← Back to search

9qzc

Proximal A-C linker of Tetrahymena centriole, one repeating unit

Method: ELECTRON MICROSCOPY D_max: 295.6 Å Quality: GOOD

SAXS Profile

P(r) Distribution

▼

1. Structure Basics

entry_id	9qzc
deposition_date	2025-04-22
title	Proximal A-C linker of Tetrahymena centriole, one repeating unit
keywords	centriole, basal body, centrosome, STRUCTURAL PROTEIN; STRUCTURAL PROTEIN
method	ELECTRON MICROSCOPY

▼

Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

▼

2. SAXS Parameters (CRYSOL)

rg_guinier	— Å
rg_electron	117.90 Å
i0	2026400000.00
molecular_weight	312920.0 kDa
excluded_volume	361810 Å³
envelope_volume	1147300 Å³
shell_volume	105540 Å³
envelope_diameter	456.7 Å
shell_rg	67.24 Å
envelope_rg	112.80 Å
shape_rg	117.90 Å
total_rg	117.10 Å
total_atoms	22355
n_residues	4492
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

▼

3. P(r) Analysis (GNOM)

dmax	295.6 Å
rg_real	103.40 Å
rg_real_error	1.74 Å
i0_real	1.9190e+09
i0_real_error	4.5920e+07
rg_reciprocal	95.83 Å
i0_reciprocal	1915000000.0000
total_estimate	0.8916
solution_quality	GOOD a GOOD solution
n_peaks	1
r_peak_primary	68.2 Å
skewness	0.348
kurtosis	-0.876
angular_range	— – 0.0650 Å⁻¹
current_alpha	0.7585
highest_alpha	88460000.0000
n_real_points	14
gnom_version	4.1.3
quality_criteria	AN1: 0.047; Oscil: 0.934; Stabil: 0.966; Sysdev: 1.000; Positv: 1.000; Valcen: 0.890; Smooth: 0.000

▶

4. Crystallography & Experiment

▶

5. Entities & Polymer Info (15)

Entity 1 polymer

description	WD repeat WRAP73-like protein, putative
formula_weight	51977.5 kDa
src_method	nat
entity_count	1

Polymer

type	polypeptide(L)
strand_id	i
atom_count	22355

MQFSNIIQGACSAIFSQDSSLIAISNGSKILIKDINQELINRNVYSFQDIITHMEFSPDNQLILVVQSNSNTVEVKNFNDEQWICKIVDQACGLLHAVWAPDSRSIITFSDFQMKATIYSLTDKQQYLIKNPKYTDKGLSFSSDGKFMALAERRDIKDYIGIYYTKDWKLVNHFQVDTMDLVDIQWSKDDGSILVWDSSINYKFLVYHPSNGLIQRIQPYEYALGIKCVELSNTPNFVAIGSYDEKIRLVNTLTWKIITELEHKANIKEYSNAVVYREQNSTLLNAQHLVDRTTTQFVIDESINKLPGAKQSTDKSQQSGVTDVTFSFNANYIASKSASFPNAVFIWEVSLLELRYIILLQNPVKGFLWSHNSNNLIIYAGSNKIYFWSLDGASVCELPQYGKQFSVNKVLWNKNSKCLVLIDRRDAIIGYPPIDLEYNEEHEEEQREEYEN

Entity 2 polymer

description	Centrosomal protein, putative
formula_weight	44594.3 kDa
src_method	nat
entity_count	2

Polymer

type	polypeptide(L)
strand_id	q,y

MRNSLFNERKYLLLRKKLDELHYTQPLQIESAELVDKLLNDLLKTSEGFQKLKNKNQELEQQLCIIEKSLNPLKAENQKLMRENNNLQSEIILSSENAQQKYNLLTVRLKQLQTEAQDLKFVLQKSEERCLKLQDENSALKNKLDTISAKVYLPSCEKGFEDLPKSYVNSNYKSLTNMSIARDNREGFNVLPQDNSNQKNSNSSKEYDIQRLQNISDSKQNYQDGYSNLISTIKELQEQLRNCKEQVHTQEAQLSYLKMQVSNRDGEINRLKTRLDVGGINMVKLVQDYNYMQQNDKIKLLNHQIDYLNKENTEMDSILRSKPYIALSQANVKLLAENSSYLEKLRKTEEILEEYERRFQIQQQSAKYTKQLSQNALVDN

Entity 3 polymer

description	Rab-GAP TBC domain-containing protein
formula_weight	110098.6 kDa
src_method	nat
entity_count	1

