9r6v
Crystal structure of the DOC domain of the E3 ligase HECTD3
SAXS Profile
P(r) Distribution
1. Structure Basics
| entry_id | 9r6v |
| deposition_date | 2025-05-13 |
| title | Crystal structure of the DOC domain of the E3 ligase HECTD3 |
| keywords | E3-ligase, ubiquitin, ubiquitination, HECT-ligase, LIGASE; LIGASE |
| method | X-RAY DIFFRACTION |
Download Data
2. SAXS Parameters (CRYSOL)
| rg_guinier | 20.97 Å |
| rg_electron | 19.80 Å |
| i0 | 17335600.00 |
| molecular_weight | 30946.0 kDa |
| excluded_volume | 38539 ų |
| envelope_volume | 45594 ų |
| shell_volume | 19482 ų |
| envelope_diameter | 70.9 Å |
| shell_rg | 25.78 Å |
| envelope_rg | 19.84 Å |
| shape_rg | 19.84 Å |
| total_rg | 20.50 Å |
| total_atoms | 4312 |
| n_residues | 278 |
| n_harmonics | 20 |
| q_range | — – 0.5000 Å−1 |
| n_points | 101 |
| shell_type | directional |
| solvent_density | 0.3340 e/ų |
| contrast_shell | 0.0300 e/ų |
| crysol_version | 4.1.3 |
3. P(r) Analysis (GNOM)
| dmax | 68.2 Å |
| rg_real | 20.91 Å |
| rg_real_error | 0.40 Å |
| i0_real | 1.7340e+07 |
| i0_real_error | 2.2850e+05 |
| rg_reciprocal | 20.92 Å |
| i0_reciprocal | 17340000.0000 |
| total_estimate | 0.8983 |
| solution_quality | GOOD a GOOD solution |
| n_peaks | 2 |
| r_peak_primary | 23.7 Å |
| skewness | 0.231 |
| kurtosis | -0.499 |
| angular_range | — – 0.3800 Å−1 |
| current_alpha | 0.0000 |
| highest_alpha | 2270000.0000 |
| n_real_points | 70 |
| gnom_version | 4.1.3 |
| quality_criteria | AN1: 0.000; Oscil: 0.896; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.999; Smooth: 0.987 |