Crystal Structure of glxR

Method: X-RAY DIFFRACTION D_max: 114.7 Å Quality: EXCELLENT

SAXS Profile

P(r) Distribution

▼

1. Structure Basics

entry_id	9rb2
deposition_date	2025-05-21
title	Crystal Structure of glxR
keywords	GlxR, tartronate semialdehyde reductase, glyoxylate, TRANSFERASE; TRANSFERASE
method	X-RAY DIFFRACTION

▼

Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

▼

2. SAXS Parameters (CRYSOL)

rg_guinier	36.69 Å
rg_electron	35.93 Å
i0	243450000.00
molecular_weight	125100.0 kDa
excluded_volume	156490 Å³
envelope_volume	207730 Å³
shell_volume	47725 Å³
envelope_diameter	117.7 Å
shell_rg	42.83 Å
envelope_rg	35.08 Å
shape_rg	35.96 Å
total_rg	36.33 Å
total_atoms	8784
n_residues	1194
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

▼

3. P(r) Analysis (GNOM)

dmax	114.7 Å
rg_real	36.52 Å
rg_real_error	0.96 Å
i0_real	2.4340e+08
i0_real_error	4.2570e+06
rg_reciprocal	36.63 Å
i0_reciprocal	243500000.0000
total_estimate	0.9077
solution_quality	EXCELLENT a EXCELLENT solution
n_peaks	1
r_peak_primary	50.7 Å
skewness	0.076
kurtosis	-0.635
angular_range	— – 0.2150 Å⁻¹
current_alpha	0.0000
highest_alpha	39640000.0000
n_real_points	44
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.945; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 1.000; Smooth: 0.961

▶

4. Crystallography & Experiment

▶

5. Entities & Polymer Info (2)

▶

6. Citations (1)

▶

length_a	79.176 Å
length_b	109.209 Å
length_c	146.695 Å
angle_alpha	90.00 °
angle_beta	93.39 °
angle_gamma	90.00 °
z_pdb	16

space_group	C 1 2 1
int_tables_number	5
crystal_system	—

resolution	2.210 Å
resolution_low	73.220 Å
r_factor	0.2360
r_work	0.2347
r_free	0.2732

description	Probable oxidoreductase
formula_weight	32990.6 kDa
src_method	man
entity_count	4

type	polypeptide(L)
strand_id	A,B,C,D
atom_count	9250

Crystal Structure of glxR

SAXS Profile

P(r) Distribution

1. Structure Basics

Download Data

2. SAXS Parameters (CRYSOL)

3. P(r) Analysis (GNOM)

4. Crystallography & Experiment

Unit Cell

Symmetry

Refinement

Diffraction

5. Entities & Polymer Info (2)

Entity 1 polymer

Polymer

Source

Entity 2 water

6. Citations (1)

7. Files & Curves (10)

Files (7)

Curves (3)

organism	Pseudomonas aeruginosa
ncbi_taxonomy_id	287
host_organism	Escherichia coli BL21(DE3)

description	water
formula_weight	18.0 kDa
src_method	nat
entity_count	361

fit	/app/data/saxs_computation/rb/9rb2/9rb2.fit
pddf	/app/data/pr_computation/rb/9rb2/9rb2.pr.out
profile	/app/data/saxs_computation/rb/9rb2/9rb2.dat