Polymer

type	polypeptide(L)
strand_id	7

MKISQQQKLSLVNRTGKLEAKKESGQDGLCDVINFKTLKKGNWHSFKLQFDSKGATYGCLDQAGNVTLFYLDKNRYTNVDVQVDSSNLTFIEKPTGYLAVSNADCSISIYSILSGKLIQQLKWHTFKIKKLQVNHMSGYLLSVSSDNCTIWNINTYERRKSFFVKNTRYAQGCLTPAGEHLITLSQNGLVECHNTDTLKIEKKEEIGLKLKQAHLDISAEGVYIAICGDSNYCLIGRLDCQQGFDFELYELPNNIQSVKKIKFIRNSLLTLLGSDEKIYVLSAENNMEIVLCFELPSRKGIVDYDLNIDAKYLVVISTLGEKYVYDFHQLIANQKKHQQDVTMKKGSFSRQTLTRMDLDELKQTLFYQTKENQMKYANSKKQKHEGKINGETNMIMLDRVGGATPEVEIFVNGKRQDQYDIQNQKSSFLDREKLREFLSRFGYFPEKHRVVVWNYLLKLPSNYEAFDNLARKGLHPNYLNLKSTFPIQSDKLYYRTQRILSCLAHYCPVFAQLDYMPAFVFPFVKLLGTNEAFCFEVILSFLVQWGQFFFEFAPNPPVSYLKAFMELLEYHEPQLHAQLNQNIPHTQLFNTIWSSLQVVLTDVLKREDWLCFIDFLVAHSEKPDLLLHILVAYFTYFKRHIISFTTGSQLLRFFQQDHQIRIQNLLQDALEYRNRTPPRIPQAVVLQDNLPLTSEQYPIFNFYPKFSLDQHKEIREQIIQEELKATEKKRTLKELNTLQQQLNDLEKLYEEKQDALMRHERERREIITYEQEMRYSKLVDAERQVREERLQQMKKLEEESRKAIQIAENSRKADLDFIDQELQKKRANDNKFIASKMEEEAILNLELKTAGRINEVLNTKTKDQNIQSITLQAEIAQKRLDMKYKQMEQQIDQQIEEENIRQDHILQRKALQREIEDDVSKQREIKGQLLAEEFERE

Entity 4 polymer

description	TBC1 domain family member 31
formula_weight	141643.9 kDa
src_method	nat
entity_count	2

Polymer

type	polypeptide(L)
strand_id	AE,AU

MNNIHTSTHVSTYFNEALVDRIDTQKYLKSNGKIKKVVSDPDNHYTAAIDDSGNITVIVHKLNRFVSIKPSSPATHLVFIRNGNLLVAQQNGHISQYLASNGKLTSVIKHHNSKLLALEYNPVTKQILTIANDQCTLWDAQSFNKIKTLFAKASYFATGSLTPNGQSLITSFQDGNVYVWNLNNFEVTAKSEVEENMKNQKISVSADSSRFVIGGSTAYLYYCDISHSPLCISSFALPSGSTSVKKIKFTHGNYLGIITDNQVFYAIDSSTNQIALEFRLPKNKGITDFDINPNNLEILIVSGNGEIFKYDLQKLFIMEMNQQQRLLERGIESSLVYNVLKPGNQNHSLKFESHVDFVSHGKENVIINGESKLVNDPDDLMKANTQRETNIIQLCTFPKHTLEKMFKSALINVNSLPNMSVHKLRQFLQKHKVYPDKHRAFIYKQLLELPLNVDNFATLVQKGLYPSFKDLYRKYPISDSKLYQKMQTILSCLANFCDLFGESDQFIQIAFPFVKLFGQEELLAFEIVLCFAHQILQNYFVDFPHPPLDLLQNIDEIIKYNDPILHQHLKQHNFKFVDYIWPFLSGFFTSALDKESWLQLIDYLITYNDTPELFMFITAAFIIYFKHPLMKLKSKDELEIFISRQNPVSVNHIIESGFSLLKRTPIDKIFVKFSKILPLSKTSYNQFTNYNVFNVAHSRLTRQQETEAEAKLEESKHKIRQMQSLTDQILSVEQRYKEKQENLIRSEQIRREEVIYNAEQKLSRQMKLEESIKQTRLQQLNKIQTLTRANLQAQEELRQKELDLLEAELQYQQQADGQQMQNRKEEIQILEMEAQAAARLRQVMELREKEDRQRMVRMDMDIHRQQEEDRDNALIQQWRVEDTEMRLRRETLKQKKLQDLYKYEEENEKKLIEAKMLETEILKEQQMRDIERERKLRQIAEQELDQNERYAEYVKQLEQEQLKTQIHKLQETLNHHRQKALNFSQARLNQAEEEKNRLLNEIQIHKNMLSAKQKTLQTGEIESQIAQKRREAEQSIIEHEKKLQSILLDIENEKRLMYELQSQILQREKDIKEQEGFYDVLKENEQRAINENRYQTALQQQRFEEDLNRQTMQKSYQQQQRLQEQMQLREQQLIQETDQMRETIQQENMKRLEEAVNNNTLLRNTNSNNQSQDYSPANNFQRNHYKMPSEINEEEGEQDEEQ

Entity 5 polymer

description	POC1 centriolar protein homolog
formula_weight	71408.1 kDa
src_method	nat
entity_count	1

