9r4z
Murine AA amyloid fibril morphology III (AA III)
SAXS Profile
P(r) Distribution
1. Structure Basics
| entry_id | 9r4z |
| deposition_date | 2025-05-08 |
| title | Murine AA amyloid fibril morphology III (AA III) |
| keywords | Amyloid fibril, AA amyloidosis, systemic amyloidosis, AApoAII amyloidosis, misfolfing disease, protein aggregation, PROTEIN FIBRIL; PROTEIN FIBRIL |
| method | ELECTRON MICROSCOPY |
Download Data
2. SAXS Parameters (CRYSOL)
| rg_guinier | 31.52 Å |
| rg_electron | 30.60 Å |
| i0 | 143644000.00 |
| molecular_weight | 92621.0 kDa |
| excluded_volume | 113830 ų |
| envelope_volume | 133670 ų |
| shell_volume | 37072 ų |
| envelope_diameter | 112.6 Å |
| shell_rg | 37.00 Å |
| envelope_rg | 30.91 Å |
| shape_rg | 30.60 Å |
| total_rg | 31.07 Å |
| total_atoms | 6588 |
| n_residues | 828 |
| n_harmonics | 20 |
| q_range | — – 0.5000 Å−1 |
| n_points | 101 |
| shell_type | directional |
| solvent_density | 0.3340 e/ų |
| contrast_shell | 0.0300 e/ų |
| crysol_version | 4.1.3 |
3. P(r) Analysis (GNOM)
| dmax | 108.1 Å |
| rg_real | 31.68 Å |
| rg_real_error | 0.87 Å |
| i0_real | 1.4360e+08 |
| i0_real_error | 2.2720e+06 |
| rg_reciprocal | 31.61 Å |
| i0_reciprocal | 143600000.0000 |
| total_estimate | 0.6519 |
| solution_quality | REASONABLE a REASONABLE solution |
| n_peaks | 1 |
| r_peak_primary | 32.4 Å |
| skewness | 0.466 |
| kurtosis | -0.302 |
| angular_range | — – 0.2500 Å−1 |
| current_alpha | 0.0000 |
| highest_alpha | 56360000.0000 |
| n_real_points | 51 |
| gnom_version | 4.1.3 |
| quality_criteria | AN1: 0.000; Oscil: 0.805; Stabil: 1.000; Sysdev: 0.062; Positv: 1.000; Valcen: 0.929; Smooth: 0.940 |