identity & Related Structures

Coat Protein (CP)

State in the Current Structure

Other States of the Same Protein in the Database

2. Structure Basics 2. Structure Basics

3. Official assembly/model SAXS Official SAXS Profiles

9qy3__assembly_1__model_1

9qy3__assembly_1__model_1 | I(q)

9qy3__assembly_1__model_1 | P(r) · Pending

4. Crystallography and Experiment 4. Crystallography & Experiment

Unit cell Unit Cell

Symmetry Symmetry

Refinement Refinement

冷冻电镜 EM 3D

5. Entities and Polymers Entities & Polymers (2)

Entity 1 Entity 1 polymer

Polymer Polymer

Source Source

Entity 2 Entity 2 polymer

Polymer Polymer

Source Source

7. Citations (1)

Structure of the Plum Pox Virus (PPV)

1. Protein Identity and Related Structures Protein Identity & Related Structures

Coat Protein (CP)

State in the Current Structure

Other States of the Same Protein in the Database

Monomer

Homodimer

Homotetramer

Other homooligomers

Heteromeric or nucleic-acid complex

2. Structure Basics 2. Structure Basics

3. Official assembly/model SAXS Official SAXS Profiles

9qy3__assembly_1__model_1

9qy3__assembly_1__model_1 | I(q)

9qy3__assembly_1__model_1 | P(r) · Pending

4. Crystallography and Experiment 4. Crystallography & Experiment

Unit cell Unit Cell

Symmetry Symmetry

Refinement Refinement

冷冻电镜 EM 3D

5. Entities and Polymers Entities & Polymers (2)

Entity 1 Entity 1 polymer

Polymer Polymer

Source Source

Entity 2 Entity 2 polymer

Polymer Polymer

Source Source

7. Citations (1)