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9r9l

sucrose hydrolase SuxB from Xanthomonas oryzae pv. oryzae in complex with glucose

Method: X-RAY DIFFRACTION D_max: 137.2 Å Quality: EXCELLENT

SAXS Profile

P(r) Distribution

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1. Structure Basics

entry_id	9r9l
deposition_date	2025-05-20
last_revision	2026-03-25
title	sucrose hydrolase SuxB from Xanthomonas oryzae pv. oryzae in complex with glucose
keywords	amylosucrase, HYDROLASE; HYDROLASE
method	X-RAY DIFFRACTION

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Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

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2. SAXS Parameters (CRYSOL)

rg_guinier	42.91 Å
rg_electron	42.39 Å
i0	641665000.00
molecular_weight	205520.0 kDa
excluded_volume	255210 Å³
envelope_volume	318410 Å³
shell_volume	60943 Å³
envelope_diameter	138.1 Å
shell_rg	49.40 Å
envelope_rg	41.48 Å
shape_rg	42.39 Å
total_rg	42.67 Å
total_atoms	14519
n_residues	1864
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

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3. P(r) Analysis (GNOM)

dmax	137.2 Å
rg_real	42.80 Å
rg_real_error	1.21 Å
i0_real	6.4170e+08
i0_real_error	1.2440e+07
rg_reciprocal	42.91 Å
i0_reciprocal	641700000.0000
total_estimate	0.9009
solution_quality	EXCELLENT a EXCELLENT solution
n_peaks	3
r_peak_primary	63.0 Å
skewness	0.116
kurtosis	-0.764
angular_range	— – 0.1850 Å⁻¹
current_alpha	0.0000
highest_alpha	213000000.0000
n_real_points	38
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.918; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.999; Smooth: 0.954

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4. Crystallography & Experiment

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5. Entities & Polymer Info (4)

Entity 1 polymer

description	Amylosucrase
formula_weight	69967.5 kDa
src_method	man
entity_count	3

Polymer

type	polypeptide(L)
strand_id	A,B,C
atom_count	14524

MSTSPINSTILRAAFAAPLDPQRAAIVMARYDQHAPRLLDALQTLYGQRAHYAPWLTQWLGELGDLARQRPQALQTLDSTRHAGWFGEQHMLGYSAYADRFAGTLQGVAERVPYLQELGVRYLHLLPFLRARAGDNDGGFAVSDYGQVEPSLGSNDDLIALTTRLREADISLCADFVLNHTADDHAWAQAARAGDTRYLDYYHHFADRSLPDQYESALGQVFPHTAPGNFTWVDDTAQWMWTTFYPYQWDLNWSNPAVFGDMALAMLRLANLGVEAFRLDSTAYLWKRTGTDCMNQPEAHTLLVALRAVTDIVAPSVVMKAEAIVPMTQLPPYFGSGAGQGHECHLAYHSTLMAAGWSALALQRGDILHNVIAHSPPLPRNCAWLSYVRCHDDIGWNVLQHEAAGNAAQPPFSLRDVARFYANAVPGSYARGESFQSSGDGVHGTNGMAAALAGIQAAQEAGDAAGLAVAVNRLMLLYAIALAMPGVPLIYMGDELAMLNDTSYRDDPHRQHEGRWLHRPAMDWRLAAQRHDAESLSGTVYRRLRGLIQQRAALGALAADHALGSIALDDPRLFALSRGESFLAVHNFSDQPLEVELAAIGDGWELLAIGDDVDAAAPSDNVSLVLPAYGVRWLQRGA

Source

organism	Xanthomonas oryzae pv. oryzae
ncbi_taxonomy_id	64187
host_organism	Escherichia coli

Entity 2 non-polymer

description	POTASSIUM ION
formula_weight	39.1 kDa
src_method	syn
entity_count	2

Entity 3 non-polymer

description	alpha-D-glucopyranose
formula_weight	180.2 kDa
src_method	nat
entity_count	3

Entity 4 water

description	water
formula_weight	18.0 kDa
src_method	nat
entity_count	5

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6. Citations (1)

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length_a	100.535 Å
length_b	172.726 Å
length_c	259.777 Å
angle_alpha	90.00 °
angle_beta	90.00 °
angle_gamma	90.00 °
z_pdb	24

space_group	I 2 2 2
int_tables_number	23
crystal_system	—

resolution	2.950 Å
resolution_low	49.750 Å
r_factor	0.2328
r_work	0.2290
r_free	0.3018

fit	/app/data/saxs_computation/r9/9r9l/9r9l.fit
pddf	/app/data/pr_computation/r9/9r9l/9r9l.pr.out
profile	/app/data/saxs_computation/r9/9r9l/9r9l.dat

sucrose hydrolase SuxB from Xanthomonas oryzae pv. oryzae in complex with glucose

SAXS Profile

P(r) Distribution

1. Structure Basics

Download Data

2. SAXS Parameters (CRYSOL)

3. P(r) Analysis (GNOM)

4. Crystallography & Experiment

Unit Cell

Symmetry

Refinement

Diffraction