Polymer

type	polypeptide(L)
strand_id	AM

MKKTTIASSAVASQKQTQSKLGNTSSKITEQQTTHDPALSRSFRGHEDIITCADFDPKMRQVASCSKDSIVYVWNFKPQQRPFKFVGHKGAVYCVKYSPDGETIASCGQDRQIRLWQNTVQSKCSIIKAHCGAIRSMSFSADGGYLLSSSDDKTLKLWRLQDKKFMCSFAGHKNWVRSGVISPDMRLVASGSDDKTVMLWDLNFQKIVSKYSTLDDNVKISQINSYSDHMDTVSQVLFHPDGTCLISSSFDHKIKITDIRSNKLIQHYNAHDAQVNSISIHPTGYFLASAGSDSKIKIWDLRQGRQIYTLYSNDKDITTVQFNQSGDYFATGGSQNLCMVWKTNFDQNIQNIEQVQRSTVRQNDVEYSSGGLYAQTLFKTNKTASLSPSKKTISIIPPQQLQDTFNNRGDDELNNGRVHENKQSNSPTFSQQQQQQQLNLSENQYPGLEIVGNQFNLQQSTLSNNNNQNNLIKSQNDSIVSNKNAIPFHPSSEFQQSAVQQQFSQQPKLVVNNGTATYPSNFVPKVEEENIMTEAIAASMQQIYSRLDTMFQYMTNLENRVVQSEQLQKSFVSQNHQNTLDPKQQTMNFGYSNIQDHSLSASLNDRNVVNIFQAGALANTGSIEASLINKQQEE

Entity 6 polymer

description	Unknown Protein Chain
formula_weight	2741.4 kDa
src_method	nat
entity_count	1

Polymer

type	polypeptide(L)
strand_id	Ac

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX

Entity 7 polymer

description	Unknown Protein Chain
formula_weight	13039.1 kDa
src_method	nat
entity_count	1

Polymer

type	polypeptide(L)
strand_id	As

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX

Entity 8 polymer

description	SWIM-type domain-containing protein
formula_weight	26274.4 kDa
src_method	nat
entity_count	2

Polymer

type	polypeptide(L)
strand_id	Az,A7

MFSKAPRPASCKPLSSKEVISIQKGATDLGKALFYAIKHQDYKHASELVALGAPIERCYEVEKDVYRTTCSLLVGMICTARIAKGHREISYRIPDRILDTFIQLGVDLRCHCSNKFEHRCPLFVALKILNVQNEQELFKDKNQIVQKLIINGATIKNHIQPHKTFHNIPHFDIEGIRSYLISKSQLASVKKSGSLQTATSNYHDNCKNPLPYKHNSEFSKTGYNFTFQYK

Entity 9 polymer

description	Unknown Protein Chain
formula_weight	12868.9 kDa
src_method	nat
entity_count	1

Polymer

type	polypeptide(L)
strand_id	Bw

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX

Entity 10 polymer

description	Unknown Protein Chain
formula_weight	13975.2 kDa
src_method	nat
entity_count	1

Polymer

type	polypeptide(L)
strand_id	B4

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX

Entity 11 polymer

description	Unknown Protein Chain
formula_weight	14230.5 kDa
src_method	nat
entity_count	1

Polymer

type	polypeptide(L)
strand_id	CA

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX

Entity 12 polymer

description	Unknown Protein Chain
formula_weight	13719.9 kDa
src_method	nat
entity_count	1

Polymer

type	polypeptide(L)
strand_id	CH

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX

Entity 13 polymer

description	Unknown Protein Chain
formula_weight	8954.0 kDa
src_method	nat
entity_count	1

Polymer

type	polypeptide(L)
strand_id	CO

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX

Entity 14 polymer

description	Unknown Protein Chain
formula_weight	10826.3 kDa
src_method	nat
entity_count	1

Polymer

type	polypeptide(L)
strand_id	CV

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX

Entity 15 polymer

description	Unknown Protein Chain
formula_weight	8698.7 kDa
src_method	nat
entity_count	1

Polymer

type	polypeptide(L)
strand_id	Cc

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX

▶

6. Citations (1)

▶

resolution	3.80 Å
resolution_method	—
num_particles	155485

fit	/app/data/saxs_computation/qz/9qzc/9qzc.fit
pddf	/app/data/pr_computation/qz/9qzc/9qzc.pr.out
profile	/app/data/saxs_computation/qz/9qzc/9qzc.dat

Proximal A-C linker of Tetrahymena centriole, one repeating unit

SAXS Profile

P(r) Distribution

1. Structure Basics

Download Data

2. SAXS Parameters (CRYSOL)

3. P(r) Analysis (GNOM)

4. Crystallography & Experiment

EM 3D

5. Entities & Polymer Info (15)

Entity 1 polymer

Polymer

Entity 2 polymer

Polymer

Entity 3 polymer

Polymer

Entity 4 polymer

Polymer

Entity 5 polymer

Polymer

Entity 6 polymer

Polymer

Entity 7 polymer

Polymer

Entity 8 polymer

Polymer

Entity 9 polymer

Polymer

Entity 10 polymer

Polymer

Entity 11 polymer

Polymer

Entity 12 polymer

Polymer

Entity 13 polymer

Polymer

Entity 14 polymer

Polymer

Entity 15 polymer

Polymer

6. Citations (1)

7. Files & Curves (10)

Files (7)

Curves (3)