SadB of Pseudomonas aeruginosa

Method: X-RAY DIFFRACTION D_max: 142.9 Å Quality: GOOD

SAXS Profile

P(r) Distribution

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1. Structure Basics

entry_id	9qzk
deposition_date	2025-04-23
last_revision	2025-05-28
title	SadB of Pseudomonas aeruginosa
keywords	Biofilm, Pseudomonas aeruginosa, STRUCTURAL PROTEIN; STRUCTURAL PROTEIN
method	X-RAY DIFFRACTION

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Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

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2. SAXS Parameters (CRYSOL)

rg_guinier	44.78 Å
rg_electron	44.25 Å
i0	570854000.00
molecular_weight	201160.0 kDa
excluded_volume	254160 Å³
envelope_volume	354150 Å³
shell_volume	66990 Å³
envelope_diameter	147.2 Å
shell_rg	48.38 Å
envelope_rg	43.65 Å
shape_rg	44.25 Å
total_rg	44.46 Å
total_atoms	14188
n_residues	1828
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

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3. P(r) Analysis (GNOM)

dmax	142.9 Å
rg_real	44.56 Å
rg_real_error	0.99 Å
i0_real	5.7090e+08
i0_real_error	1.0130e+07
rg_reciprocal	44.78 Å
i0_reciprocal	571000000.0000
total_estimate	0.8872
solution_quality	GOOD a GOOD solution
n_peaks	1
r_peak_primary	65.3 Å
skewness	0.064
kurtosis	-0.549
angular_range	— – 0.1750 Å⁻¹
current_alpha	0.0000
highest_alpha	86870000.0000
n_real_points	36
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.883; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.999; Smooth: 0.882

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4. Crystallography & Experiment

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5. Entities & Polymer Info (1)

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6. Citations (1)

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length_a	113.727 Å
length_b	162.278 Å
length_c	238.237 Å
angle_alpha	90.00 °
angle_beta	90.00 °
angle_gamma	90.00 °
z_pdb	16

space_group	P 21 21 21
int_tables_number	19
crystal_system	—

resolution	3.160 Å
resolution_low	49.250 Å
r_factor	0.2234
r_work	0.2222
r_free	0.2647

description	HDOD domain-containing protein
formula_weight	50368.8 kDa
src_method	man
entity_count	4

type	polypeptide(L)
strand_id	A,B,C,D
atom_count	14188

SadB of Pseudomonas aeruginosa

SAXS Profile

P(r) Distribution

1. Structure Basics

Download Data

2. SAXS Parameters (CRYSOL)

3. P(r) Analysis (GNOM)

4. Crystallography & Experiment

Unit Cell

Symmetry

Refinement

Diffraction

5. Entities & Polymer Info (1)

Entity 1 polymer

Polymer

Source

6. Citations (1)

7. Files & Curves (10)

Files (7)

Curves (3)

organism	Pseudomonas aeruginosa
ncbi_taxonomy_id	287
host_organism	Escherichia coli

fit	/app/data/saxs_computation/qz/9qzk/9qzk.fit
pddf	/app/data/pr_computation/qz/9qzk/9qzk.pr.out
profile	/app/data/saxs_computation/qz/9qzk/9qzk.dat